genome.fa.s12.2.7.7.80.10.50.1000.267.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  267  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79337907--79337935	14	2.0	15	93	6	51	51	20	0	27	1.47
79340526--79340585	30	2.0	30	87	3	86	30	23	6	40	1.80
79346529--79346557	14	2.0	15	93	6	51	51	20	0	27	1.47
79355999--79356240	57	4.2	57	90	2	353	28	33	18	19	1.95
79356054--79356212	29	5.6	29	72	3	142	28	35	18	17	1.94
79356029--79356238	28	7.5	28	69	4	145	29	32	19	18	1.96
79358084--79358143	28	2.2	26	77	11	66	26	26	11	35	1.91
79358098--79358169	28	2.6	28	88	0	99	29	27	12	30	1.93
79362545--79362694	67	2.2	67	81	8	171	32	17	28	21	1.96
79362569--79362752	67	2.8	64	77	8	194	29	17	29	22	1.97
79366993--79367142	67	2.2	67	81	8	171	32	17	28	21	1.96
79367017--79367200	67	2.8	64	77	8	194	29	17	29	22	1.97
79371441--79371590	67	2.2	67	81	8	171	32	17	28	21	1.96
79371465--79371648	67	2.8	64	77	8	194	29	17	29	22	1.97
79382128--79382158	14	2.2	14	94	0	53	22	9	32	35	1.87
79407554--79407582	14	2.0	15	93	6	51	55	20	0	24	1.44
79408411--79408448	15	2.5	16	83	12	53	52	10	0	36	1.36
79415016--79415066	16	3.2	16	88	0	66	37	3	31	27	1.75
79415055--79415143	44	2.0	46	86	8	130	31	3	25	39	1.72
79415496--79415684	94	2.0	94	96	0	351	31	15	7	46	1.73
79417267--79417302	17	2.1	17	100	0	72	50	11	11	27	1.72
79420009--79420121	40	2.8	40	93	0	190	16	29	17	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79423981--79424062	40	2.0	40	100	0	164	29	10	12	47	1.75
79425687--79425741	13	3.9	13	75	25	58	41	0	1	56	1.10
79425686--79425744	30	2.0	30	93	6	102	44	0	1	54	1.10
79426347--79426378	14	2.3	14	100	0	64	62	0	0	37	0.95
79427213--79427260	15	2.8	17	74	20	55	41	0	2	56	1.11
79431335--79431367	13	2.3	15	90	10	52	57	12	0	30	1.35
79431577--79431606	14	2.1	14	100	0	60	50	13	0	36	1.42
79442335--79442377	21	2.2	20	91	8	70	65	4	13	16	1.43
79442825--79442854	16	1.9	16	93	6	53	30	0	20	50	1.49
79445400--79445446	20	2.3	20	85	0	58	48	2	14	34	1.56
79446824--79447113	145	2.0	145	97	0	553	28	8	23	39	1.84
79452276--79452316	21	2.0	21	85	0	55	39	21	0	39	1.54
79454217--79454286	25	2.7	26	72	14	65	25	14	27	32	1.94
79454171--79454465	50	5.9	50	77	3	279	26	15	26	31	1.96
79454226--79454465	101	2.4	100	82	2	279	26	16	26	30	1.96
79454175--79454469	150	1.9	152	85	3	380	25	15	26	32	1.95
79460712--79460755	19	2.4	19	85	7	56	50	0	9	40	1.34
79462249--79462292	19	2.4	19	85	7	56	50	0	9	40	1.34
79463279--79463326	8	6.0	8	100	0	96	50	25	25	0	1.50
79463936--79463981	20	2.3	20	82	14	60	26	15	28	30	1.96
79464070--79464122	28	1.9	28	84	3	72	28	18	26	26	1.98
79476770--79476956	40	4.7	40	87	2	279	26	21	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79481907--79482073	40	4.2	40	79	6	169	26	22	26	24	2.00
79489122--79489263	40	3.5	40	83	1	124	27	23	26	22	1.99
79489161--79489289	40	3.2	39	84	6	152	24	22	27	25	2.00
79505054--79505130	38	2.0	38	100	0	154	29	7	28	33	1.85
79507254--79507414	27	6.0	27	85	0	214	32	6	19	40	1.78
79507254--79507409	54	2.9	54	90	0	240	32	7	19	41	1.79
79507254--79507414	81	2.0	81	88	0	241	32	6	19	40	1.78
79507401--79507650	27	9.3	27	85	0	311	39	8	23	28	1.84
79507265--79507450	81	2.3	81	79	1	203	33	6	20	38	1.80
79507401--79507650	54	4.6	54	91	0	392	39	8	23	28	1.84
79507400--79507650	81	3.1	81	84	6	355	39	8	23	28	1.84
79520499--79520527	2	14.5	2	100	0	58	51	0	0	48	1.00
79527652--79527738	40	2.2	39	85	2	120	25	14	28	31	1.95
79532586--79532616	14	2.2	14	94	0	53	19	6	12	61	1.53
79533075--79533126	9	5.3	9	76	15	50	69	1	0	28	0.99
79533732--79533764	16	2.0	17	88	5	50	21	3	12	63	1.41
79537357--79537483	35	3.6	35	82	1	155	43	33	8	14	1.77
79539999--79540036	20	1.9	20	84	10	51	21	10	23	44	1.83
79544345--79544418	29	2.6	28	87	8	96	25	31	16	27	1.96
79552229--79552307	29	2.7	29	86	5	106	27	32	15	24	1.95
79553488--79553517	12	2.6	12	94	5	53	23	16	0	60	1.36
79557609--79557660	27	2.0	26	84	3	68	34	21	26	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79560407--79560558	43	3.6	43	82	1	180	32	30	15	20	1.94
79566831--79566933	25	4.2	25	67	24	67	34	20	24	20	1.96
79568319--79568375	30	1.9	30	85	3	80	33	14	22	29	1.93
79568727--79568934	46	4.5	44	74	13	116	29	19	27	23	1.98
79572061--79572091	6	5.2	6	92	0	53	16	3	0	80	0.83
79574497--79574654	43	3.7	43	70	13	128	26	17	24	31	1.97
79582121--79582166	22	2.1	22	95	0	83	26	30	17	26	1.97
79582144--79582320	48	3.7	48	79	3	203	21	28	20	29	1.98
79582142--79582322	96	1.9	96	88	2	274	22	27	20	29	1.99
79582142--79582344	96	2.1	96	84	1	246	23	28	19	28	1.98
79585326--79585482	43	3.7	42	77	7	138	26	16	24	32	1.96
79587963--79587988	5	5.2	5	100	0	52	19	0	0	80	0.71
79600035--79600066	16	1.9	17	93	6	57	56	3	9	31	1.47
79600813--79600864	25	2.1	24	82	10	61	46	0	9	44	1.36
79603289--79603370	29	2.8	29	90	0	137	37	10	23	28	1.88
79605177--79605286	43	2.6	43	82	8	118	25	28	20	26	1.99
79605210--79605318	43	2.5	43	83	7	123	28	28	17	25	1.97
79607894--79607947	27	2.0	27	85	3	74	35	20	22	22	1.96
79607983--79608022	21	1.9	21	89	0	62	27	22	17	32	1.96
79607951--79608059	27	4.3	27	75	14	106	27	22	16	33	1.95
79607962--79608059	27	3.9	27	75	16	111	27	20	18	33	1.96
79607956--79608048	48	2.0	48	91	2	152	25	23	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79613964--79614184	46	4.8	46	83	9	279	28	28	21	20	1.98
79616353--79616386	16	2.1	16	94	0	59	41	17	2	38	1.65
79617412--79617489	40	1.9	41	81	2	95	28	28	17	25	1.98
79617480--79617590	43	2.6	43	88	4	163	23	30	18	27	1.97
79624429--79624653	40	5.7	40	83	5	174	26	25	21	26	2.00
79624429--79624649	79	2.8	78	80	7	257	26	25	21	26	1.99
79634143--79634242	40	2.5	40	78	3	103	27	29	22	22	1.99
79638160--79638237	29	2.7	29	83	0	102	26	17	33	21	1.96
79645987--79646088	29	3.5	29	90	0	150	27	15	33	23	1.95
79659628--79659745	43	2.8	42	82	7	141	32	26	18	22	1.97
79661415--79661484	27	2.5	28	95	2	124	28	14	27	30	1.95
79661415--79661496	27	3.0	27	85	8	78	29	15	24	30	1.96
79669235--79669267	15	2.2	15	94	0	57	54	0	33	12	1.37
79669267--79669305	4	9.8	4	100	0	78	25	0	25	48	1.51
79670310--79670334	8	3.1	8	100	0	50	24	24	0	52	1.48
79680043--79680171	49	2.6	49	88	3	188	24	27	17	31	1.97
79680187--79680309	46	2.7	46	83	3	149	21	26	18	32	1.97
79682425--79682470	22	2.0	24	84	12	62	41	15	10	32	1.82
79689676--79689731	29	1.9	29	92	0	94	57	16	14	12	1.66
79689675--79689728	14	3.8	14	75	4	54	59	16	12	11	1.61
79692621--79692734	46	2.6	42	81	10	147	31	28	17	21	1.96
79696911--79696958	20	2.3	21	92	3	80	45	0	4	50	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79699670--79699767	35	2.8	35	76	6	108	42	30	11	15	1.82
79703800--79703832	16	2.1	16	100	0	66	33	0	6	60	1.21
79708566--79708686	41	2.9	42	78	10	140	31	27	16	24	1.96
79708529--79708695	43	4.0	43	77	8	155	30	27	16	25	1.96
79720037--79720196	39	4.1	39	92	0	257	25	30	23	20	1.98
79723333--79723357	13	1.9	13	100	0	50	32	16	16	36	1.90
79724861--79725370	48	10.6	48	97	0	966	33	8	27	31	1.86
79725415--79725499	36	2.3	37	93	4	154	25	18	31	23	1.97
79727420--79727680	40	6.6	40	85	5	271	24	20	29	25	1.99
79729822--79729846	13	1.9	13	100	0	50	32	16	16	36	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345