Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  184  of  345  ( 41379 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52345181--52345361
40
4.6
40
88
2
258
25
25
23
25
2.00
52353137--52353317
40
4.6
40
88
2
258
25
25
23
25
2.00
52361094--52361274
40
4.6
40
88
2
258
25
25
23
25
2.00
52364702--52364967
40
6.6
40
84
10
353
26
28
22
22
1.99
52364702--52364963
81
3.2
82
91
4
408
25
28
22
22
1.99
52368979--52369139
29
5.6
29
87
1
207
26
32
16
25
1.96
52376226--52376386
29
5.6
29
87
1
207
26
32
16
25
1.96
52378398--52378472
28
2.7
27
77
4
96
24
22
14
38
1.92
52381318--52381480
45
3.7
44
90
2
247
25
27
23
23
2.00
52390532--52390595
31
2.1
31
96
0
119
43
4
12
39
1.63
52392911--52392949
17
2.4
17
91
4
62
64
7
2
25
1.33
52394784--52394817
11
3.1
11
82
0
50
0
14
0
85
0.60
52398635--52398744
40
2.8
40
85
0
148
23
26
23
26
2.00
52401957--52402194
49
4.8
49
84
2
278
26
17
26
28
1.98
52404981--52405173
40
4.8
40
82
6
223
26
27
20
24
1.99
52404955--52405175
78
2.8
79
79
9
227
26
27
20
25
1.99
52406286--52406405
58
2.1
58
96
0
222
30
30
14
25
1.95
52408530--52408585
15
3.7
15
79
15
71
10
14
12
62
1.55
52410692--52410936
98
2.5
100
86
2
343
26
18
26
28
1.98
52410693--52410923
49
4.7
49
85
3
293
25
18
27
28
1.98
52411906--52411968
27
2.3
27
80
0
72
34
15
20
28
1.94
52417230--52417390
43
3.8
44
78
6
143
23
15
25
35
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52424277--52424454
40
4.5
40
83
4
191
25
27
20
25
1.99
52426456--52426728
48
5.7
48
81
6
250
22
27
22
28
1.99
52426456--52426794
96
3.5
95
78
4
324
23
27
21
28
1.99
52427472--52427545
37
2.0
36
94
2
130
48
14
10
25
1.77
52428661--52428880
43
5.2
43
68
14
170
25
27
19
28
1.98
52428707--52428838
41
3.2
40
71
12
122
26
26
19
27
1.99
52428659--52428853
42
4.7
40
69
14
117
26
26
18
28
1.98
52428659--52428893
84
2.8
84
92
0
380
25
27
19
27
1.99
52428659--52428921
84
3.1
84
86
4
343
26
27
19
26
1.99
52434915--52435046
42
3.1
42
68
12
117
25
29
18
27
1.98
52434925--52435055
41
3.1
41
67
12
113
25
29
17
27
1.97
52434894--52435126
84
2.8
84
89
0
358
27
27
17
27
1.97
52436988--52437017
15
2.1
15
93
6
53
36
26
6
30
1.82
52437120--52437259
48
2.9
47
77
6
147
28
28
17
25
1.97
52444429--52444597
46
3.7
44
77
7
160
26
30
18
24
1.98
52444430--52444643
94
2.3
90
81
6
234
25
29
18
26
1.98
52450120--52450271
40
3.8
40
81
3
162
28
23
25
23
1.99
52450120--52450273
80
1.9
80
83
0
200
29
22
25
22
1.99
52456668--52456735
24
2.7
23
82
15
73
17
23
20
38
1.93
52456852--52456972
6
19.8
6
66
27
60
19
16
14
49
1.79
52456852--52456952
29
3.4
29
80
16
118
19
17
12
49
1.79
52458941--52458973
15
2.1
16
88
5
50
30
15
9
45
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52458988--52459400
27
15.6
27
84
7
537
26
23
9
39
1.86
52458988--52459400
53
7.8
53
87
9
551
26
23
9
39
1.86
52458957--52459400
79
5.6
79
83
8
534
27
22
9
40
1.84
52459409--52459574
27
6.2
26
84
6
172
36
16
19
26
1.93
52459407--52459576
54
3.2
54
83
4
202
37
17
20
25
1.94
52459773--52459855
27
3.1
26
89
5
121
19
22
21
36
1.95
52459942--52460000
22
2.7
22
81
0
64
20
25
22
32
1.98
52460165--52460238
27
2.8
27
85
6
89
17
24
21
36
1.95
52460355--52460486
6
21.8
6
75
18
123
20
16
13
49
1.79
52460355--52460486
30
4.4
30
93
4
205
20
16
13
49
1.79
52462454--52462923
53
8.9
53
88
7
651
26
22
9
40
1.85
52462451--52462923
27
18.0
27
83
9
613
26
23
9
40
1.85
52462938--52463123
27
7.0
27
85
2
232
36
19
19
24
1.95
52462931--52463123
79
2.4
80
83
2
235
36
19
19
25
1.95
52463322--52463403
26
3.1
26
87
6
112
19
21
21
36
1.95
52463491--52463549
22
2.7
22
81
0
64
20
25
22
32
1.98
52463714--52463787
27
2.8
27
85
6
89
17
24
21
36
1.95
52463905--52464036
6
21.8
6
75
18
123
20
16
13
49
1.79
52463905--52464036
30
4.4
30
93
4
205
20
16
13
49
1.79
52466048--52466478
27
16.0
27
82
3
467
28
22
9
40
1.85
52466051--52466479
54
8.0
54
86
1
531
28
22
9
40
1.84
52466487--52466679
27
7.2
27
81
6
198
36
18
20
25
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52466495--52466680
53
3.5
53
84
5
234
35
18
20
24
1.95
52466879--52466961
27
3.1
26
87
5
112
20
22
20
36
1.95
52467049--52467107
22
2.7
22
81
0
64
20
25
22
32
1.98
52467272--52467345
27
2.8
27
83
6
80
17
22
21
37
1.94
52467463--52467599
6
22.8
6
73
19
117
20
16
13
49
1.79
52467463--52467573
35
3.3
35
90
8
160
21
16
13
48
1.80
52467463--52467599
30
4.4
31
85
11
181
20
16
13
49
1.79
52467463--52467620
30
5.1
30
84
11
167
20
16
13
49
1.79
52471764--52471895
29
4.6
29
88
0
165
29
15
31
24
1.95
52477051--52477105
8
6.4
8
85
8
56
61
0
0
38
0.96
52477051--52477096
5
9.0
5
86
13
67
58
0
0
41
0.98
52477058--52477104
13
3.5
13
83
11
58
61
0
0
38
0.96
52477051--52477120
23
3.2
23
77
15
60
64
1
0
34
1.03
52477076--52477122
18
2.7
18
83
6
53
70
2
0
27
0.99
52477057--52477121
28
2.4
28
81
2
78
66
1
0
32
1.01
52493867--52493961
40
2.4
39
84
3
111
37
36
11
13
1.81
52500895--52500930
17
2.1
17
89
0
54
13
47
25
13
1.80
52502905--52503036
29
4.6
29
82
0
147
24
33
15
26
1.95
52510803--52510934
29
4.6
29
82
0
147
24
33
15
26
1.95
52515466--52515523
29
2.0
30
82
3
73
32
15
25
25
1.95
52515866--52516033
47
3.6
45
78
16
157
27
19
29
23
1.98
52515864--52516034
94
1.8
93
88
5
265
26
19
29
23
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52515861--52516073
94
2.3
93
81
5
250
28
19
28
23
1.98
52517245--52517690
47
9.4
47
95
1
768
28
31
7
32
1.86
52517245--52517690
237
1.9
237
95
0
813
28
31
7
32
1.86
52521743--52521894
40
3.8
40
92
0
243
25
28
23
22
1.99
52522670--52522698
9
3.3
9
95
4
51
0
6
0
93
0.36
52523750--52524100
47
7.4
47
94
3
589
27
31
7
33
1.85
52523750--52524100
142
2.5
143
94
2
620
27
31
7
33
1.85
52525183--52525214
16
2.0
16
100
0
64
50
12
12
25
1.75
52529165--52529341
40
4.4
40
83
4
225
25
27
22
24
2.00
52540375--52540516
40
3.6
40
91
2
225
26
27
22
23
2.00
52543410--52543519
40
2.8
40
85
0
148
23
26
23
26
2.00
52551465--52551574
40
2.8
40
85
0
148
23
26
23
26
2.00
52559673--52559814
40
3.6
40
92
2
225
26
27
22
23
2.00
52561434--52561536
29
3.6
28
80
5
116
29
33
16
21
1.95
52573578--52573750
46
3.7
46
80
6
188
28
20
28
21
1.98
52573578--52573797
46
4.7
46
76
11
182
29
20
28
22
1.98
52574283--52574325
21
2.2
20
84
16
54
62
2
11
23
1.40
52588835--52588939
42
2.5
42
79
4
113
25
20
26
26
1.99
52590427--52590478
10
5.1
10
85
2
59
69
1
7
21
1.24
52590429--52590466
20
1.9
20
94
0
67
71
2
7
18
1.23
52590429--52590478
20
2.5
20
87
6
66
70
2
8
20
1.23
52604066--52604133
29
2.3
29
82
10
84
23
16
7
52
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52608148--52608181
17
1.9
18
88
5
52
38
11
5
44
1.65
52608127--52608181
19
3.1
17
78
7
56
34
12
9
43
1.74
52616022--52616152
29
4.5
29
78
5
122
25
17
32
25
1.97
52631250--52631359
42
2.6
42
74
9
107
29
22
22
25
1.99
52633029--52633186
43
3.7
44
79
9
166
25
16
26
31
1.96
52633920--52633994
38
2.0
38
100
0
150
18
13
21
46
1.83
52634394--52634427
2
17.0
2
93
0
59
47
0
2
50
1.16
52640231--52640406
46
3.8
46
81
10
232
20
21
29
28
1.98
52640227--52640398
93
1.8
93
96
0
317
20
22
30
27
1.98
52643349--52643417
15
4.6
15
83
0
84
11
17
13
57
1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345