genome.fa.s12.2.7.7.80.10.50.1000.220.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  220  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63862470--63862778	96	3.2	97	94	3	552	28	8	33	29	1.87
63862880--63863000	37	3.3	37	95	2	217	25	19	33	21	1.97
63864168--63864198	16	1.9	16	100	0	62	19	16	32	32	1.94
63864828--63864912	40	2.1	40	86	0	116	28	21	27	23	1.99
63865109--63865329	29	7.7	29	97	1	408	26	15	32	24	1.96
63867938--63868034	28	3.4	28	85	4	104	27	12	27	31	1.93
63867963--63868034	29	2.5	29	91	6	112	29	13	27	29	1.95
63870906--63871242	47	7.3	47	90	2	522	34	8	29	27	1.87
63870906--63871242	140	2.4	140	88	2	520	34	8	29	27	1.87
63870906--63871240	93	3.6	93	89	2	523	34	8	29	27	1.87
63873802--63874118	40	7.9	40	89	0	463	24	23	27	24	2.00
63877400--63877645	47	5.3	47	94	1	399	32	10	30	26	1.90
63877400--63877645	93	2.6	94	92	1	399	32	10	30	26	1.90
63877577--63877719	74	1.9	74	95	0	259	32	9	31	26	1.88
63877651--63877952	47	6.5	47	94	1	457	33	8	31	26	1.87
63881652--63882017	47	7.8	47	75	10	286	24	30	19	26	1.98
63881700--63882059	142	2.5	140	83	4	436	24	28	19	27	1.98
63881696--63882019	95	3.4	96	81	7	342	24	30	18	26	1.98
63885455--63885483	5	6.0	5	92	8	51	20	0	0	79	0.74
63885454--63885483	14	2.1	14	100	0	60	23	0	0	76	0.78
63888727--63888771	21	2.1	21	87	0	63	20	37	13	28	1.90
63892057--63892213	43	3.7	43	77	9	142	26	18	24	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63894586--63894617	17	1.9	16	93	6	55	25	37	18	18	1.94
63898406--63898811	41	9.9	41	78	4	383	19	17	24	38	1.92
63898700--63898913	105	2.0	107	87	5	310	18	15	26	39	1.91
63898800--63899066	41	6.5	41	78	1	266	19	16	25	38	1.92
63898573--63899011	228	1.9	228	84	2	578	19	16	25	38	1.92
63898654--63898934	146	1.9	146	83	4	361	18	16	27	38	1.91
63898800--63899066	82	3.3	82	81	0	309	19	16	25	38	1.92
63898613--63898962	187	1.9	187	86	2	497	18	16	26	38	1.92
63898800--63899072	123	2.2	123	83	5	329	20	15	25	38	1.92
63900567--63900660	47	2.0	47	97	0	179	32	8	15	42	1.78
63903961--63903993	3	11.0	3	100	0	66	0	33	0	66	0.92
63912872--63912899	13	2.2	13	100	0	56	28	7	25	39	1.82
63917849--63917874	3	8.7	3	100	0	52	30	0	0	69	0.89
63921903--63921940	2	19.5	2	83	5	51	50	5	0	44	1.24
63922003--63922040	3	13.0	3	88	5	60	65	0	2	31	1.06
63923787--63924053	51	5.4	51	68	14	184	28	22	17	32	1.96
63923835--63924101	46	5.6	46	67	15	159	26	22	18	31	1.97
63923796--63924101	97	3.2	97	86	1	409	28	22	18	31	1.97
63924035--63924583	143	3.8	143	87	0	767	27	20	20	31	1.98
63930544--63930633	3	29.7	3	86	6	128	64	2	1	32	1.13
63934851--63934876	2	13.0	2	100	0	52	50	0	0	50	1.00
63935644--63935776	40	3.3	40	91	2	205	24	19	27	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63935593--63935776	80	2.3	81	83	5	232	24	19	27	28	1.99
63935644--63935799	80	2.0	79	84	6	208	25	19	26	28	1.99
63935591--63935776	40	4.6	41	84	6	195	24	19	27	28	1.99
63948089--63948216	48	2.7	48	88	2	186	36	8	25	29	1.86
63948098--63948247	48	3.1	47	82	8	169	34	9	28	28	1.88
63952020--63952171	67	2.3	66	80	9	173	32	16	29	21	1.95
63959793--63960126	50	6.8	50	80	8	339	28	19	27	24	1.98
63963897--63964142	55	4.6	54	77	12	233	36	17	23	21	1.94
63963905--63964105	108	1.8	110	86	4	291	35	17	24	22	1.95
63966668--63967246	180	3.2	179	88	1	838	29	24	16	30	1.97
63975710--63975746	14	2.6	15	91	8	60	45	10	18	24	1.81
63978833--63978940	26	4.2	26	91	0	171	33	8	23	35	1.85
63986882--63986952	35	2.0	35	94	0	124	18	46	9	25	1.79
63987337--63987379	12	3.6	12	93	0	77	76	6	2	13	1.08
63987462--63987496	11	3.2	11	92	8	54	0	54	0	45	0.99
63987975--63988002	3	9.3	3	100	0	56	32	0	0	67	0.91
63988104--63988151	3	16.0	3	100	0	96	33	0	0	66	0.92
63988367--63988437	31	2.3	30	80	15	83	36	5	2	54	1.38
64004665--64004693	14	2.1	14	100	0	58	13	13	6	65	1.45
64004994--64005022	14	2.1	14	100	0	58	13	13	6	65	1.45
64005009--64005982	72	12.7	73	82	11	1063	29	17	20	33	1.95
64005454--64005482	14	2.1	14	100	0	58	13	13	6	65	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64005324--64005942	163	3.9	161	89	6	871	28	17	20	33	1.95
64005617--64005645	14	2.1	14	100	0	58	13	13	6	65	1.45
64004606--64005987	623	2.2	623	96	2	2525	29	17	20	33	1.95
64006296--64006394	44	2.2	45	80	3	103	38	17	15	29	1.90
64006706--64006776	35	2.0	35	94	0	124	18	46	9	25	1.79
64007161--64007197	11	3.3	11	85	7	56	72	8	2	16	1.19
64007160--64007197	12	3.2	12	85	7	60	73	7	2	15	1.17
64007299--64007333	11	3.2	11	92	8	54	0	54	0	45	0.99
64007806--64007833	3	9.3	3	100	0	56	32	0	0	67	0.91
64007935--64007961	3	9.0	3	100	0	54	33	0	0	66	0.92
64010458--64010516	29	2.0	29	83	0	73	27	10	18	44	1.82
64034129--64034286	45	3.6	44	82	9	162	29	29	21	20	1.98
64034129--64034484	43	8.2	43	85	4	378	30	31	22	14	1.94
64039026--64039109	26	3.2	26	96	0	150	33	4	25	36	1.77
64044801--64044884	26	3.2	26	96	0	150	33	4	25	36	1.77
64048124--64048201	39	2.0	40	87	2	113	39	24	20	15	1.91
64049975--64050014	19	2.1	19	86	9	55	82	2	15	0	0.77
64051032--64051089	30	1.9	30	85	0	80	41	6	20	31	1.79
64053752--64053820	22	3.2	21	74	11	68	42	1	4	52	1.30
64064116--64064288	46	3.8	45	75	13	181	21	20	26	30	1.98
64064113--64064283	93	1.8	93	92	0	288	21	21	27	29	1.98
64065651--64065735	43	2.0	43	100	0	170	47	20	2	30	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64066295--64066386	33	2.8	33	80	8	116	32	23	10	32	1.90
64066297--64066410	33	3.5	33	79	11	110	33	23	11	31	1.90
64071057--64071127	22	3.2	22	66	15	65	39	15	11	33	1.83
64071038--64071131	44	2.2	44	98	1	181	38	13	11	36	1.82
64071220--64071307	25	3.5	25	80	9	81	30	22	23	22	1.99
64071261--64071308	25	1.9	25	95	0	87	33	22	27	16	1.96
64077201--64077433	48	4.9	48	84	2	270	28	16	26	28	1.97
64084146--64084428	96	2.9	96	88	0	395	30	18	24	26	1.98
64084164--64084426	48	5.5	47	76	4	222	30	18	25	26	1.98
64086576--64086796	40	5.6	40	91	2	331	27	23	27	21	1.99
64091878--64091983	25	4.3	25	73	7	108	37	20	21	19	1.94
64096255--64096318	29	2.2	29	100	0	128	34	3	37	25	1.72
64098987--64099013	2	13.5	2	100	0	54	48	0	0	51	1.00
64101483--64101653	93	1.8	93	94	0	306	27	28	22	21	1.99
64101478--64101650	46	3.7	46	77	13	201	28	27	21	21	1.99
64102068--64102127	30	2.0	30	90	0	93	30	25	8	36	1.85
64109035--64109205	46	3.7	45	79	12	204	28	27	21	22	1.99
64109040--64109209	92	1.8	93	94	1	306	28	28	21	21	1.99
64109628--64109687	30	2.0	30	90	0	93	30	25	8	36	1.85
64119118--64119163	18	2.6	18	96	0	83	28	26	19	26	1.99
64119608--64119666	10	5.9	10	82	7	75	20	10	1	67	1.28
64122688--64122863	46	3.8	46	81	10	232	20	21	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64122684--64122855	93	1.8	93	96	0	317	20	22	30	27	1.98
64125142--64125242	28	3.5	28	86	6	114	29	26	13	29	1.94
64133090--64133190	28	3.5	28	86	6	114	29	26	13	29	1.94
64136918--64136986	15	4.6	15	83	0	84	11	17	13	57	1.64
64136909--64136996	30	3.0	30	81	8	99	10	17	15	56	1.66
64139375--64139545	46	3.8	46	79	13	187	21	21	29	28	1.98
64139380--64139550	42	3.8	43	78	14	186	21	20	29	28	1.98
64147540--64147604	13	4.9	13	74	20	55	18	3	3	75	1.07
64147540--64147604	27	2.4	27	80	14	73	18	3	3	75	1.07
64149164--64149299	29	4.7	29	86	3	157	24	30	15	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345