genome.fa.s12.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  160  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44452324--44452538	47	4.7	44	76	14	129	24	29	17	28	1.97
44452377--44452491	46	2.5	44	84	6	142	26	27	17	27	1.98
44452419--44452541	46	2.7	46	83	5	140	25	30	16	28	1.96
44459607--44459640	17	1.9	18	88	5	52	38	5	5	50	1.51
44462348--44462387	8	5.0	8	81	0	53	2	20	22	55	1.56
44462351--44462387	16	2.3	16	95	0	65	2	18	18	59	1.50
44463168--44463254	42	2.1	41	81	10	97	66	0	26	6	1.16
44468327--44468508	39	4.6	39	87	0	229	21	31	22	23	1.98
44468357--44468508	39	3.9	39	90	0	232	22	32	21	23	1.98
44471393--44471555	39	4.2	39	88	0	245	22	20	32	24	1.98
44489202--44489384	100	1.8	100	93	0	321	30	26	19	24	1.98
44489205--44489386	49	3.7	49	84	2	247	29	26	18	24	1.98
44489612--44489665	27	2.0	27	85	0	72	37	14	7	40	1.74
44494735--44494828	29	3.2	29	98	0	179	29	15	27	26	1.96
44494731--44494865	58	2.3	58	84	3	175	26	15	31	25	1.96
44502568--44502632	29	2.2	29	94	0	112	30	16	26	26	1.97
44504528--44504759	49	4.7	49	81	3	284	29	27	18	25	1.98
44504528--44504759	100	2.3	98	84	2	302	29	27	18	25	1.98
44510556--44510588	17	2.0	17	88	5	50	66	6	6	21	1.35
44514511--44514559	23	2.2	23	85	3	64	42	20	20	16	1.89
44514752--44514785	17	2.0	17	100	0	68	23	17	5	52	1.66
44517660--44517719	20	3.0	20	85	2	57	46	21	21	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44521482--44521545	28	2.3	28	88	0	92	17	25	21	35	1.95
44525846--44525881	5	7.2	5	100	0	72	19	0	0	80	0.71
44534930--44534977	24	1.9	26	91	8	82	54	0	6	39	1.26
44534941--44534977	11	3.0	13	76	15	51	51	0	5	43	1.24
44542641--44542770	40	3.2	40	84	4	174	22	24	29	23	1.99
44553325--44553435	40	2.8	41	87	6	149	22	26	29	21	1.99
44561150--44561226	37	2.1	36	95	2	136	24	20	12	41	1.88
44564390--44564535	41	3.6	41	84	3	168	19	20	23	36	1.95
44564933--44564957	2	12.5	2	100	0	50	48	0	0	52	1.00
44567673--44567725	25	2.2	25	93	3	90	43	1	32	22	1.64
44570075--44570188	62	1.9	59	85	5	156	50	5	4	39	1.45
44571693--44571868	46	3.8	46	81	10	214	21	21	28	28	1.98
44571690--44571861	93	1.8	93	94	0	308	21	21	29	27	1.99
44576226--44576389	43	3.8	43	81	1	177	33	22	16	27	1.95
44576409--44576507	42	2.3	43	77	6	112	20	15	23	41	1.89
44580307--44580531	50	4.5	48	80	10	247	29	25	19	25	1.98
44580295--44580535	100	2.4	98	84	6	290	29	25	19	25	1.99
44582436--44582522	42	2.1	42	93	4	149	28	27	22	20	1.99
44583555--44583623	23	3.0	23	70	8	68	34	21	20	23	1.96
44587846--44588054	9	23.3	9	72	13	139	35	0	17	46	1.55
44587859--44588054	36	5.5	36	79	12	208	35	1	16	46	1.54
44589786--44589825	19	2.1	19	85	0	53	32	0	42	25	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44589934--44590287	122	2.9	121	82	2	395	31	18	16	33	1.93
44590794--44590827	2	17.0	2	100	0	68	50	0	0	50	1.00
44590916--44590948	12	2.6	13	85	4	50	33	51	0	15	1.43
44590952--44591013	22	2.9	22	80	7	65	53	30	1	14	1.51
44591050--44591088	15	2.7	15	84	4	53	48	28	5	17	1.68
44591151--44591262	41	2.8	41	85	4	140	17	24	19	38	1.93
44599440--44599468	2	14.5	2	100	0	58	48	0	0	51	1.00
44600582--44601050	104	4.5	104	86	1	555	30	19	21	28	1.97
44600533--44601050	208	2.5	207	83	2	617	30	18	21	29	1.97
44602647--44602813	43	3.9	43	80	3	185	33	25	13	28	1.93
44605396--44605579	85	2.2	86	88	2	273	30	29	19	20	1.97
44605396--44605580	43	4.3	43	88	2	275	30	29	19	21	1.97
44610794--44611049	7	35.9	7	70	11	72	41	35	1	21	1.63
44610931--44611049	14	8.4	14	77	10	89	47	30	2	20	1.63
44611364--44611465	40	2.5	40	83	0	114	27	20	22	29	1.99
44611523--44611639	40	2.9	40	79	2	119	28	21	21	29	1.98
44615164--44615198	17	2.1	17	100	0	70	45	31	5	17	1.71
44619174--44619211	20	1.9	19	89	5	58	15	7	2	73	1.17
44619205--44619255	23	2.2	24	82	10	61	29	5	0	64	1.17
44626379--44626537	43	3.7	43	82	2	176	34	26	11	27	1.91
44629997--44630021	13	1.9	13	100	0	50	32	0	20	48	1.50
44636615--44636758	39	3.7	39	90	0	234	26	20	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44638585--44638624	20	1.9	20	85	10	53	72	0	15	12	1.12
44639246--44639277	2	16.0	2	100	0	64	50	0	0	50	1.00
44639731--44639802	29	2.5	29	88	4	101	26	15	31	26	1.95
44645591--44645628	19	2.0	20	85	15	53	39	23	0	36	1.55
44645855--44646025	46	3.7	46	79	6	202	28	27	21	23	1.99
44645856--44646026	93	1.8	93	91	2	281	28	28	21	22	1.99
44649686--44649718	17	1.9	17	100	0	66	24	12	18	45	1.83
44650588--44650657	27	2.5	28	95	2	124	28	14	27	30	1.95
44650588--44650669	27	3.0	27	85	8	78	29	15	24	30	1.96
44658795--44659686	48	19.0	48	88	7	1309	36	6	25	31	1.82
44658795--44659686	146	6.3	144	89	7	1309	36	6	25	31	1.82
44658795--44659686	98	9.5	96	88	8	1309	36	6	25	31	1.82
44659138--44659206	36	1.9	36	100	0	138	39	8	26	26	1.85
44659090--44659258	84	2.0	84	100	0	338	37	8	26	28	1.85
44660358--44660395	19	2.0	20	85	15	53	39	23	0	36	1.55
44660624--44660791	46	3.6	45	78	12	180	29	28	20	22	1.98
44660625--44660795	93	1.8	93	92	0	288	29	28	20	21	1.98
44666250--44666277	14	2.0	14	100	0	56	42	28	0	28	1.56
44667762--44667792	15	2.1	15	93	0	53	51	25	3	19	1.62
44669750--44669809	30	2.0	30	90	0	93	28	25	8	38	1.84
44671098--44671203	56	1.9	56	90	0	167	32	22	16	28	1.96
44675315--44675482	40	4.2	40	77	3	151	22	26	23	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44677794--44677985	40	4.8	41	80	7	166	24	22	27	25	2.00
44677794--44677947	79	1.9	80	81	6	188	24	22	27	24	2.00
44686001--44686172	93	1.8	93	96	0	317	27	30	22	20	1.98
44685993--44686168	46	3.8	46	81	10	232	28	29	21	20	1.98
44688553--44688641	30	3.0	30	80	8	101	57	15	16	10	1.65
44688553--44688632	15	5.4	15	80	7	92	58	13	17	10	1.62
44688564--44688641	15	5.2	15	78	9	79	56	15	16	11	1.67
44691592--44691763	93	1.8	93	96	0	317	27	30	22	20	1.98
44691584--44691759	46	3.8	46	81	10	232	28	29	21	20	1.98
44694288--44694385	39	2.5	40	81	1	117	26	23	27	22	1.99
44694285--44694423	40	3.5	39	80	4	129	24	23	28	23	2.00
44697296--44697373	29	2.7	27	82	9	86	25	14	33	26	1.94
44697305--44697373	28	2.4	29	86	11	90	27	14	33	24	1.94
44701161--44701200	16	2.4	17	83	8	55	45	40	5	10	1.60
44704458--44704568	47	2.4	47	95	0	195	34	9	29	27	1.87
44706582--44706737	40	3.9	40	93	0	267	19	25	30	24	1.98
44711119--44711229	47	2.4	47	95	0	195	34	9	29	27	1.87
44713781--44713876	29	3.3	29	85	0	120	26	9	32	32	1.88
44726183--44726215	16	2.1	17	88	11	52	30	0	6	63	1.18
44726517--44726636	43	2.8	43	80	7	136	26	15	27	30	1.96
44727013--44727054	19	2.2	19	86	0	57	42	0	14	42	1.45
44730265--44730301	2	18.5	2	100	0	74	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44731123--44731207	40	2.1	40	91	0	134	25	21	21	31	1.98
44740964--44740998	2	17.5	2	100	0	70	48	0	0	51	1.00
44741811--44741895	40	2.1	40	88	0	125	24	18	22	34	1.96
44743347--44743660	46	6.7	46	74	14	200	28	19	28	23	1.98
44744816--44744855	21	2.0	20	90	5	62	15	40	22	22	1.91
44746118--44746219	27	3.8	26	85	5	123	37	21	22	18	1.94
44746382--44746442	22	2.8	22	73	9	61	36	22	21	19	1.95
44746869--44747063	27	7.3	27	88	0	275	23	21	21	34	1.96
44747047--44747396	27	12.9	26	81	5	146	35	8	20	36	1.82
44747103--44747282	82	2.2	81	81	3	191	31	9	19	40	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345