genome.fa.s12.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  127  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34112795--34112983	80	2.4	81	77	4	186	23	24	29	22	1.99
34114705--34114744	21	2.0	21	85	5	55	17	27	42	12	1.85
34116020--34116163	48	3.1	47	73	9	123	25	25	20	29	1.99
34117939--34117973	16	2.2	16	100	0	70	25	8	28	37	1.85
34122137--34122579	50	8.8	50	75	8	362	26	17	25	30	1.97
34122184--34122365	101	1.8	101	92	2	312	28	18	23	30	1.98
34122137--34122573	151	2.9	152	87	3	625	26	17	25	30	1.97
34126316--34126444	6	20.8	6	73	15	102	50	14	15	19	1.78
34126333--34126444	31	3.6	31	96	1	197	50	16	15	18	1.79
34126581--34126654	27	2.8	27	87	2	96	36	22	22	17	1.95
34126813--34126877	22	3.0	22	80	13	80	36	23	20	20	1.95
34127305--34127444	27	5.2	27	85	5	169	26	22	18	32	1.97
34127484--34127823	27	12.6	26	80	5	329	31	9	18	40	1.83
34127484--34127823	81	4.2	81	81	3	371	31	9	18	40	1.83
34127567--34127823	27	9.5	27	86	0	352	32	8	18	40	1.81
34127567--34127823	54	4.8	54	89	0	388	32	8	18	40	1.81
34129312--34129346	2	17.5	2	100	0	70	51	0	0	48	1.00
34132441--34132823	50	7.6	50	78	7	346	25	18	26	30	1.98
34132441--34132823	101	3.8	100	80	6	364	25	18	26	30	1.98
34132487--34132830	151	2.3	151	90	2	550	25	19	26	29	1.98
34135215--34135274	30	2.0	30	100	0	120	13	10	16	60	1.59
34138379--34138501	42	2.9	42	78	7	140	30	15	24	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34138379--34138499	43	2.9	42	79	7	136	30	15	24	28	1.96
34146404--34146770	48	7.7	48	84	1	378	26	17	29	27	1.97
34146598--34146816	48	4.6	48	81	4	138	26	18	28	26	1.98
34146425--34146815	144	2.7	143	79	1	406	27	17	28	26	1.98
34148362--34149555	605	2.0	589	89	3	1834	26	16	26	30	1.97
34149890--34149915	8	3.2	8	100	0	52	38	0	38	23	1.55
34154008--34154267	40	6.6	40	91	3	402	21	22	28	27	1.99
34161038--34161217	40	4.6	40	90	4	278	24	23	26	26	2.00
34161038--34161217	79	2.3	80	90	4	278	24	23	26	26	2.00
34163058--34163127	25	2.8	25	93	0	113	24	22	25	27	2.00
34163332--34163436	27	3.9	27	88	2	140	23	20	18	37	1.94
34163426--34163606	53	3.4	54	86	3	242	29	7	21	41	1.81
34163426--34163606	80	2.3	81	86	3	242	29	7	21	41	1.81
34163426--34163606	27	6.8	27	84	4	224	29	7	21	41	1.81
34163429--34163630	80	2.5	80	82	4	185	30	7	22	40	1.81
34166846--34167164	48	6.7	48	83	2	347	25	18	30	26	1.98
34169791--34169858	30	2.3	30	89	0	100	19	30	30	19	1.96
34177062--34177325	47	5.6	48	75	11	194	22	28	20	29	1.98
34177103--34177225	46	2.6	45	80	10	133	22	29	21	26	1.99
34182616--34182796	100	1.8	100	92	2	310	28	18	24	28	1.98
34182614--34182808	49	3.9	49	76	5	203	28	18	24	27	1.98
34187647--34187904	47	5.5	46	75	10	177	22	30	18	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34187647--34187862	47	4.6	47	77	12	178	21	30	19	29	1.97
34188768--34188864	42	2.3	41	77	13	106	24	20	22	31	1.98
34188786--34188885	42	2.3	43	84	5	123	30	26	19	25	1.98
34192910--34192943	17	2.1	15	89	10	50	73	5	2	17	1.16
34194950--34195005	7	7.6	7	95	4	85	25	1	3	69	1.14
34195596--34195646	14	3.6	14	78	10	50	13	3	39	43	1.63
34196245--34196597	41	8.7	41	86	0	442	28	24	19	26	1.99
34196599--34196698	41	2.4	41	81	0	119	23	20	21	36	1.96
34207643--34207674	13	2.6	12	90	9	55	0	9	0	90	0.45
34209147--34209180	17	1.9	18	88	5	52	52	8	5	32	1.56
34211346--34211373	2	14.0	2	100	0	56	50	0	0	50	1.00
34215365--34215391	13	2.1	13	100	0	54	25	14	37	22	1.93
34215466--34215516	22	2.2	25	89	10	81	27	5	3	62	1.36
34221133--34221166	7	5.0	7	85	7	52	0	14	0	85	0.60
34223610--34223737	41	3.1	41	81	6	127	35	26	21	17	1.95
34227288--34227440	40	3.8	40	78	9	143	22	23	28	25	2.00
34235304--34235454	39	3.8	39	79	10	139	23	22	28	25	1.99
34236931--34236975	2	23.0	2	90	4	74	48	2	0	48	1.13
34244718--34244843	24	5.2	24	71	9	87	34	20	24	19	1.96
34244710--34244844	72	1.9	73	84	7	186	35	20	23	20	1.96
34244799--34244928	24	5.3	24	71	15	72	37	21	22	18	1.94
34244789--34244952	48	3.3	48	67	17	113	35	20	23	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34252491--34252581	45	2.0	45	93	0	155	38	24	12	25	1.90
34262903--34263027	47	2.7	48	80	6	132	22	24	20	32	1.97
34264401--34264521	46	2.6	48	86	5	167	27	19	27	25	1.99
34266587--34266633	23	2.0	23	95	0	85	38	8	29	23	1.84
34270332--34270356	2	12.5	2	100	0	50	48	0	0	52	1.00
34271109--34271316	40	5.2	40	84	4	233	25	22	26	25	2.00
34279211--34279418	40	5.2	40	84	4	233	25	22	26	25	2.00
34279530--34279708	97	1.8	97	98	0	349	23	15	24	37	1.93
34285939--34286188	40	6.3	40	90	2	382	25	28	22	23	1.99
34285939--34286188	79	3.2	80	90	3	391	25	28	22	23	1.99
34285939--34286188	119	2.1	118	95	2	448	25	28	22	23	1.99
34288644--34288707	15	4.3	15	84	7	85	57	17	12	12	1.64
34292002--34292257	40	6.5	40	91	3	412	25	27	23	24	2.00
34292002--34292257	79	3.2	80	93	2	421	25	27	23	24	2.00
34296871--34296979	54	2.0	54	100	0	218	26	29	11	33	1.91
34300160--34300413	39	6.5	40	90	4	378	25	27	22	24	1.99
34300160--34300413	79	3.2	80	91	5	387	25	27	22	24	1.99
34300192--34300417	118	1.9	118	94	3	402	26	26	21	24	1.99
34303885--34303984	51	2.0	51	86	4	139	32	26	19	23	1.97
34304809--34304887	39	2.0	39	97	0	149	36	16	13	32	1.88
34309366--34309423	27	2.1	27	87	0	80	39	20	13	25	1.90
34312334--34312373	19	2.0	20	90	4	64	40	0	17	42	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34320847--34320873	5	5.4	5	100	0	54	77	0	0	22	0.76
34322325--34322394	27	2.5	28	88	2	106	31	25	14	28	1.95
34326287--34326320	16	2.1	16	100	0	68	52	23	11	11	1.70
34326729--34326986	40	6.5	40	86	4	328	25	28	22	23	1.99
34335497--34335546	21	2.5	19	83	9	55	60	0	0	40	0.97
34335962--34336012	9	5.6	9	81	4	66	23	41	1	33	1.66
34340107--34340182	22	3.3	23	76	12	84	30	18	22	28	1.97
34340108--34340228	46	2.6	45	84	2	134	32	18	22	27	1.97
34340164--34340238	23	3.3	23	75	16	75	32	18	25	24	1.97
34346926--34347067	40	3.5	41	84	5	157	26	25	26	22	2.00
34354934--34355111	40	4.6	39	82	8	184	25	24	26	23	2.00
34354934--34355111	79	2.3	79	84	3	218	25	24	26	23	2.00
34358191--34358221	12	2.7	11	90	9	53	29	0	0	70	0.87
34362077--34362252	46	3.8	46	80	4	210	21	21	28	28	1.98
34362073--34362244	93	1.8	93	93	0	299	21	21	29	27	1.99
34365174--34365242	15	4.6	15	83	0	84	11	17	13	57	1.64
34365165--34365244	30	2.7	30	82	7	99	11	17	15	56	1.67
34367615--34367791	46	3.8	46	78	6	187	20	20	29	28	1.98
34367611--34367784	93	1.9	94	91	3	289	21	21	29	27	1.98
34370472--34370636	40	4.2	39	75	6	147	26	23	27	23	2.00
34370473--34370620	40	3.8	38	77	12	149	26	23	27	22	1.99
34370472--34370636	78	2.1	78	81	7	192	26	23	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34378460--34378610	40	3.8	40	77	13	134	27	23	26	22	2.00
34378496--34378626	40	3.3	40	79	2	156	25	23	27	23	2.00
34388808--34388931	29	4.3	29	83	3	162	30	29	12	26	1.93
34389140--34389174	16	2.2	16	94	0	61	8	22	20	48	1.76
34393335--34393454	29	4.2	29	85	1	161	30	30	14	25	1.94
34395093--34395195	29	3.6	29	85	0	134	27	15	32	25	1.96
34403029--34403131	29	3.6	29	87	0	143	26	15	33	25	1.95
34404771--34404804	8	4.4	8	88	3	52	8	20	23	47	1.78
34404769--34404800	16	2.0	16	100	0	64	6	25	25	43	1.77
34418487--34418787	49	6.1	49	96	0	539	29	9	30	30	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345