genome.fa.s12.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  117  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31150132--31150225	13	7.5	13	74	14	65	42	2	0	55	1.12
31150184--31150225	21	1.9	23	85	9	61	45	0	0	54	0.99
31150277--31150323	20	2.4	19	83	16	60	21	6	2	70	1.20
31150424--31150464	22	1.9	21	85	14	57	58	0	0	41	0.98
31150418--31150527	34	3.2	35	81	5	134	60	2	0	35	1.17
31150569--31150642	36	2.1	36	85	10	98	72	2	4	20	1.13
31150564--31150616	18	2.9	18	77	5	54	71	1	1	24	1.06
31150619--31150671	18	2.8	19	74	8	63	75	1	7	15	1.11
31150854--31150880	14	1.9	14	100	0	54	55	0	0	44	0.99
31150860--31150904	23	2.0	23	86	8	65	53	0	2	44	1.13
31150859--31150933	36	2.1	35	83	11	91	54	1	1	42	1.17
31150886--31150961	36	2.1	36	80	4	82	59	5	2	32	1.34
31151044--31151117	31	2.5	28	75	16	69	78	4	5	12	1.06
31151047--31151110	16	3.8	17	78	12	60	79	4	4	10	1.02
31151132--31151177	23	2.0	24	83	12	60	80	0	8	10	0.91
31151138--31151211	30	2.5	29	86	4	103	77	0	10	12	1.01
31151145--31151201	17	3.6	16	77	18	57	75	0	10	14	1.05
31151829--31151878	9	5.6	9	85	0	64	40	22	12	26	1.88
31158650--31158744	23	4.2	21	76	12	75	40	18	22	18	1.92
31158636--31158734	45	2.2	45	81	0	117	38	17	23	21	1.93
31161555--31161584	15	1.9	16	93	6	53	26	20	13	40	1.89
31164057--31164082	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31164621--31164654	2	17.0	2	93	0	59	47	0	0	52	1.00
31164667--31164792	64	2.0	64	98	0	243	34	9	10	46	1.71
31172332--31172385	20	2.7	20	100	0	108	51	18	5	24	1.67
31172326--31172376	20	2.2	24	70	29	65	50	23	3	21	1.65
31175794--31175827	15	2.4	14	90	5	50	73	8	8	8	1.25
31176011--31176049	8	4.9	8	96	0	69	53	0	46	0	1.00
31175998--31176065	19	3.8	17	70	19	50	63	0	36	0	0.95
31176102--31176164	14	4.4	14	75	13	58	68	0	31	0	0.90
31176107--31176164	19	3.4	17	76	17	50	65	0	34	0	0.93
31176600--31176661	30	2.3	25	79	17	70	69	0	4	25	1.08
31176882--31176941	30	2.1	28	84	12	77	68	3	5	23	1.24
31177047--31177098	15	3.5	15	76	5	52	71	1	3	23	1.13
31177428--31177469	22	2.0	22	90	4	68	59	7	0	33	1.25
31176747--31178546	145	12.1	148	78	11	1798	55	6	8	30	1.53
31177873--31177914	22	2.0	22	90	4	68	59	7	0	33	1.25
31176748--31178546	443	4.0	444	92	4	2737	55	6	8	30	1.53
31178316--31178357	22	2.0	22	90	4	68	59	7	0	33	1.25
31180412--31180553	70	2.0	72	90	2	225	21	26	18	33	1.96
31180598--31180670	32	2.2	32	80	7	85	20	45	17	16	1.86
31184688--31184749	15	3.8	16	74	17	56	1	32	0	66	1.02
31184830--31184893	27	2.4	27	94	0	110	17	39	29	14	1.88
31185055--31185092	18	2.1	18	85	9	51	21	0	2	76	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31189136--31189166	2	15.5	2	100	0	62	48	0	0	51	1.00
31190923--31190966	21	2.2	20	83	4	52	36	0	22	40	1.54
31193423--31193487	21	3.2	20	65	12	53	12	26	21	40	1.88
31193405--31193489	39	2.2	39	95	0	152	12	25	23	37	1.91
31193405--31193505	39	2.6	39	90	0	139	12	25	23	37	1.91
31194302--31194360	26	2.2	28	80	16	65	16	25	20	37	1.93
31194492--31194547	25	2.2	25	80	0	67	25	26	17	30	1.97
31203118--31203149	16	2.0	16	100	0	64	18	18	12	50	1.78
31207092--31207139	26	1.9	26	84	16	66	60	6	2	31	1.33
31217338--31217504	40	4.2	40	81	2	176	24	27	22	25	2.00
31217354--31217504	80	1.9	79	83	6	198	23	27	22	25	2.00
31218698--31218805	56	1.9	56	83	7	139	28	16	18	36	1.93
31219766--31219808	19	2.2	20	91	8	70	39	9	16	34	1.80
31224399--31224659	48	5.4	48	92	2	423	35	5	27	31	1.80
31224399--31224653	98	2.6	98	94	1	442	35	5	27	31	1.80
31224800--31224902	37	2.8	37	93	0	179	24	20	31	24	1.98
31230437--31230494	7	7.4	7	80	16	53	84	0	13	1	0.70
31230443--31230488	18	2.7	18	93	6	78	86	0	13	0	0.56
31230443--31230494	17	3.2	17	87	12	74	86	0	13	0	0.57
31231450--31231584	41	3.3	38	71	21	114	28	23	22	24	1.99
31231444--31231801	166	2.1	165	88	5	533	30	22	22	24	1.99
31231440--31231801	84	4.3	84	85	7	506	30	23	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31231891--31232447	175	3.2	174	92	1	918	33	20	20	26	1.97
31231940--31232390	86	5.2	86	63	21	249	34	20	19	25	1.96
31235905--31235986	19	4.3	19	93	0	137	35	9	18	36	1.84
31237860--31237911	21	2.5	21	93	0	86	26	9	36	26	1.87
31238138--31238199	33	1.9	33	83	9	83	46	1	4	46	1.33
31238356--31238384	15	2.0	15	93	6	51	41	6	6	44	1.58
31239919--31240078	32	5.0	32	91	0	266	45	10	12	32	1.75
31239919--31240078	64	2.5	64	95	0	293	45	10	12	32	1.75
31244588--31244625	20	1.9	20	89	10	60	21	21	0	57	1.40
31252006--31252082	31	2.5	30	87	4	100	32	9	11	46	1.72
31262743--31262773	4	7.8	4	100	0	62	25	0	22	51	1.48
31266586--31266875	3	97.7	3	70	18	130	62	2	6	28	1.34
31266771--31266869	20	4.8	20	72	15	67	62	3	6	28	1.34
31266771--31266869	23	4.6	23	77	7	75	62	3	6	28	1.34
31266896--31266959	21	3.0	21	77	4	67	64	3	9	23	1.38
31267020--31267063	18	2.6	16	82	7	52	70	4	13	11	1.31
31270503--31271000	29	17.1	29	73	8	271	22	27	13	36	1.92
31270502--31270707	87	2.4	87	88	0	304	20	28	15	35	1.93
31270574--31270993	116	3.6	115	83	1	491	23	27	12	36	1.91
31272416--31272568	42	3.7	40	72	13	130	30	15	24	30	1.96
31273593--31273653	30	2.0	30	90	0	95	24	32	26	16	1.96
31279605--31279642	11	3.3	11	92	7	58	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31288960--31289170	64	3.2	64	62	20	151	29	26	18	26	1.98
31288926--31289212	137	2.1	137	98	0	556	31	25	19	24	1.98
31289477--31289552	26	2.8	27	80	4	73	26	13	23	36	1.91
31290994--31291103	26	4.2	26	91	0	175	35	24	6	33	1.81
31295885--31295924	12	3.3	12	100	0	80	15	50	27	7	1.70
31297204--31297414	64	3.2	64	62	20	151	29	26	18	26	1.98
31297170--31297456	137	2.1	137	98	0	556	31	25	19	24	1.98
31297721--31297796	26	2.8	27	80	4	73	26	13	23	36	1.91
31304051--31304160	26	4.2	26	89	0	166	36	23	6	33	1.80
31305327--31305363	10	3.4	11	88	11	58	35	0	0	64	0.94
31305520--31305558	17	2.2	19	86	9	55	28	2	2	66	1.18
31308041--31308068	2	14.0	2	100	0	56	50	0	0	50	1.00
31315239--31315276	2	19.5	2	94	5	69	50	0	0	50	1.00
31324062--31324158	44	2.2	46	82	14	123	31	15	22	29	1.95
31323834--31324420	177	3.3	177	89	1	827	31	17	21	29	1.97
31325816--31325885	27	2.6	27	78	15	72	30	4	2	62	1.28
31327101--31327142	3	13.7	3	80	14	50	30	4	0	64	1.14
31327101--31327150	23	2.1	24	85	10	68	30	8	0	62	1.24
31327103--31327143	21	2.0	20	90	4	64	29	7	0	63	1.21
31327224--31327303	3	27.0	3	97	2	153	33	0	0	66	0.92
31327448--31327559	54	2.1	54	100	0	224	20	12	7	59	1.56
31327471--31327559	15	6.6	13	71	20	51	21	10	6	61	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31328664--31328697	14	2.4	14	85	0	50	23	8	26	41	1.83
31329022--31329074	27	2.1	24	86	10	70	32	1	20	45	1.62
31332606--31332634	14	2.1	14	93	6	51	34	0	10	55	1.34
31333051--31333091	21	2.0	21	95	0	73	31	21	43	2	1.66
31333460--31333609	43	3.5	42	85	8	187	28	30	18	22	1.98
31336062--31336160	31	3.2	31	68	16	96	26	2	18	53	1.55
31336062--31336186	62	2.0	62	98	0	241	24	1	18	55	1.52
31341274--31341304	15	2.1	15	100	0	62	32	6	41	19	1.77
31344448--31344513	29	2.2	30	81	10	82	42	4	7	45	1.53
31345341--31345378	19	2.1	19	85	9	53	31	2	5	60	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345