genome.fa.s12.2.7.7.80.10.50.1000.306.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  306  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92153707--92153823	47	2.5	47	98	0	225	20	17	30	30	1.96
92156235--92156492	100	2.6	100	78	0	246	27	20	17	34	1.96
92160386--92160441	18	3.4	18	65	27	52	26	46	7	19	1.76
92160379--92160474	30	3.2	30	92	0	165	27	48	6	17	1.71
92160416--92160469	18	3.3	18	66	28	57	22	48	7	22	1.75
92160958--92161009	24	2.2	23	83	10	61	36	3	0	59	1.16
92160966--92161104	48	2.9	45	74	14	118	36	5	2	54	1.39
92161024--92161109	25	3.5	25	76	10	79	38	5	2	53	1.38
92161114--92161221	22	4.9	22	72	15	80	30	5	5	58	1.44
92161120--92161211	24	3.8	23	78	13	80	31	4	5	58	1.40
92161162--92161221	23	3.0	20	73	17	61	31	5	5	58	1.41
92161338--92161372	16	2.3	15	90	5	52	31	2	2	62	1.24
92170982--92171149	46	3.6	46	79	4	185	21	20	27	29	1.98
92170979--92171150	93	1.8	93	91	0	281	21	20	28	29	1.98
92174167--92174333	72	2.3	72	87	3	226	27	17	20	34	1.95
92174313--92174357	13	3.4	13	84	6	63	15	11	4	68	1.34
92174314--92174351	14	2.8	13	88	7	58	15	13	5	65	1.43
92174313--92174360	14	3.5	13	77	5	51	18	10	4	66	1.37
92174413--92174439	14	1.9	14	100	0	54	14	7	7	70	1.32
92174252--92174528	100	2.8	98	83	3	349	24	17	18	39	1.91
92174460--92174684	76	3.0	73	87	6	297	28	17	21	32	1.96
92174799--92174936	71	1.9	71	92	0	231	34	17	18	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92174708--92175458	151	4.8	155	80	11	672	29	16	20	33	1.95
92174941--92175396	77	6.1	76	85	5	594	27	16	22	33	1.96
92174949--92175394	229	2.0	221	87	5	635	27	16	23	32	1.96
92175387--92175422	14	2.6	14	90	0	54	30	11	5	52	1.59
92175313--92175629	87	3.6	87	77	13	269	29	14	18	37	1.91
92176288--92176383	30	3.2	30	89	0	156	27	47	6	18	1.72
92176866--92176993	23	5.5	23	71	12	93	35	6	3	54	1.41
92176941--92177013	2	37.5	2	76	15	64	41	4	1	53	1.28
92176941--92177013	25	3.0	25	79	13	82	41	4	1	53	1.28
92176995--92177086	25	3.8	23	76	12	78	33	5	5	55	1.46
92181220--92181246	2	13.5	2	100	0	54	48	0	0	51	1.00
92185632--92185704	36	2.1	35	82	7	85	35	6	0	57	1.25
92187953--92187989	2	18.5	2	100	0	74	48	0	0	51	1.00
92192382--92192412	3	10.3	3	100	0	62	32	0	35	32	1.58
92196480--92196611	56	2.4	56	82	0	156	24	24	26	25	2.00
92197693--92197778	25	3.5	25	81	10	97	30	23	23	23	1.99
92199412--92199475	24	2.6	26	76	18	73	23	20	17	39	1.92
92199467--92199528	25	2.5	25	89	0	88	25	29	14	30	1.95
92200548--92200679	56	2.4	56	84	2	158	22	26	27	23	2.00
92202414--92202635	44	5.3	39	72	16	126	28	5	12	53	1.62
92202393--92202787	85	4.6	85	85	5	472	28	6	12	52	1.63
92202651--92202811	22	7.2	22	66	12	85	31	4	13	50	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92202393--92202789	171	2.3	175	84	5	504	28	6	12	52	1.63
92202411--92202846	45	10.1	43	74	11	159	29	5	12	52	1.63
92202749--92202902	42	3.6	42	79	7	141	29	9	11	50	1.68
92204497--92204544	25	1.9	25	83	8	62	43	2	0	54	1.12
92204879--92204938	28	2.1	28	90	0	93	33	18	20	28	1.96
92207262--92207344	21	4.0	22	77	11	88	43	18	21	16	1.88
92218605--92218799	43	4.5	43	83	3	214	30	25	16	27	1.97
92220150--92220203	23	2.3	23	93	0	90	22	14	37	25	1.93
92221727--92221777	16	2.9	18	77	14	52	43	1	0	54	1.11
92223157--92223197	13	3.2	13	83	13	57	41	0	2	56	1.13
92225077--92225115	2	19.5	2	100	0	78	48	0	0	51	1.00
92225560--92225595	15	2.4	15	95	0	63	61	0	38	0	0.96
92228753--92228797	22	2.0	22	83	8	56	26	8	20	44	1.80
92230841--92230865	8	3.1	8	100	0	50	52	0	24	24	1.48
92231168--92231208	21	2.0	20	90	4	64	21	26	39	12	1.89
92232344--92232490	46	3.2	45	79	10	131	25	31	16	25	1.96
92232272--92232441	46	3.7	46	76	11	127	24	30	19	25	1.98
92232420--92232535	47	2.4	47	85	1	151	28	30	13	27	1.94
92242056--92242090	18	1.9	18	88	0	52	31	20	20	28	1.97
92245458--92245489	5	6.6	5	92	7	57	81	0	0	18	0.70
92245459--92245489	9	3.3	9	95	4	53	80	0	0	19	0.71
92261553--92261619	16	4.2	16	86	0	89	43	4	23	28	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92264654--92264694	19	2.2	18	86	4	55	34	17	0	48	1.47
92267534--92267587	27	2.0	27	88	0	81	38	5	14	40	1.70
92278818--92278913	47	2.0	47	95	0	174	39	2	16	41	1.60
92293740--92293764	3	8.3	3	100	0	50	32	0	0	68	0.90
92300804--92300927	56	2.2	58	88	5	191	29	16	4	49	1.64
92309489--92309554	19	3.1	22	77	18	77	42	0	0	57	0.98
92309424--92309533	57	2.0	54	81	13	125	40	0	3	55	1.17
92309482--92309541	19	3.1	19	81	15	70	38	0	1	60	1.07
92309618--92309662	18	2.3	20	85	7	58	35	2	0	62	1.08
92309712--92309750	20	1.9	20	84	5	51	53	0	0	46	1.00
92309782--92309819	19	2.0	19	94	0	67	50	0	2	47	1.15
92309776--92309838	19	3.5	18	81	10	58	52	1	3	42	1.27
92309828--92309882	20	2.8	20	75	10	67	65	0	0	34	0.93
92312610--92312711	30	3.4	30	87	0	132	24	25	22	27	2.00
92316016--92316053	8	4.9	8	90	6	60	52	0	0	47	1.00
92316093--92316124	15	2.1	15	100	0	64	68	0	0	31	0.90
92316311--92316375	21	3.2	20	74	22	55	55	0	0	44	0.99
92316316--92316380	20	3.1	22	77	16	75	58	1	0	40	1.07
92316319--92316361	21	2.2	20	91	8	70	60	0	0	39	0.97
92316320--92316401	42	2.0	42	82	4	103	58	1	0	40	1.06
92316477--92316543	23	2.8	24	82	8	75	76	4	7	11	1.15
92324382--92324414	16	2.1	16	88	11	50	54	3	6	36	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92325284--92325322	19	2.2	17	86	9	51	35	5	0	58	1.20
92340895--92341015	42	2.8	44	71	15	119	31	25	18	24	1.97
92344998--92345057	30	2.0	30	87	6	86	38	8	25	28	1.84
92345483--92345655	47	3.7	47	76	13	178	22	17	28	31	1.97
92349346--92349395	10	5.0	10	86	13	68	70	2	8	20	1.23
92351048--92351099	21	2.5	21	90	0	77	67	1	3	26	1.18
92360396--92360455	10	6.0	10	86	7	77	68	1	6	23	1.22
92361110--92361293	96	1.9	97	86	3	264	29	25	15	29	1.96
92362340--92362383	12	3.6	12	77	17	54	72	0	4	22	1.02
92362356--92362433	5	15.4	5	73	17	54	78	1	3	16	0.97
92362340--92362426	22	3.7	23	80	13	90	75	1	4	18	1.03
92362349--92362433	29	2.8	29	78	5	98	77	1	3	17	0.97
92366071--92366183	42	2.7	42	82	5	129	41	16	23	17	1.89
92366156--92366195	21	1.9	21	84	0	53	42	12	15	30	1.83
92369581--92369688	30	3.5	30	76	8	101	47	4	10	37	1.58
92371954--92371999	2	23.0	2	100	0	92	50	50	0	0	1.00
92373575--92373603	1	29.0	1	100	0	58	100	0	0	0	0.00
92395696--92395821	30	4.2	30	82	5	130	36	18	12	32	1.88
92408730--92408762	2	16.5	2	93	0	57	0	54	0	45	0.99
92411343--92411371	12	2.3	13	94	5	51	68	0	0	31	0.89
92411927--92411963	13	2.8	13	87	4	56	67	0	2	29	1.04
92413009--92413118	26	4.2	26	94	2	177	34	4	24	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92414735--92414849	27	4.3	26	80	7	122	18	24	21	35	1.95
92414735--92414849	54	2.1	54	83	3	142	18	24	21	35	1.95
92416733--92417318	206	2.8	205	89	2	854	29	21	17	31	1.97
92427229--92427276	15	3.3	15	81	16	57	39	10	25	25	1.87
92430755--92430787	2	16.5	2	93	0	57	0	54	0	45	0.99
92433362--92433422	13	4.6	12	73	18	50	59	4	3	32	1.35
92433951--92433986	13	2.8	13	91	0	63	66	0	2	30	1.06
92433949--92434039	32	2.8	33	71	15	84	63	0	4	31	1.14
92433914--92434039	13	9.3	13	69	21	50	62	0	4	31	1.21
92440030--92440076	21	2.3	20	85	3	58	12	34	27	25	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345