genome.fa.s12.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  141  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38357186--38357259	29	2.6	29	89	4	105	27	16	31	25	1.96
38358841--38358900	27	2.3	27	85	2	77	36	6	23	33	1.81
38358855--38358942	27	3.3	26	84	6	104	39	4	25	30	1.75
38358831--38358969	54	2.6	53	75	7	136	35	7	23	33	1.82
38359324--38359617	147	2.0	147	100	0	588	23	32	16	27	1.96
38363510--38363722	40	5.5	39	76	13	172	23	25	23	26	2.00
38363573--38363713	74	1.9	75	86	1	203	25	26	22	25	2.00
38365912--38366032	37	3.3	37	96	1	217	21	33	19	25	1.97
38366134--38366445	49	6.4	49	95	0	545	29	33	8	28	1.87
38366129--38366445	146	2.2	147	93	4	559	29	33	8	28	1.87
38369685--38369802	41	3.1	41	60	28	98	32	17	28	21	1.96
38369653--38369816	71	2.3	71	100	0	328	35	17	28	18	1.94
38377955--38378287	47	7.3	47	90	4	495	27	28	8	35	1.87
38381795--38382222	40	10.7	40	91	1	581	24	28	21	25	1.99
38382277--38382350	38	1.9	38	84	10	98	22	25	18	32	1.97
38384606--38384994	47	8.3	47	92	0	625	27	28	8	35	1.86
38385441--38385468	13	2.2	13	100	0	56	28	17	21	32	1.96
38389968--38389997	15	2.0	15	93	0	51	3	13	33	50	1.58
38392125--38392255	30	4.5	30	86	8	171	32	13	25	28	1.94
38392125--38392255	58	2.2	58	86	4	174	32	13	25	28	1.94
38399906--38400036	30	4.5	30	86	8	171	32	13	25	28	1.94
38399906--38400036	58	2.2	58	86	4	174	32	13	25	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38406925--38407498	48	11.9	48	93	2	922	33	6	29	30	1.82
38406927--38407498	238	2.4	239	94	2	984	33	6	29	30	1.82
38407639--38407741	37	2.8	37	95	0	179	24	20	31	24	1.98
38409018--38409296	40	7.0	40	92	0	441	21	21	29	27	1.99
38411616--38412318	48	14.8	48	92	2	1172	33	5	29	30	1.81
38411616--38412318	94	7.4	95	93	2	1143	33	5	29	30	1.81
38411616--38412318	142	4.9	143	93	2	1161	33	5	29	30	1.81
38412458--38412597	37	3.8	37	96	0	244	25	20	30	24	1.98
38423229--38423257	9	3.3	9	95	4	51	24	31	10	34	1.89
38426007--38426074	28	2.5	28	92	2	111	20	10	25	44	1.83
38426710--38426863	54	2.9	54	94	0	263	31	8	21	38	1.83
38426713--38426863	27	5.6	27	85	0	212	31	7	21	39	1.82
38426858--38427098	27	8.9	27	85	0	311	41	9	22	27	1.84
38426723--38426890	81	2.1	81	81	2	194	34	7	19	38	1.81
38426856--38427120	81	3.3	81	83	6	356	39	9	23	27	1.85
38426857--38427106	54	4.6	54	91	0	401	40	8	22	28	1.84
38434637--38434777	43	3.3	43	71	16	121	37	19	21	20	1.94
38434661--38434805	44	3.3	43	75	9	125	35	22	23	17	1.95
38437098--38437150	2	27.0	2	84	3	72	43	0	3	52	1.19
38437419--38437443	13	1.9	13	100	0	50	32	20	0	48	1.50
38442534--38442761	49	4.6	51	79	7	247	30	27	16	25	1.97
38459658--38459938	48	5.9	48	95	0	490	35	6	27	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38460081--38460181	37	2.7	37	95	0	175	24	18	32	23	1.97
38465473--38465670	102	1.9	102	93	0	342	15	26	28	29	1.96
38471342--38471439	19	5.2	19	90	7	155	36	10	17	35	1.84
38471342--38471439	36	2.6	37	88	9	144	36	10	17	35	1.84
38477036--38477091	18	3.1	18	82	14	71	85	0	14	0	0.59
38477036--38477091	29	1.9	28	89	7	85	85	0	14	0	0.59
38478051--38478190	43	3.3	43	66	11	126	30	20	22	26	1.99
38478041--38478485	84	5.3	84	88	6	654	29	23	23	23	1.99
38478041--38478485	166	2.7	166	87	7	609	29	23	23	23	1.99
38478048--38478438	41	9.4	42	63	18	165	29	23	22	24	1.99
38479221--38479291	19	3.8	19	92	7	128	38	11	15	35	1.83
38479221--38479300	19	4.1	22	88	11	83	38	10	16	35	1.82
38480803--38480842	17	2.3	17	82	4	53	10	27	45	17	1.80
38488194--38488361	40	4.2	40	79	3	160	23	26	23	27	2.00
38488210--38488359	80	1.9	80	83	8	198	22	26	24	27	1.99
38496198--38496365	40	4.2	40	77	3	151	22	26	23	27	2.00
38498915--38499016	29	3.5	29	77	2	98	35	43	0	21	1.53
38498941--38499015	7	10.4	7	77	5	69	36	42	0	21	1.53
38498944--38499015	22	3.3	21	83	7	81	37	40	0	22	1.54
38503299--38503464	46	3.6	46	71	8	156	31	27	18	21	1.97
38503304--38503474	93	1.8	93	89	0	270	30	28	18	21	1.97
38503879--38503938	30	2.0	30	90	0	93	30	26	8	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38510815--38510992	46	3.8	46	75	7	189	29	28	19	23	1.98
38512738--38512838	28	3.5	28	86	6	114	29	13	26	29	1.94
38515265--38515334	28	2.4	29	90	6	108	30	14	25	30	1.95
38517759--38517828	28	2.4	29	90	6	108	30	14	25	30	1.95
38520261--38520330	28	2.4	29	90	6	108	30	14	25	30	1.95
38522059--38522118	30	2.0	30	90	0	93	30	26	8	35	1.86
38527180--38527330	43	3.5	44	81	14	172	32	24	18	24	1.97
38529792--38529824	13	2.6	13	90	4	50	39	0	12	48	1.40
38531368--38531485	31	3.5	35	89	9	135	22	23	16	37	1.94
38531391--38531485	31	3.1	31	98	0	181	23	22	15	38	1.92
38531677--38531843	24	7.0	24	90	3	239	26	21	22	29	1.99
38531676--38531843	71	2.3	71	88	4	239	26	21	22	29	1.99
38531894--38531953	20	3.0	20	92	0	102	33	20	13	33	1.91
38533282--38533600	27	11.8	27	84	4	356	39	7	23	28	1.83
38533551--38533828	27	10.3	27	83	3	235	31	8	20	39	1.82
38533596--38533827	81	2.9	80	83	5	263	30	7	21	40	1.81
38533678--38533846	54	3.2	53	89	3	232	31	6	18	42	1.76
38537659--38537804	75	2.0	75	95	1	267	27	11	35	25	1.91
38538663--38538712	22	2.3	22	75	0	55	14	28	24	34	1.93
38539147--38539205	24	2.5	24	100	0	118	33	0	37	28	1.58
38540625--38540736	27	4.1	27	83	7	138	16	23	22	38	1.93
38540625--38540736	54	2.1	54	88	3	163	16	23	22	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38544851--38544921	24	3.0	24	95	0	124	35	1	38	25	1.65
38544851--38544944	48	1.9	48	81	10	111	35	4	37	23	1.75
38546331--38546442	27	4.1	27	84	7	138	15	24	23	37	1.93
38546331--38546442	54	2.1	54	88	3	163	15	24	23	37	1.93
38551144--38551282	40	3.5	39	86	4	165	23	23	29	23	1.99
38556977--38557013	18	2.1	18	100	0	74	43	18	21	16	1.88
38559176--38559366	40	4.8	39	77	7	163	24	21	28	25	1.99
38562308--38562361	25	2.3	23	81	12	56	35	16	27	20	1.94
38563693--38563919	25	9.1	25	77	3	179	35	21	16	26	1.94
38563696--38563936	100	2.4	100	84	4	283	34	20	16	28	1.94
38579876--38580092	46	4.7	43	76	11	148	23	29	18	28	1.98
38579924--38580100	46	3.8	45	76	11	162	24	29	18	27	1.98
38582270--38582572	40	7.6	41	93	2	437	27	26	22	23	2.00
38586149--38586198	26	2.0	26	81	14	61	60	2	8	30	1.37
38586259--38586356	25	4.1	24	72	14	69	55	5	7	32	1.49
38587282--38587306	13	1.9	13	100	0	50	72	0	8	20	1.10
38588500--38588660	86	1.9	87	84	6	220	28	23	18	29	1.98
38592518--38592569	25	2.1	25	100	0	104	30	11	7	50	1.67
38593925--38594053	50	2.5	51	93	2	224	34	17	24	24	1.96
38594029--38594115	31	2.8	31	80	0	111	29	19	24	26	1.98
38594137--38594346	47	4.6	47	82	8	184	29	16	25	29	1.97
38594276--38594390	42	2.7	42	85	6	153	31	15	25	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38596455--38596562	26	4.2	26	91	0	180	33	6	24	36	1.81
38598187--38598327	27	5.2	27	81	11	173	19	24	21	34	1.97
38598184--38598317	54	2.5	54	92	3	218	19	25	21	33	1.97
38598190--38598345	81	1.9	80	83	8	201	21	24	20	33	1.97
38601114--38601307	40	4.8	40	85	3	232	27	23	27	21	1.99
38601114--38601360	40	6.2	40	81	5	198	27	24	26	21	1.99
38601276--38601373	39	2.5	40	73	8	103	30	25	25	18	1.98
38606983--38607030	24	2.0	24	83	0	60	14	20	16	47	1.82
38607175--38607220	19	2.4	20	89	7	69	52	6	19	21	1.69
38610868--38610999	29	4.6	29	83	1	149	25	32	16	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345