Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  10  of  345  ( 41379 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3477258--3477411
53
2.9
52
82
6
184
24
27
16
31
1.97
3478945--3478995
24
2.1
24
82
7
59
50
9
0
39
1.35
3491784--3491880
33
2.8
35
72
20
89
50
1
3
45
1.24
3491819--3491899
33
2.7
30
76
16
78
50
1
1
46
1.17
3500763--3500804
22
1.9
22
100
0
84
45
23
14
16
1.84
3518738--3518796
26
2.4
24
83
10
75
67
3
0
28
1.06
3518767--3518825
21
2.8
22
85
7
70
71
6
0
22
1.09
3518872--3518904
15
2.1
16
88
11
50
69
0
0
30
0.88
3520746--3520770
12
2.1
12
100
0
50
16
8
0
76
1.02
3520868--3520906
21
1.9
21
84
5
53
56
5
5
33
1.43
3522700--3522729
14
2.1
14
100
0
60
40
6
6
46
1.56
3522871--3522961
35
2.6
35
86
6
123
31
12
24
31
1.92
3530287--3530377
35
2.6
34
86
6
121
31
10
24
32
1.90
3531838--3531876
18
2.1
19
90
4
62
48
10
0
41
1.37
3533196--3533248
5
10.0
5
80
11
61
56
1
0
41
1.10
3533195--3533250
12
4.5
12
81
16
69
55
1
0
42
1.10
3542266--3542331
33
1.9
35
87
6
100
25
10
18
45
1.81
3545869--3545894
3
8.7
3
100
0
52
0
34
0
65
0.93
3546322--3546359
13
2.9
13
84
11
51
34
0
2
63
1.09
3548918--3548957
21
1.9
21
85
10
55
42
10
12
35
1.76
3550296--3550347
11
4.7
11
74
9
52
34
0
7
57
1.27
3550304--3550361
22
2.5
22
83
5
71
39
0
6
53
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3550284--3550363
33
2.5
31
84
13
108
38
0
5
56
1.21
3550795--3550846
11
4.7
11
74
9
52
57
7
0
34
1.27
3555441--3555466
3
8.7
3
100
0
52
69
0
0
30
0.89
3556400--3556456
26
2.3
24
76
8
62
29
3
1
64
1.20
3558132--3558170
16
2.4
17
83
12
55
56
0
0
43
0.99
3558132--3558170
11
3.7
10
80
12
51
56
0
0
43
0.99
3566774--3566923
67
2.3
63
83
6
187
47
14
11
27
1.78
3570323--3570348
2
13.0
2
100
0
52
50
0
0
50
1.00
3578556--3578610
25
2.2
25
93
0
92
43
14
7
34
1.73
3578562--3578612
25
2.0
25
100
0
102
43
15
3
37
1.66
3578745--3578777
17
2.0
17
94
5
59
39
0
0
60
0.97
3578728--3578777
17
2.9
17
81
0
55
40
0
0
60
0.97
3578740--3578792
27
2.0
27
88
7
81
43
1
0
54
1.11
3579294--3579319
12
2.2
12
100
0
52
7
15
30
46
1.74
3579344--3579633
41
7.1
42
84
7
348
38
24
20
16
1.92
3579790--3579843
7
7.7
7
80
0
54
25
0
24
50
1.50
3579809--3579944
46
3.0
46
95
0
245
30
2
23
43
1.66
3579830--3579914
25
3.6
25
68
12
79
31
2
21
44
1.65
3579967--3580010
14
3.1
14
80
3
52
18
0
36
45
1.49
3580050--3580099
7
7.1
7
86
8
50
20
0
32
48
1.50
3579973--3580097
14
8.9
14
72
10
69
20
0
37
41
1.53
3579988--3580097
21
5.2
21
72
15
77
20
0
38
41
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3580370--3580414
14
3.2
14
81
12
65
24
0
26
48
1.51
3580424--3580482
29
2.0
29
100
0
118
35
10
13
40
1.78
3585080--3585147
24
2.8
24
88
0
100
27
17
7
47
1.74
3585468--3585588
9
13.6
9
79
1
118
47
14
1
35
1.55
3585468--3585588
18
6.8
18
83
1
145
47
14
1
35
1.55
3585464--3585588
27
4.6
27
84
2
135
48
14
1
36
1.54
3591393--3591459
31
2.2
31
83
0
80
17
4
17
59
1.53
3591533--3591696
43
3.8
43
96
0
292
20
32
21
25
1.97
3598316--3598366
26
2.0
26
84
3
68
64
3
0
31
1.11
3598328--3598376
26
2.0
24
88
8
71
63
6
0
30
1.19
3598355--3598400
19
2.3
21
88
7
69
71
4
0
23
1.03
3600051--3600083
16
2.0
17
88
5
50
21
45
6
27
1.75
3600964--3601007
15
2.9
15
86
10
54
63
0
0
36
0.95
3600963--3601000
16
2.3
17
82
17
53
63
0
0
36
0.95
3602973--3603002
14
2.1
14
100
0
60
26
6
43
23
1.78
3603488--3603522
14
2.5
15
86
13
56
40
0
0
60
0.97
3604499--3604536
18
1.9
19
85
15
51
21
10
2
65
1.35
3604995--3605034
2
20.0
2
100
0
80
50
0
0
50
1.00
3613186--3613233
12
3.9
12
78
5
60
62
16
4
16
1.48
3621041--3621103
30
2.1
30
82
5
74
61
1
1
34
1.15
3626568--3626607
19
2.1
19
100
0
80
52
15
0
32
1.43
3629660--3629692
17
2.0
17
94
5
59
36
15
0
48
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3629978--3630297
46
7.0
46
90
0
399
22
24
13
39
1.90
3633098--3633248
53
2.8
53
89
4
214
29
27
16
25
1.97
3635301--3635331
16
1.9
16
93
0
53
35
22
0
41
1.54
3635298--3635337
20
2.0
20
85
0
53
37
22
0
40
1.54
3635523--3635663
49
2.9
49
94
0
237
19
24
18
37
1.94
3635526--3635826
49
5.8
52
80
8
165
20
23
18
36
1.95
3637531--3637624
7
13.1
7
75
16
59
50
1
1
47
1.15
3638751--3638807
22
2.6
22
83
8
80
14
24
19
42
1.88
3642207--3642293
21
4.0
23
80
10
92
37
25
21
14
1.92
3642707--3642744
15
2.4
17
83
16
55
0
28
0
71
0.87
3647707--3647835
46
2.8
46
95
0
222
19
21
29
29
1.98
3655225--3655400
46
3.8
46
79
12
216
20
21
29
28
1.98
3655222--3655393
93
1.8
93
96
0
317
20
21
29
27
1.98
3659374--3659481
21
5.0
22
83
5
123
37
25
22
15
1.93
3659374--3659482
42
2.5
42
86
2
155
36
24
22
16
1.94
3659895--3659932
15
2.4
17
83
16
55
0
28
0
71
0.87
3661835--3661878
8
5.4
8
78
5
52
36
0
0
63
0.95
3662067--3662110
22
2.0
21
86
4
61
61
0
2
36
1.09
3665016--3665042
14
1.9
14
100
0
54
88
7
3
0
0.61
3665430--3665493
33
1.9
33
93
0
110
23
14
28
34
1.93
3666130--3666186
22
2.5
24
80
8
73
36
0
0
63
0.95
3674108--3674292
100
1.9
100
87
4
275
52
8
4
34
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3675821--3675865
19
2.2
21
88
7
67
31
0
0
68
0.89
3676149--3676178
15
2.0
15
93
0
51
43
0
0
56
0.99
3687236--3687299
22
2.9
22
77
13
60
62
4
0
32
1.16
3687273--3687304
16
2.1
16
94
5
57
56
6
0
37
1.25
3687362--3687804
113
3.9
113
90
3
676
51
16
1
30
1.53
3687362--3687799
227
1.9
227
90
5
697
51
16
1
30
1.53
3687899--3687943
20
2.3
20
81
11
58
68
6
0
24
1.13
3688077--3688107
16
1.9
16
93
0
53
0
38
0
61
0.96
3688075--3688113
19
2.2
18
82
13
53
0
35
0
64
0.94
3691674--3691713
20
2.0
20
85
9
55
55
2
0
42
1.13
3698061--3698113
23
2.2
25
83
6
65
69
3
1
24
1.15
3708904--3708975
4
17.5
4
74
5
54
62
4
27
5
1.36
3713843--3713897
27
2.0
27
83
13
69
43
10
20
25
1.84
3716304--3716356
23
2.3
23
73
23
58
41
3
0
54
1.18
3728600--3728638
21
2.0
20
90
10
62
64
0
7
28
1.21
3738664--3738714
22
2.3
21
81
15
59
39
7
15
37
1.77
3738664--3738705
22
2.0
22
86
13
61
40
9
11
38
1.75
3739340--3739383
22
2.0
22
100
0
88
18
27
9
45
1.79
3742156--3742197
20
2.0
21
86
13
61
50
0
11
38
1.40
3749189--3749240
23
2.2
25
86
6
72
40
0
3
55
1.18
3754063--3754096
17
2.0
17
94
0
59
50
0
0
50
1.00
3754451--3754475
13
1.9
13
100
0
50
32
16
12
40
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3757845--3757905
31
1.9
32
86
6
88
19
9
6
63
1.46
3764207--3764254
22
2.2
21
85
10
62
60
4
2
33
1.27
3768054--3768107
12
4.5
12
74
6
56
9
25
14
50
1.73
3771630--3771754
62
2.0
62
98
0
241
52
8
16
22
1.71
3772354--3772549
96
2.0
96
83
6
245
39
1
16
42
1.57
3772639--3773176
126
4.3
126
89
1
785
34
17
21
27
1.95
3777569--3777734
46
3.9
41
80
12
158
36
15
25
22
1.93
3777611--3777778
46
3.6
47
84
3
207
40
14
24
20
1.90
3778787--3779201
46
9.0
46
92
0
542
21
24
14
39
1.91
3781358--3781394
20
1.9
20
88
5
58
51
8
0
40
1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345