genome.fa.s12.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  121  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32207717--32207798	35	2.3	36	83	8	105	37	36	10	14	1.82
32215642--32215726	42	2.0	42	100	0	170	30	24	9	35	1.87
32216995--32217054	28	2.2	27	90	3	93	31	23	25	20	1.98
32222296--32222470	92	1.9	93	85	4	246	22	32	19	25	1.98
32222296--32222472	46	3.8	44	78	14	155	22	32	19	25	1.97
32228071--32228137	20	3.3	20	68	4	62	20	31	11	35	1.89
32228091--32228157	21	3.2	21	70	4	55	26	32	10	29	1.90
32228062--32228266	41	5.0	41	81	4	227	21	27	14	36	1.93
32228857--32228884	2	14.0	2	100	0	56	50	0	0	50	1.00
32231275--32231438	71	2.3	71	100	0	328	18	28	17	35	1.94
32231275--32231472	71	2.8	70	91	3	258	20	28	17	33	1.95
32238380--32238543	71	2.3	71	100	0	328	18	28	17	35	1.94
32238380--32238577	71	2.8	70	91	3	258	20	28	17	33	1.95
32241392--32241476	28	3.1	28	82	1	91	25	3	10	60	1.46
32244716--32244836	41	3.0	41	78	0	143	20	28	18	32	1.96
32245702--32245757	25	2.3	24	90	3	85	26	32	30	10	1.90
32248571--32248635	30	2.1	31	94	2	114	46	4	24	24	1.72
32250243--32250272	15	2.0	15	100	0	60	33	6	13	46	1.69
32253782--32253891	55	2.0	55	100	0	220	21	23	16	38	1.93
32264024--32264071	3	16.0	3	100	0	96	0	33	0	66	0.92
32266562--32266629	33	2.1	33	100	0	136	19	17	23	39	1.92
32274157--32274297	69	2.0	69	97	0	264	34	10	16	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32275741--32275798	24	2.6	21	76	15	62	55	3	39	1	1.27
32279155--32279321	40	4.2	39	88	3	235	32	18	28	20	1.96
32279184--32279245	20	3.1	20	65	9	54	25	17	35	20	1.95
32279155--32279321	80	2.1	80	90	3	264	32	18	28	20	1.96
32281186--32281227	19	2.3	18	88	11	68	38	21	14	26	1.91
32281192--32281230	19	2.1	19	100	0	78	35	20	15	28	1.93
32293614--32293643	10	2.8	11	90	10	53	83	0	0	16	0.65
32297514--32297548	6	5.8	6	100	0	70	31	51	0	17	1.45
32303506--32303998	248	2.0	248	91	2	794	37	19	14	28	1.91
32313789--32313852	3	21.3	3	100	0	128	32	0	0	67	0.91
32323905--32323932	2	14.0	2	100	0	56	50	0	0	50	1.00
32325359--32325407	19	2.4	21	86	10	66	6	12	6	75	1.17
32325457--32325492	18	2.1	18	89	5	56	41	0	2	55	1.14
32327432--32327526	48	2.0	48	93	0	163	44	15	9	30	1.79
32330512--32330719	27	7.7	27	83	3	240	38	18	9	33	1.83
32330511--32330717	80	2.6	81	87	2	283	39	18	9	32	1.83
32330512--32330745	54	4.3	55	81	5	230	38	19	10	32	1.85
32344200--32344227	14	2.0	14	100	0	56	28	14	14	42	1.84
32345252--32345317	22	3.1	22	72	10	57	53	4	4	37	1.42
32345288--32346160	431	2.0	433	98	0	1696	41	9	9	39	1.71
32354469--32354532	21	3.0	21	63	24	53	17	9	29	43	1.80
32354467--32354548	42	2.0	42	97	0	155	17	8	31	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32365352--32365519	40	4.2	40	85	5	198	26	27	22	23	1.99
32365352--32365519	80	2.1	80	86	4	232	26	27	22	23	1.99
32373329--32373493	40	4.2	39	81	9	176	27	27	21	23	1.99
32373329--32373493	38	4.2	38	81	12	169	27	27	21	23	1.99
32379509--32379553	22	2.0	22	82	0	54	51	4	4	40	1.42
32385178--32385223	5	9.2	5	100	0	92	39	0	0	60	0.97
32386774--32386864	42	2.1	44	88	10	134	18	19	20	40	1.91
32387048--32387142	18	5.3	18	73	14	70	35	11	14	37	1.83
32388561--32388588	2	14.0	2	100	0	56	50	0	0	50	1.00
32391319--32391348	10	2.9	10	95	5	51	40	0	0	60	0.97
32391367--32391403	5	7.2	5	96	3	65	40	0	0	59	0.97
32391306--32391408	53	1.9	55	84	15	144	39	0	3	55	1.25
32392486--32392511	2	13.0	2	100	0	52	50	0	0	50	1.00
32393199--32393385	18	10.1	18	67	12	74	35	11	14	37	1.83
32393301--32393371	36	2.0	36	82	0	88	33	11	15	39	1.83
32393313--32393381	36	1.9	36	81	0	84	36	8	14	40	1.77
32395279--32395329	21	2.4	21	76	0	57	13	27	21	37	1.91
32401337--32401428	42	2.2	42	94	0	157	25	29	26	19	1.99
32401337--32401449	42	2.7	42	85	10	126	22	29	24	23	1.99
32404313--32404349	2	18.5	2	100	0	74	51	48	0	0	1.00
32405037--32405231	95	2.1	95	96	0	356	30	28	24	15	1.96
32407781--32407828	4	12.0	4	100	0	96	25	0	25	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32409548--32409579	5	6.6	5	92	7	57	81	0	0	18	0.70
32409549--32409579	9	3.3	9	95	4	53	80	0	0	19	0.71
32413995--32414026	5	6.6	5	92	7	57	81	0	0	18	0.70
32413996--32414026	14	2.2	14	100	0	62	80	0	0	19	0.71
32414584--32414620	2	18.5	2	100	0	74	48	0	0	51	1.00
32418221--32418250	15	2.0	15	100	0	60	40	6	6	46	1.56
32422537--32422581	14	3.2	14	83	0	54	42	20	0	37	1.52
32431850--32431880	15	2.1	15	93	0	53	45	32	6	16	1.72
32433227--32433271	22	2.1	21	83	4	54	60	0	4	35	1.17
32435422--32435509	43	2.0	45	82	8	110	26	26	15	31	1.96
32435177--32435741	170	3.2	172	83	6	678	28	24	17	30	1.97
32435599--32435693	43	2.2	45	84	3	122	28	24	14	32	1.95
32436909--32437001	47	2.0	47	91	4	152	15	24	19	40	1.90
32447632--32447804	93	1.9	93	88	2	267	22	19	28	28	1.98
32447635--32447811	46	3.8	45	76	10	169	22	19	28	29	1.98
32454231--32454255	2	12.5	2	100	0	50	52	0	0	48	1.00
32456025--32456053	13	2.3	13	94	5	51	10	0	13	75	1.04
32462810--32463035	122	1.9	121	87	1	337	41	8	19	30	1.82
32466727--32466938	106	2.0	106	89	1	327	42	12	15	29	1.83
32476497--32476524	5	5.6	5	100	0	56	0	0	21	78	0.75
32478788--32478975	40	4.7	40	91	3	308	25	27	22	24	2.00
32485502--32485526	6	4.2	6	100	0	50	20	0	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32497067--32497103	2	18.5	2	94	0	65	48	0	2	48	1.15
32497880--32497913	17	1.9	17	88	5	50	52	8	2	35	1.47
32508350--32508426	38	2.0	38	100	0	154	36	12	5	45	1.65
32510969--32511021	20	2.7	20	90	0	79	69	7	13	9	1.35
32511297--32511336	16	2.5	16	84	11	55	45	0	2	52	1.14
32511616--32511650	17	2.1	17	94	0	61	40	14	5	40	1.69
32511643--32511674	2	16.0	2	100	0	64	50	0	0	50	1.00
32513385--32513422	16	2.4	16	86	8	51	42	0	23	34	1.55
32515891--32515948	29	2.0	29	96	3	109	20	12	0	67	1.22
32515892--32515944	15	3.6	15	75	14	65	18	9	0	71	1.12
32515876--32515946	29	2.3	33	73	19	87	19	9	1	69	1.25
32518212--32518248	16	2.3	16	95	0	65	2	27	0	70	1.01
32518288--32518338	3	18.0	3	77	18	56	35	0	1	62	1.06
32526570--32526610	21	2.0	21	90	0	64	19	29	21	29	1.98
32535943--32536109	75	2.2	75	84	6	205	34	22	19	23	1.97
32540791--32540909	33	3.6	32	75	15	100	29	10	42	18	1.83
32542916--32542979	22	2.9	22	77	13	60	62	4	0	32	1.16
32542953--32542994	16	2.9	15	86	13	61	59	7	0	33	1.25
32543042--32543706	112	5.9	113	94	2	1049	51	15	1	32	1.51
32543042--32543706	223	2.9	224	92	3	1070	51	15	1	32	1.51
32543796--32543862	14	4.7	14	92	3	107	35	8	19	35	1.83
32543796--32543862	29	2.4	28	94	2	116	35	8	19	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32543953--32543994	22	1.9	22	100	0	84	50	0	0	50	1.00
32545416--32545457	21	2.0	21	86	9	59	52	16	0	30	1.44
32545426--32545491	25	3.0	21	75	16	78	54	15	1	28	1.50
32545465--32545525	32	1.9	32	86	0	86	57	16	1	24	1.48
32549848--32549908	3	19.3	3	73	9	50	1	40	0	57	1.08
32549848--32549882	13	2.7	13	81	0	52	0	40	0	60	0.97
32549848--32549921	16	4.7	15	77	11	69	1	41	0	56	1.07
32549860--32549915	22	2.5	22	85	0	85	1	41	0	57	1.09
32560136--32560295	40	4.0	40	90	1	239	30	23	26	20	1.99
32560283--32560318	18	2.1	17	89	5	54	27	36	27	8	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345