genome.fa.s12.2.7.7.80.10.50.1000.214.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  214  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61773847--61773990	47	3.0	47	88	4	209	29	22	20	27	1.98
61774183--61774246	31	2.1	31	87	0	92	37	15	21	25	1.93
61777643--61777770	43	3.0	43	83	4	170	31	27	14	27	1.95
61778987--61779029	20	2.2	20	87	8	61	32	25	0	41	1.56
61780270--61780325	21	2.8	21	81	5	53	33	0	21	44	1.52
61780630--61780729	41	2.4	42	81	3	112	23	18	26	33	1.97
61782950--61783034	23	3.7	23	83	9	93	24	24	18	31	1.98
61783206--61783262	20	2.8	19	85	15	71	42	5	17	35	1.72
61783206--61783249	20	2.2	20	95	0	79	40	4	18	36	1.71
61784727--61784798	36	2.1	34	82	10	83	22	18	6	52	1.68
61789597--61789634	16	2.4	16	95	4	69	28	0	5	65	1.14
61792764--61792898	40	3.4	40	93	0	234	22	20	27	30	1.98
61792764--61792922	80	2.0	80	86	0	219	23	21	25	28	1.99
61797774--61797874	28	3.5	30	82	6	118	29	14	26	28	1.95
61797803--61797878	29	2.7	28	76	13	75	30	14	26	28	1.95
61813553--61813624	36	2.1	36	92	5	121	31	9	4	54	1.52
61816107--61816287	45	4.0	45	80	4	188	22	14	28	35	1.93
61818477--61818778	27	11.2	27	83	5	308	30	23	6	39	1.81
61818488--61818778	54	5.4	53	83	6	361	30	23	6	39	1.79
61818485--61818816	107	3.1	107	85	3	321	31	22	7	37	1.82
61818810--61818935	27	4.7	27	82	3	137	38	20	11	29	1.87
61818863--61819023	27	5.9	27	76	11	105	39	16	10	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61819077--61819153	27	2.9	28	79	11	81	33	16	23	25	1.96
61820986--61821170	40	4.7	40	86	8	211	25	21	27	25	2.00
61829081--61829264	40	4.7	40	87	7	218	25	21	26	26	2.00
61829081--61829264	79	2.3	79	81	10	216	25	21	26	26	2.00
61829118--61829283	79	2.1	80	81	9	198	27	21	25	25	1.99
61831414--61831468	25	2.2	25	83	3	65	25	23	21	29	1.99
61831424--61831475	25	2.1	24	85	3	68	32	19	19	28	1.96
61831616--61831707	42	2.2	42	98	0	175	31	13	20	34	1.91
61838801--61838918	41	3.1	41	60	28	98	32	17	28	21	1.96
61838769--61838932	71	2.3	71	100	0	328	35	17	28	18	1.94
61845909--61846026	41	3.1	41	60	28	98	32	17	28	21	1.96
61845877--61846040	71	2.3	71	100	0	328	35	17	28	18	1.94
61853717--61853819	29	3.6	28	80	5	109	27	26	16	30	1.97
61861344--61861482	40	3.5	39	79	7	129	23	28	24	23	2.00
61865119--61865152	17	2.0	17	88	0	50	82	0	17	0	0.67
61866412--61866615	40	5.1	40	93	2	313	21	24	29	25	1.99
61875714--61875817	33	3.2	32	78	13	122	36	14	23	25	1.93
61875714--61875816	32	3.2	31	80	6	116	35	14	23	26	1.93
61875822--61875992	31	5.5	31	84	2	200	29	16	28	25	1.97
61876056--61876120	27	2.4	27	89	5	96	36	13	26	23	1.92
61890188--61890246	18	3.4	18	75	11	70	49	8	13	28	1.71
61905071--61905212	39	3.7	39	88	4	225	26	21	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61905072--61905252	76	2.3	79	88	3	260	24	22	29	23	1.99
61913282--61913399	41	3.1	41	60	28	98	32	17	28	21	1.96
61913250--61913413	71	2.3	71	100	0	328	35	17	28	18	1.94
61925059--61925241	40	4.6	40	83	8	198	26	27	21	24	2.00
61925059--61925241	78	2.3	80	83	7	223	26	27	21	24	2.00
61930687--61930738	27	1.9	27	84	7	70	40	19	15	25	1.90
61934722--61934807	31	2.8	31	94	1	156	24	26	17	31	1.97
61935024--61935094	26	2.8	25	87	4	97	28	21	25	25	1.99
61945758--61945843	31	2.8	31	94	1	156	24	26	17	31	1.97
61946061--61946131	26	2.8	25	87	4	97	26	23	23	25	2.00
61946262--61946309	25	1.9	25	82	0	60	29	14	22	33	1.94
61949868--61950035	71	2.3	73	95	4	304	19	28	17	34	1.95
61956295--61956458	71	2.3	71	100	0	328	18	28	17	35	1.94
61956295--61956492	71	2.8	70	91	3	258	20	28	17	33	1.95
61959849--61959995	43	3.4	44	79	7	160	27	14	24	32	1.95
61962025--61962336	46	6.6	49	74	11	212	23	25	20	30	1.99
61962072--61962336	94	2.8	93	80	11	285	22	25	20	31	1.98
61963044--61963068	13	1.9	13	100	0	50	64	16	4	16	1.44
61968411--61968580	92	1.8	92	96	0	313	27	30	21	20	1.98
61968402--61968576	46	3.8	46	80	3	226	28	29	21	20	1.98
61968407--61968595	46	4.1	45	72	13	143	28	29	21	20	1.98
61970945--61971033	30	3.0	30	80	8	101	57	15	16	10	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61970945--61971024	15	5.4	15	80	7	92	58	13	17	10	1.62
61970956--61971033	15	5.2	15	78	9	79	56	15	16	11	1.67
61973981--61974152	93	1.8	93	96	0	317	27	30	22	20	1.98
61973973--61974148	46	3.8	46	81	10	232	28	29	21	20	1.98
61977846--61977906	30	2.1	29	90	3	95	36	22	16	24	1.94
61985067--61985127	30	2.1	29	93	3	104	36	22	14	26	1.93
61986675--61986727	26	2.0	26	82	7	63	35	33	18	11	1.87
61988562--61988685	39	3.2	39	95	1	212	22	19	32	25	1.97
61988562--61988715	79	1.9	79	83	5	195	22	20	31	25	1.98
61996495--61996657	39	4.2	39	93	0	263	23	20	31	24	1.98
61996495--61996687	39	4.9	39	90	0	251	23	21	31	23	1.98
62007560--62007618	30	1.9	30	86	3	82	35	0	42	22	1.54
62010342--62010399	25	2.3	25	84	0	71	25	25	15	32	1.95
62017241--62017271	16	1.9	16	93	0	53	48	12	25	12	1.77
62020732--62020790	30	2.0	30	86	3	84	27	15	27	30	1.96
62028030--62028074	21	2.1	21	100	0	90	33	4	17	44	1.69
62033051--62033223	43	4.0	44	81	11	189	31	27	17	23	1.97
62039698--62039747	17	3.0	16	78	18	57	24	4	2	70	1.15
62043737--62043829	29	3.2	29	87	0	123	33	16	27	22	1.95
62043737--62043842	29	3.7	29	82	5	115	30	16	31	22	1.95
62045530--62045554	11	2.3	11	100	0	50	28	8	20	44	1.79
62046601--62046639	20	2.0	20	89	0	60	38	12	10	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62049839--62049893	27	2.0	27	100	0	110	21	12	32	32	1.91
62050836--62050893	30	1.9	31	86	10	84	44	1	22	31	1.63
62053310--62053412	29	3.6	28	80	5	109	27	26	16	30	1.97
62061165--62061267	29	3.6	28	80	5	109	27	26	16	30	1.97
62062947--62063130	40	4.6	40	90	2	273	23	21	27	26	1.99
62066106--62066274	93	1.8	91	94	2	302	28	28	21	21	1.99
62066101--62066282	44	4.0	44	76	14	190	29	28	20	22	1.98
62071585--62071720	47	3.0	43	77	14	132	29	27	19	22	1.98
62077421--62077600	40	4.6	40	82	6	199	25	21	26	27	1.99
62077421--62077600	79	2.3	79	81	7	213	25	21	26	27	1.99
62078873--62079055	40	4.7	39	86	8	239	24	21	27	26	1.99
62078873--62079055	77	2.3	80	85	8	241	24	21	27	26	1.99
62086951--62087135	79	2.3	81	85	7	245	24	22	27	26	2.00
62086952--62087135	40	4.6	39	84	9	221	24	22	27	26	2.00
62086952--62087168	79	2.7	78	80	12	237	25	21	26	25	2.00
62088529--62088675	43	3.4	43	82	3	163	31	25	15	27	1.96
62089131--62089281	75	2.0	75	90	0	239	33	21	1	43	1.64
62092239--62092468	49	4.6	50	82	2	266	25	18	25	30	1.98
62101628--62101803	46	3.8	46	76	12	189	21	21	28	28	1.98
62101624--62101796	93	1.9	93	92	0	292	21	21	29	27	1.98
62103798--62103849	15	3.5	15	78	7	61	13	13	13	59	1.61
62115642--62115681	19	2.1	19	95	0	71	35	10	12	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62118945--62118989	2	22.5	2	95	0	72	51	4	0	44	1.21
62120986--62121046	30	2.0	30	83	0	77	31	22	8	37	1.84
62123284--62123310	2	13.5	2	100	0	54	51	0	0	48	1.00
62126064--62126211	40	3.7	40	87	1	179	33	27	15	23	1.95
62136804--62136842	1	39.0	1	100	0	78	100	0	0	0	0.00
62137906--62137978	22	3.4	22	77	5	60	26	1	24	47	1.60
62141126--62142042	229	4.0	229	87	3	1176	31	6	24	38	1.81
62141135--62142044	23	39.7	23	75	10	684	31	6	24	37	1.81
62143244--62143283	19	2.0	22	85	14	59	32	47	2	17	1.61
62143345--62143565	27	8.2	27	88	2	293	34	21	23	19	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345