genome.fa.s12.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  172  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48411800--48411987	27	7.0	27	85	0	223	37	19	18	25	1.94
48411792--48411985	81	2.4	81	87	1	264	38	18	17	25	1.93
48412186--48412237	27	2.0	27	92	3	88	21	23	21	34	1.97
48412355--48412413	22	2.7	22	81	0	64	20	25	22	32	1.98
48412580--48412651	27	2.7	27	82	6	76	19	25	19	36	1.95
48412794--48412943	6	24.8	6	74	16	114	20	16	13	50	1.78
48412803--48412943	24	5.6	24	78	11	129	20	15	13	50	1.78
48412827--48412943	55	2.1	54	88	1	171	18	15	14	51	1.77
48412845--48412920	31	2.5	31	89	6	111	19	17	14	48	1.81
48412769--48412943	79	2.2	79	94	0	305	20	17	13	49	1.79
48416757--48416807	23	2.3	23	86	3	68	41	13	21	23	1.89
48416789--48416839	22	2.3	22	86	0	75	35	21	17	25	1.95
48416789--48416851	22	2.9	22	83	4	65	34	20	19	25	1.96
48423062--48423101	21	1.9	21	84	0	53	22	22	30	25	1.99
48425114--48425281	25	6.8	25	91	4	229	28	22	19	29	1.98
48425340--48425396	9	5.9	9	75	15	51	35	21	8	35	1.84
48425330--48425398	20	3.5	20	93	0	111	33	18	11	36	1.87
48431638--48431702	29	2.2	29	94	0	112	30	15	27	26	1.96
48439447--48439471	13	1.9	13	100	0	50	32	16	16	36	1.90
48440974--48441482	48	10.6	48	97	0	966	33	8	27	31	1.86
48440974--48441482	239	2.1	240	98	0	984	33	8	27	31	1.86
48441527--48441652	37	3.3	37	90	6	198	25	19	29	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48441527--48441639	40	2.9	40	93	3	187	25	18	29	26	1.98
48443569--48443910	40	8.6	40	87	5	363	24	20	28	26	1.99
48443686--48443910	121	1.9	119	92	1	378	24	20	28	26	1.99
48446055--48446079	13	1.9	13	100	0	50	32	16	16	36	1.90
48447588--48448082	48	10.6	48	84	6	664	33	7	27	31	1.85
48447588--48448082	143	3.5	143	88	7	800	33	7	27	31	1.85
48447856--48447926	34	2.1	34	94	0	124	30	8	25	35	1.86
48447760--48448022	130	2.0	130	95	0	472	32	7	26	32	1.85
48447713--48448070	178	2.0	177	95	0	635	33	7	26	32	1.85
48448127--48448249	37	3.3	37	98	0	237	25	19	31	23	1.98
48455571--48455711	46	3.1	44	80	11	158	24	31	17	25	1.97
48461417--48461588	67	2.6	66	81	7	170	31	16	29	22	1.96
48461441--48461624	67	2.8	64	78	8	203	28	16	30	23	1.96
48465751--48465922	67	2.6	66	81	7	170	31	16	29	22	1.96
48465775--48465958	67	2.8	64	78	8	203	28	16	30	23	1.96
48484264--48484374	50	2.2	50	80	3	114	25	15	27	32	1.95
48484299--48484415	50	2.3	50	79	1	126	26	18	25	29	1.98
48486255--48486307	26	2.0	26	100	0	106	30	7	18	43	1.78
48493344--48493518	45	3.8	46	79	13	216	20	20	29	29	1.98
48500883--48501058	46	3.8	46	78	12	207	20	20	29	29	1.98
48500880--48501051	93	1.8	93	94	0	308	20	20	29	28	1.98
48508519--48508806	27	10.7	27	78	5	190	31	9	18	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48508531--48508813	81	3.5	81	77	6	227	31	8	18	42	1.79
48508802--48508866	27	2.4	27	94	0	121	27	21	16	33	1.95
48512310--48512388	15	5.3	15	82	7	90	10	15	13	60	1.58
48512301--48512388	30	3.0	30	80	9	101	10	14	15	59	1.61
48513137--48513177	19	2.2	19	90	0	64	51	0	9	39	1.35
48513531--48513665	39	3.5	39	93	0	225	18	23	28	28	1.98
48515490--48515745	40	6.5	40	88	5	353	23	22	28	25	1.99
48515491--48515745	79	3.2	80	85	7	342	23	21	28	25	1.99
48522895--48523152	40	6.5	40	90	2	369	23	22	28	25	2.00
48527658--48527694	19	1.9	19	88	0	56	48	0	13	37	1.43
48528047--48528213	39	4.3	39	92	0	271	19	23	27	29	1.98
48533001--48533103	29	3.6	28	81	5	116	21	16	33	29	1.95
48540945--48541136	96	2.0	96	100	0	384	22	13	22	40	1.89
48542169--48542361	39	4.9	38	88	2	242	23	20	32	23	1.98
48542186--48542362	79	2.3	78	88	3	248	23	22	32	22	1.98
48542186--48542399	79	2.7	78	82	7	220	24	21	31	22	1.98
48548719--48548879	38	4.2	39	92	3	254	23	19	32	24	1.98
48548719--48548910	38	4.9	39	89	2	244	23	21	31	23	1.98
48548736--48548948	79	2.7	77	82	7	209	24	22	30	22	1.99
48550571--48550652	29	2.8	29	81	3	85	23	15	31	29	1.95
48552622--48552744	42	2.9	42	76	10	142	25	18	26	29	1.98
48552617--48552768	43	3.6	43	75	8	157	24	19	26	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48552617--48552799	85	2.1	86	84	5	228	26	19	25	28	1.98
48556828--48556937	40	2.8	40	85	0	148	26	23	26	23	2.00
48556828--48556977	40	3.8	39	80	7	133	26	22	26	24	2.00
48566828--48566888	30	2.0	30	83	0	77	31	22	8	37	1.84
48576832--48577002	93	1.8	93	96	0	315	27	29	22	20	1.98
48576824--48577004	46	3.9	46	81	9	233	27	29	21	20	1.98
48579374--48579462	30	3.0	30	80	8	101	57	15	16	10	1.65
48579374--48579453	15	5.4	15	80	7	92	58	13	17	10	1.62
48579385--48579462	15	5.2	15	78	9	79	56	15	16	11	1.67
48582408--48582578	93	1.8	93	96	0	315	27	29	22	20	1.98
48582400--48582580	46	3.9	46	81	9	233	27	29	21	20	1.98
48590374--48590575	24	8.0	24	75	16	185	38	15	22	22	1.92
48590370--48590587	52	4.2	52	89	3	318	37	15	24	23	1.93
48590401--48590587	28	7.2	28	75	17	206	36	15	24	22	1.93
48598462--48598572	43	2.6	42	81	4	134	30	16	22	30	1.96
48601721--48601791	15	4.7	15	78	5	81	11	19	12	56	1.66
48601712--48601791	30	2.6	31	81	11	94	11	18	15	55	1.69
48604177--48604350	46	3.8	46	80	12	214	21	21	29	28	1.98
48606312--48606346	13	2.7	13	95	0	61	5	20	51	22	1.68
48607269--48607293	7	3.6	7	100	0	50	16	56	0	28	1.41
48609614--48609736	46	2.7	45	83	8	151	27	19	29	23	1.98
48611074--48611183	58	1.9	58	84	0	148	27	30	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48611074--48611195	29	4.2	29	82	1	120	27	30	14	27	1.95
48612787--48612877	44	2.1	44	100	0	182	25	13	13	48	1.78
48613760--48613831	34	2.1	34	97	0	135	13	19	30	36	1.91
48617531--48617555	13	1.9	13	100	0	50	32	16	16	36	1.90
48619064--48619765	48	14.6	48	97	0	1287	33	8	26	31	1.87
48619813--48619932	37	3.2	37	95	0	213	25	18	32	24	1.97
48621853--48622193	40	8.6	40	87	5	370	24	20	28	26	1.99
48624028--48624157	40	3.3	39	76	8	136	23	27	23	24	2.00
48624044--48624195	40	3.8	40	78	6	148	22	26	23	27	1.99
48624044--48624193	80	1.9	80	83	8	198	22	26	24	27	1.99
48632034--48632163	40	3.3	39	76	8	136	23	27	23	24	2.00
48632050--48632201	40	3.8	40	78	6	148	22	26	23	27	1.99
48632050--48632199	80	1.9	80	83	8	198	22	26	24	27	1.99
48635538--48635562	13	1.9	13	100	0	50	32	16	16	36	1.90
48637071--48637578	48	10.6	48	98	0	966	33	8	27	31	1.86
48637071--48637578	239	2.1	239	98	0	973	33	8	27	31	1.86
48637623--48637745	37	3.3	37	98	0	237	25	19	31	23	1.98
48639664--48640004	40	8.6	40	86	5	352	24	20	28	26	1.99
48642148--48642172	13	1.9	13	100	0	50	32	16	16	36	1.90
48642724--48642790	29	2.4	28	85	11	86	29	25	13	31	1.94
48650788--48650888	28	3.5	29	86	6	125	29	27	13	28	1.95
48652844--48652946	29	3.6	27	78	5	89	28	32	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48654255--48654291	19	2.1	18	85	14	51	8	16	0	75	1.02
48656095--48656281	38	4.8	38	84	6	216	28	26	22	22	1.99
48656095--48656281	76	2.4	78	84	5	254	28	26	22	22	1.99
48660210--48660278	28	2.4	29	88	7	97	31	13	24	30	1.93
48661043--48661148	50	2.1	50	98	0	203	49	3	23	23	1.67
48662822--48662863	19	2.2	19	100	0	84	21	9	33	35	1.86
48664603--48664660	30	1.9	30	85	0	80	27	20	10	41	1.85
48670904--48670968	20	3.1	21	76	14	64	72	1	0	26	0.94
48670900--48670968	11	6.7	11	75	17	60	69	1	0	28	0.97
48673046--48673080	17	2.1	16	94	5	61	25	0	17	57	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345