genome.fa.s12.2.7.7.80.10.50.1000.300.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  300  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90330288--90330325	19	2.2	18	86	13	53	76	0	15	7	1.01
90330810--90330912	29	3.6	29	81	2	118	23	16	32	28	1.96
90337201--90337239	20	2.1	19	86	13	55	76	0	15	7	0.99
90337723--90337825	29	3.6	29	81	2	118	23	16	32	28	1.96
90340005--90340087	22	3.8	22	78	0	85	30	28	10	30	1.91
90340206--90340253	21	2.2	22	88	3	71	47	10	10	31	1.71
90341375--90341480	53	2.0	53	96	0	194	35	22	12	29	1.91
90343034--90343141	44	2.4	44	87	3	144	29	23	13	33	1.93
90350365--90350472	44	2.4	44	87	3	144	29	23	13	33	1.93
90355559--90355602	22	2.0	22	91	8	72	22	20	18	38	1.93
90355771--90355803	11	3.1	11	82	8	50	9	18	12	60	1.57
90362011--90362249	39	6.4	37	82	4	232	30	15	19	34	1.92
90362011--90362252	73	3.2	73	82	4	252	31	14	19	34	1.92
90362660--90362699	18	2.2	18	86	0	53	32	15	10	42	1.79
90364212--90364259	23	2.1	23	88	0	69	27	20	14	37	1.92
90364224--90364282	23	2.7	22	84	7	68	22	18	15	44	1.87
90367101--90367362	40	6.6	40	93	1	420	25	22	27	24	2.00
90368110--90368141	2	16.0	2	93	0	55	46	50	3	0	1.17
90372731--90372797	33	2.0	33	100	0	134	34	29	14	20	1.93
90383578--90383618	22	1.9	22	90	5	66	19	29	41	9	1.83
90387446--90387498	23	2.3	23	96	0	97	16	24	32	26	1.97
90387908--90388124	46	4.6	46	79	12	221	22	31	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90387954--90388127	94	1.9	92	86	7	253	22	31	20	25	1.98
90394598--90394623	2	13.0	2	100	0	52	50	0	0	50	1.00
90396507--90396534	13	2.2	13	100	0	56	25	32	14	28	1.94
90408322--90408356	11	3.2	11	83	0	52	34	17	22	25	1.96
90413894--90413942	20	2.5	20	89	0	71	10	30	38	20	1.86
90414706--90414915	52	4.1	52	73	13	168	30	28	15	26	1.96
90432339--90432387	22	2.2	22	85	7	64	40	18	24	16	1.90
90435928--90436025	20	4.9	20	76	5	99	34	18	33	13	1.89
90435929--90436029	40	2.5	40	82	3	114	35	18	32	12	1.89
90438634--90438807	48	3.6	48	77	7	174	32	18	25	23	1.97
90438631--90438851	96	2.3	96	83	3	275	30	19	26	23	1.98
90443116--90443177	18	3.4	17	78	10	52	70	1	24	3	1.10
90443249--90443322	22	3.1	22	81	15	60	33	4	1	60	1.24
90443283--90443343	21	2.9	22	81	11	58	29	1	1	67	1.10
90443380--90443406	11	2.5	11	100	0	54	14	0	0	85	0.61
90443646--90443699	24	2.2	24	100	0	108	44	7	9	38	1.65
90445106--90445158	16	3.4	16	79	12	65	35	1	1	60	1.19
90445673--90445723	21	2.4	21	80	0	57	27	1	25	45	1.64
90452726--90452860	40	3.5	39	75	14	127	33	23	18	24	1.97
90453711--90453754	22	2.0	22	100	0	88	13	27	0	59	1.35
90453746--90453778	4	8.2	4	87	12	50	0	24	0	75	0.80
90453748--90453780	16	2.1	15	94	5	57	0	21	0	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90453718--90453778	22	2.9	21	87	4	79	4	26	0	68	1.09
90453853--90453879	14	1.9	14	100	0	54	62	0	0	37	0.95
90454722--90454783	20	2.8	23	71	14	67	56	0	14	29	1.39
90456629--90456751	43	2.9	43	83	0	174	27	18	17	35	1.94
90460750--90460829	3	26.7	3	100	0	160	32	0	0	67	0.91
90466666--90466714	21	2.3	21	83	13	57	65	12	0	22	1.26
90471471--90471500	2	14.5	2	93	6	51	46	3	0	50	1.18
90476453--90476607	39	3.9	39	92	0	256	23	32	20	22	1.98
90481505--90481568	20	3.2	20	76	8	76	18	21	21	37	1.94
90483057--90483132	33	2.3	32	82	6	89	28	25	14	31	1.95
90492631--90492680	10	5.0	10	79	13	50	20	10	2	68	1.29
90499021--90499084	5	12.8	5	75	18	62	18	4	1	75	1.06
90502239--90502286	10	4.8	10	87	10	62	22	8	2	66	1.29
90502229--90502286	20	2.9	19	82	10	71	22	8	1	67	1.27
90502229--90502286	30	1.9	30	83	13	75	22	8	1	67	1.27
90506130--90506160	9	3.4	9	95	0	53	29	9	16	45	1.79
90506353--90506400	25	1.9	25	86	0	69	33	25	16	25	1.96
90506437--90506479	20	2.2	20	100	0	86	37	11	18	32	1.87
90506444--90506487	20	2.2	20	91	0	70	34	11	22	31	1.90
90506532--90506635	24	4.4	24	93	4	176	31	19	22	26	1.97
90506532--90506635	47	2.2	47	93	5	174	31	19	22	26	1.97
90506842--90506905	31	2.1	31	90	0	101	35	15	23	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90512223--90512441	47	4.7	47	86	5	275	28	30	9	32	1.88
90512273--90512351	25	3.3	25	63	10	65	34	27	5	32	1.79
90512345--90512416	22	3.3	22	64	24	62	27	30	12	29	1.93
90519642--90519862	40	5.6	40	92	1	347	22	21	30	25	1.99
90527697--90527908	40	5.3	40	90	0	327	22	20	30	26	1.98
90529719--90529928	40	5.2	40	87	2	305	25	24	28	21	1.99
90533335--90533382	25	1.9	25	86	0	69	33	25	16	25	1.96
90533421--90533477	9	5.9	9	73	15	51	35	8	21	35	1.84
90533419--90533481	20	3.2	20	95	0	117	36	12	19	31	1.89
90533535--90533663	24	5.4	24	94	2	215	31	20	21	26	1.98
90533870--90533933	31	2.1	31	88	2	94	37	15	21	25	1.93
90541418--90541465	25	1.9	25	86	0	69	33	25	16	25	1.96
90541504--90541560	9	5.9	9	73	15	51	35	8	21	35	1.84
90541502--90541564	20	3.2	20	95	0	117	36	12	19	31	1.89
90541618--90541722	24	4.4	24	95	3	185	31	20	21	26	1.98
90541928--90541991	31	2.1	31	90	0	101	35	15	23	25	1.94
90546333--90546444	42	2.7	42	86	5	147	31	16	23	28	1.96
90549314--90549465	42	3.6	42	77	4	155	31	24	13	30	1.94
90559281--90559323	17	2.6	17	81	3	52	60	16	0	23	1.35
90559606--90559702	47	2.1	47	98	0	185	34	17	11	37	1.86
90562269--90562308	3	13.3	3	89	0	62	65	2	0	32	1.06
90564757--90564962	40	5.1	40	78	7	141	23	25	24	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90564743--90564925	80	2.3	80	80	4	190	22	24	24	28	1.99
90564783--90564962	40	4.5	40	78	6	177	23	25	23	26	2.00
90567215--90567678	143	3.3	143	84	0	592	25	22	21	30	1.98
90567407--90567534	44	2.8	46	75	8	120	26	23	20	29	1.99
90568036--90568175	46	3.0	46	90	0	217	25	25	17	32	1.96
90568559--90568662	53	2.0	53	92	0	172	52	8	16	22	1.70
90572811--90572880	35	2.0	35	100	0	140	25	37	25	11	1.90
90573594--90573649	23	2.5	22	82	8	67	10	8	0	80	0.91
90573620--90573649	14	2.1	14	93	0	51	0	10	0	90	0.47
90573668--90573704	19	1.9	20	94	5	67	0	5	8	86	0.70
90580900--90580969	35	2.0	35	100	0	140	25	37	25	11	1.90
90583881--90583915	2	17.5	2	100	0	70	51	0	0	48	1.00
90586160--90586184	2	12.5	2	100	0	50	52	0	0	48	1.00
90596216--90596265	26	1.9	26	91	0	82	38	14	26	22	1.91
90599106--90599203	27	3.6	27	70	15	76	19	31	24	24	1.98
90599171--90599250	27	3.0	27	83	3	99	17	33	22	26	1.96
90607923--90607947	8	3.1	8	100	0	50	0	12	40	48	1.40
90619016--90619066	27	1.9	26	84	11	68	68	1	1	27	1.11
90621143--90621182	20	2.0	20	85	9	55	10	30	17	42	1.82
90633228--90633357	40	3.2	40	80	4	156	23	24	27	23	2.00
90636190--90636349	87	1.8	86	88	6	243	28	17	17	36	1.93
90637900--90638123	49	4.7	47	76	15	212	27	19	30	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90645741--90645832	45	2.0	45	97	0	175	13	23	35	27	1.92
90653890--90653956	25	2.7	25	86	9	84	25	22	23	28	1.99
90658015--90658190	46	3.8	46	74	12	162	19	19	29	31	1.97
90658011--90658183	93	1.9	93	92	0	292	20	19	30	30	1.97
90663425--90663490	28	2.4	28	86	0	96	33	10	30	25	1.90
90663905--90663932	14	2.0	14	100	0	56	14	14	14	57	1.66
90667084--90667146	24	2.6	24	100	0	126	34	26	17	20	1.95
90673293--90673419	40	3.2	40	81	6	141	23	22	29	24	1.99
90678139--90678201	24	2.6	24	100	0	126	34	26	17	20	1.95
90684846--90684985	39	3.6	38	76	7	124	27	23	27	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345