genome.fa.s12.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  163  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45358012--45358076	15	4.4	15	78	16	73	63	13	13	9	1.53
45358012--45358080	30	2.3	31	83	14	92	60	17	13	8	1.56
45361075--45361261	99	1.9	97	86	4	268	28	29	17	24	1.97
45361066--45361250	49	3.8	48	81	11	214	28	28	18	25	1.98
45368302--45368419	29	4.1	29	77	6	125	29	14	29	26	1.95
45375599--45375919	47	6.8	50	75	14	170	23	30	17	28	1.97
45375703--45375919	46	4.7	45	79	8	215	24	30	17	26	1.97
45375665--45375919	140	1.8	140	85	5	363	24	30	17	27	1.97
45377994--45378085	39	2.4	39	94	1	159	23	25	30	20	1.99
45377994--45378104	39	2.8	39	89	2	125	23	27	29	19	1.98
45380162--45380192	14	2.2	14	94	0	53	67	0	0	32	0.91
45380618--45380690	18	4.0	18	73	16	78	16	1	57	24	1.47
45380636--45380735	29	3.2	29	81	11	92	16	2	52	30	1.55
45380632--45380706	37	2.0	37	97	0	141	16	1	54	28	1.50
45381086--45381295	43	4.8	43	66	11	149	26	23	20	30	1.98
45380948--45381389	133	3.3	133	90	0	686	26	21	21	30	1.98
45382332--45382379	24	2.0	24	84	8	62	0	20	4	75	0.97
45382346--45382413	13	5.2	12	78	16	57	1	19	1	77	0.92
45382343--45382425	18	4.5	17	75	19	69	1	16	2	79	0.90
45382343--45382407	6	10.7	6	73	14	53	1	16	1	80	0.88
45382366--45382421	13	4.4	12	82	10	58	1	19	1	76	0.96
45382364--45382425	26	2.5	26	80	15	76	1	17	3	77	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45382366--45382413	13	3.8	13	86	8	64	2	20	0	77	0.88
45383620--45383685	14	4.5	14	73	14	53	1	25	0	72	0.93
45383611--45383693	13	6.2	13	68	12	53	1	24	0	74	0.89
45383614--45383693	40	2.0	41	80	7	92	1	25	0	73	0.90
45386215--45386243	14	2.1	14	93	6	51	72	0	27	0	0.85
45386215--45386275	15	4.1	15	77	10	54	70	1	27	0	0.97
45387526--45387953	133	3.2	133	94	1	775	27	22	22	26	1.99
45389210--45389386	71	2.5	70	90	4	243	33	16	28	21	1.95
45389246--45389386	71	2.0	71	100	0	282	35	15	28	20	1.93
45396016--45396116	28	3.5	28	86	6	114	29	13	26	29	1.94
45403941--45404041	28	3.5	28	86	6	114	29	13	26	29	1.94
45405532--45406558	70	14.6	69	74	10	496	24	18	22	34	1.96
45405526--45406558	140	7.4	139	74	8	578	24	18	22	34	1.96
45405963--45406472	211	2.4	213	81	3	575	24	19	21	33	1.97
45406024--45406466	141	3.1	139	74	8	385	25	19	21	33	1.97
45408596--45408663	25	2.7	25	81	4	75	29	22	23	25	1.99
45416565--45416712	43	3.4	43	87	0	206	30	23	18	27	1.98
45417541--45417569	13	2.1	14	93	6	51	55	10	0	34	1.34
45419353--45419482	40	3.2	40	81	4	156	23	28	23	23	2.00
45422868--45423045	40	4.5	40	90	3	236	22	24	28	24	1.99
45424701--45424812	56	2.0	56	100	0	224	46	12	16	25	1.81
45427719--45427826	30	3.6	30	88	1	153	22	24	19	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45428047--45428117	25	2.8	25	86	2	106	32	22	19	25	1.98
45434826--45434987	39	4.2	39	95	2	281	22	19	32	25	1.97
45434843--45435042	77	2.6	77	86	4	222	22	22	32	23	1.98
45442733--45442895	39	4.2	39	96	0	290	22	19	33	25	1.97
45442750--45442964	78	2.7	78	85	5	227	23	21	31	23	1.98
45446726--45446808	30	2.7	32	87	7	120	22	25	19	32	1.97
45447029--45447099	25	2.8	25	87	10	101	29	22	23	23	1.99
45450415--45450529	9	13.2	9	70	14	64	33	1	16	47	1.57
45450460--45450493	15	2.1	17	89	10	54	35	0	8	55	1.31
45450466--45450533	24	2.7	26	93	6	113	33	1	13	51	1.50
45451838--45451906	33	2.1	33	100	0	138	24	11	11	52	1.71
45453892--45453943	22	2.4	22	78	15	63	19	3	32	44	1.69
45453930--45453972	7	6.3	7	83	5	61	16	0	41	41	1.48
45454319--45454357	19	2.0	19	85	5	51	64	17	5	12	1.46
45454580--45454637	27	2.1	27	83	0	71	31	24	20	24	1.98
45455046--45455105	22	2.7	22	78	0	66	33	21	23	21	1.97
45455458--45455625	27	6.2	27	76	6	126	31	10	19	39	1.84
45455472--45455625	54	2.9	54	79	3	159	31	9	20	38	1.84
45457001--45457038	19	2.0	20	85	15	53	39	23	0	36	1.55
45457263--45457432	46	3.7	46	75	12	177	29	27	20	22	1.98
45457268--45457438	93	1.8	93	88	2	263	29	28	21	21	1.98
45457861--45457920	30	2.0	30	90	0	93	30	25	8	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45461893--45461930	18	2.1	18	100	0	76	50	21	18	10	1.76
45464447--45464484	19	2.0	20	85	15	53	39	23	0	36	1.55
45464714--45464883	92	1.8	93	89	3	272	28	28	21	21	1.99
45465306--45465365	30	2.0	30	90	0	93	30	25	8	36	1.85
45468553--45468710	41	3.8	41	82	0	181	28	18	17	35	1.94
45468509--45468704	82	2.4	82	85	2	259	29	18	17	34	1.94
45476631--45476787	43	3.6	44	75	9	153	23	19	24	32	1.97
45476653--45476763	42	2.6	44	80	9	131	25	16	22	36	1.94
45483182--45483236	25	2.2	25	87	6	76	30	18	25	25	1.98
45485313--45485348	17	2.1	17	100	0	72	50	16	11	22	1.77
45486017--45486049	8	4.0	8	92	7	57	60	0	0	39	0.97
45486184--45486263	15	5.2	15	71	21	51	50	1	1	47	1.17
45489031--45489056	13	2.0	13	100	0	52	23	15	0	61	1.33
45504445--45504572	47	2.7	46	80	7	141	25	28	17	28	1.97
45510532--45510626	43	2.2	43	79	3	102	23	20	24	32	1.98
45510830--45510873	19	2.3	18	84	7	52	47	2	15	34	1.58
45518575--45518684	42	2.6	43	79	12	120	24	17	23	34	1.96
45522884--45523021	69	2.0	68	92	1	231	45	15	7	31	1.73
45532694--45532756	30	2.1	30	96	0	117	26	3	12	57	1.51
45532806--45532839	12	2.8	12	90	0	50	67	0	0	32	0.91
45539380--45539417	14	2.9	13	81	11	51	57	10	13	18	1.63
45551690--45551824	50	2.8	49	83	5	168	22	31	18	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45551685--45551860	47	3.7	48	80	8	173	23	30	19	27	1.98
45554518--45554615	28	3.5	29	79	9	105	28	15	26	29	1.96
45559250--45559284	18	1.9	18	100	0	70	34	8	22	34	1.85
45562200--45562298	28	3.5	29	82	6	114	28	15	26	30	1.96
45572885--45573016	29	4.6	29	83	1	149	25	32	16	25	1.96
45580828--45580930	29	3.6	29	80	2	91	25	33	17	24	1.96
45587822--45587873	26	2.0	27	92	3	88	42	17	21	19	1.89
45587899--45587956	26	2.2	26	87	3	80	39	18	18	22	1.92
45587794--45588036	81	3.0	81	92	1	389	34	18	25	21	1.96
45587980--45588063	27	3.1	27	81	3	107	40	22	17	19	1.91
45588053--45588118	27	2.4	27	90	5	98	36	15	21	27	1.93
45591628--45591811	39	4.6	39	91	1	260	23	30	21	24	1.99
45599697--45599890	39	4.9	39	90	0	271	23	31	21	23	1.98
45601615--45601823	46	4.5	45	76	11	140	27	17	29	25	1.98
45604725--45604898	46	3.7	46	77	6	154	22	29	21	27	1.99
45605339--45605395	25	2.3	25	96	0	105	22	14	14	49	1.79
45613845--45613899	21	2.6	21	97	0	101	12	43	29	14	1.82
45613889--45614029	55	2.6	55	81	5	169	17	30	25	26	1.97
45615701--45615799	29	3.5	28	83	5	119	29	16	26	28	1.97
45623866--45623987	46	2.6	46	83	7	131	23	28	19	27	1.98
45629435--45629619	40	4.7	40	87	6	218	25	21	27	25	2.00
45629435--45629619	79	2.3	80	81	9	218	25	21	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45629488--45629638	40	3.8	39	86	6	112	26	21	27	25	1.99
45629469--45629638	79	2.1	80	81	9	197	27	21	25	25	1.99
45637659--45637843	40	4.7	40	84	7	184	25	21	26	26	1.99
45637693--45637878	79	2.3	78	78	12	191	29	20	24	25	1.99
45639625--45639756	29	4.6	29	86	0	156	25	15	33	25	1.95
45647229--45647322	29	3.2	29	95	0	161	29	15	28	25	1.96
45647225--45647352	58	2.2	58	81	4	152	28	15	32	24	1.95
45651828--45651965	27	5.1	27	79	1	152	39	21	17	21	1.93
45651828--45651967	54	2.6	54	85	1	174	38	21	17	22	1.93
45651898--45651993	27	3.6	27	84	5	122	37	16	18	27	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345