genome.fa.s12.2.7.7.80.10.50.1000.295.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  295  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88665377--88665415	11	3.7	11	80	13	55	33	20	10	35	1.86
88665372--88665417	20	2.3	20	100	0	92	34	21	8	34	1.84
88669888--88669926	18	2.2	18	95	0	69	30	2	28	38	1.70
88680714--88680848	49	2.8	47	84	5	180	26	16	31	25	1.96
88682124--88682165	22	2.0	22	95	4	77	9	45	28	16	1.79
88690464--88690849	48	8.0	48	78	6	341	27	20	26	25	1.99
88690466--88690843	144	2.6	145	84	4	460	26	20	26	25	1.99
88695468--88695527	20	2.7	23	67	27	58	46	1	5	46	1.34
88697875--88698061	71	2.7	68	93	5	281	18	28	18	34	1.95
88697898--88698061	71	2.3	71	100	0	328	18	28	17	35	1.94
88697898--88698095	71	2.8	70	92	3	276	20	28	17	33	1.95
88699641--88699695	18	3.1	18	97	0	101	32	23	29	14	1.94
88704091--88704220	64	2.0	64	96	0	242	31	14	19	34	1.92
88705685--88705725	16	2.6	16	88	7	57	17	26	4	51	1.65
88705694--88705739	16	2.8	16	86	3	56	17	23	2	56	1.52
88705963--88706001	17	2.3	17	100	0	78	41	17	0	41	1.50
88715852--88715878	7	3.9	7	100	0	54	29	40	0	29	1.57
88716194--88716224	15	2.1	15	93	0	53	0	16	35	48	1.46
88716274--88716302	3	9.7	3	100	0	58	0	31	34	34	1.58
88716616--88716710	30	3.2	30	70	7	95	27	21	3	48	1.65
88716783--88716817	19	1.9	17	88	11	52	48	17	0	34	1.47
88716844--88716904	18	3.4	18	77	8	63	60	3	0	36	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88717823--88717905	43	1.9	43	92	0	139	49	14	7	28	1.70
88717821--88717913	43	2.2	43	86	3	134	51	12	7	27	1.67
88717935--88717974	19	2.2	18	86	13	55	42	15	2	40	1.60
88726166--88726336	46	3.7	46	78	11	190	22	19	27	29	1.98
88726561--88726598	19	2.0	20	85	15	53	36	0	23	39	1.55
88729597--88729731	43	3.2	43	93	4	229	51	14	5	28	1.66
88729753--88729792	19	2.2	18	86	13	55	42	15	2	40	1.60
88736809--88736838	15	2.0	15	100	0	60	40	13	13	33	1.83
88747064--88747111	17	2.8	17	84	12	71	68	2	0	29	1.01
88747065--88747107	8	5.1	8	83	10	59	69	2	0	27	1.00
88749673--88749738	33	2.0	33	96	0	123	34	3	19	42	1.67
88770747--88770772	7	3.7	7	100	0	52	26	0	42	30	1.56
88770746--88770780	14	2.4	14	85	4	52	25	0	40	34	1.56
88771400--88771515	7	15.2	8	86	10	108	66	1	0	31	1.08
88771425--88771522	7	13.7	7	92	4	142	69	1	1	28	1.02
88773820--88774890	23	46.8	23	74	10	694	32	6	23	37	1.80
88773813--88775043	46	27.1	46	76	7	979	32	6	23	37	1.80
88773969--88774637	183	3.7	182	85	4	766	32	6	23	37	1.80
88773813--88774890	229	4.7	230	88	4	1064	32	6	23	37	1.80
88774947--88775043	23	4.2	23	89	1	149	34	7	22	36	1.82
88774854--88775011	83	1.9	84	81	11	191	29	6	25	37	1.82
88774641--88775042	160	2.6	152	90	3	527	31	6	23	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88775333--88775382	21	2.4	21	100	0	100	40	18	34	8	1.79
88777408--88777509	28	3.5	29	81	6	109	28	27	14	29	1.95
88779875--88779935	31	2.0	31	83	6	79	47	6	6	39	1.55
88782425--88782494	27	2.6	27	95	2	122	30	27	14	28	1.95
88793102--88793251	40	3.8	40	74	14	123	26	24	26	22	2.00
88793151--88793267	39	3.0	38	78	6	117	25	24	27	22	2.00
88798795--88799195	54	7.6	54	76	10	362	23	23	16	36	1.94
88798795--88799084	108	2.7	108	92	1	465	22	24	17	35	1.95
88798779--88799094	161	2.0	161	81	6	381	22	24	17	36	1.95
88798911--88799247	101	3.3	100	82	7	329	24	23	16	35	1.94
88802044--88802080	3	12.7	3	94	5	67	29	0	0	70	0.88
88804975--88805041	25	2.7	25	90	0	107	49	10	17	22	1.77
88805022--88805051	12	2.5	12	94	0	51	53	10	13	23	1.69
88805170--88805229	27	2.3	26	82	2	66	38	20	18	23	1.93
88805224--88805269	2	23.0	2	100	0	92	50	0	0	50	1.00
88805264--88805439	67	2.6	67	92	0	289	31	20	28	19	1.97
88805656--88805903	27	9.2	27	85	0	280	38	6	24	31	1.80
88805656--88805903	81	3.1	81	85	0	316	38	6	24	31	1.80
88808875--88809027	40	3.8	40	80	8	152	29	21	25	23	1.99
88808917--88809027	39	2.8	39	85	8	143	27	21	27	22	1.99
88810533--88810849	27	11.7	27	88	2	424	27	23	9	39	1.85
88810747--88811051	27	11.2	27	77	9	111	36	20	8	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88810828--88810967	54	2.6	54	84	4	183	39	21	7	31	1.82
88810558--88810886	81	4.1	81	83	4	198	29	23	8	38	1.84
88810828--88811079	81	3.1	79	74	11	222	38	20	8	32	1.83
88810801--88811079	54	5.1	52	73	11	177	37	20	8	33	1.84
88810841--88811058	27	8.0	27	74	10	149	39	18	9	32	1.82
88811098--88811171	27	2.7	27	76	12	71	37	20	18	22	1.94
88812334--88812381	25	2.0	24	83	4	60	31	25	18	25	1.98
88812420--88812476	9	5.9	9	73	15	51	35	8	21	35	1.84
88812418--88812488	20	3.5	20	94	0	124	35	11	21	32	1.89
88812429--88812483	11	5.4	11	70	16	55	36	12	20	30	1.90
88812535--88812745	23	9.0	24	91	5	335	27	20	22	29	1.99
88812535--88812745	47	4.5	47	93	4	347	27	20	22	29	1.99
88812535--88812724	70	2.7	71	93	4	325	27	20	21	30	1.98
88812938--88813001	31	2.1	31	90	0	101	35	15	23	25	1.94
88814369--88814430	30	2.1	30	100	0	124	27	37	3	32	1.73
88815383--88815500	6	19.3	6	66	16	55	49	13	17	19	1.80
88815406--88815473	25	2.7	25	86	0	100	48	13	19	19	1.81
88815675--88815706	2	16.0	2	93	0	55	46	0	3	50	1.17
88815701--88815875	67	2.6	67	91	0	280	29	21	29	20	1.98
88816092--88816312	81	2.7	81	86	0	289	42	7	21	29	1.79
88816092--88816312	27	8.2	27	86	5	241	42	7	21	29	1.79
88816111--88816339	81	2.8	81	84	2	264	40	8	21	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88816092--88816339	54	4.6	52	80	8	221	40	7	21	30	1.81
88822704--88822828	6	20.3	6	70	16	87	48	13	19	19	1.81
88822730--88822800	25	2.8	25	93	0	124	45	14	22	18	1.85
88822725--88822828	31	3.6	30	79	15	128	47	13	20	19	1.82
88822730--88822825	25	3.8	25	83	6	106	45	14	20	18	1.85
88822947--88823006	27	2.3	26	82	2	66	35	20	21	23	1.96
88823007--88823182	67	2.6	67	94	0	325	30	22	28	18	1.97
88823112--88823163	27	2.0	26	88	3	77	36	21	25	17	1.94
88823399--88823619	27	8.2	27	84	0	262	41	7	21	29	1.81
88823399--88823619	54	4.1	54	88	1	309	41	7	21	29	1.81
88823399--88823646	54	4.6	54	86	0	298	39	7	22	30	1.82
88829052--88829082	14	2.2	14	94	0	53	32	0	6	61	1.21
88834287--88834408	43	2.9	43	87	1	174	26	22	28	22	1.99
88839204--88839490	131	2.2	131	84	4	373	31	19	16	33	1.94
88842904--88843259	49	7.3	49	94	0	567	31	8	30	30	1.86
88847598--88847626	12	2.4	12	100	0	58	55	17	17	10	1.69
88856263--88856566	40	7.7	40	87	2	321	26	21	26	25	1.99
88856331--88856599	79	3.4	79	81	6	235	27	20	26	25	1.99
88859098--88859475	44	8.6	44	89	0	531	28	14	29	27	1.95
88862133--88862506	131	2.9	130	81	5	416	28	18	17	35	1.94
88867643--88867814	46	3.7	46	78	10	206	28	27	21	22	1.99
88867648--88867818	93	1.8	93	94	0	306	28	28	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88873435--88873596	71	2.3	69	97	2	306	18	27	17	35	1.94
88875716--88875879	71	2.3	71	100	0	328	18	28	17	35	1.94
88875716--88875913	71	2.8	70	91	3	258	20	28	17	33	1.95
88883284--88883447	71	2.3	71	100	0	328	18	28	17	35	1.94
88883284--88883481	71	2.8	70	91	3	258	20	28	17	33	1.95
88890853--88891016	71	2.3	71	100	0	328	18	28	17	35	1.94
88890853--88891050	71	2.8	70	91	3	258	20	28	17	33	1.95
88895401--88895571	93	1.8	93	94	0	306	28	28	21	21	1.98
88895396--88895568	46	3.7	46	77	13	201	29	27	20	21	1.98
88897095--88897216	46	2.6	47	87	10	180	27	20	29	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345