genome.fa.s12.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  139  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37959906--37960117	47	4.5	47	91	5	331	27	22	22	27	1.99
37960175--37960231	9	5.9	9	73	15	51	35	21	8	35	1.84
37960163--37960233	20	3.5	20	94	0	124	32	21	11	35	1.89
37960168--37960222	11	5.4	11	70	16	55	30	20	12	36	1.90
37960270--37960317	25	1.9	25	86	0	69	25	16	25	33	1.96
37961539--37961797	27	9.6	27	86	5	319	40	8	22	28	1.83
37961541--37961797	134	1.9	135	90	2	410	40	8	22	29	1.83
37964787--37964957	93	1.8	93	89	0	270	30	28	19	21	1.98
37964782--37964954	46	3.7	46	74	10	172	31	27	19	21	1.98
37965376--37965435	30	2.0	30	86	0	84	33	25	5	36	1.78
37985545--37985591	20	2.3	21	88	3	69	36	21	10	31	1.88
37987547--37987735	40	4.7	40	87	2	263	25	22	25	25	2.00
37987547--37987758	40	5.3	39	82	8	241	26	22	25	25	2.00
37990593--37990626	17	1.9	18	88	5	52	50	23	8	17	1.74
37996052--37996085	2	17.0	2	87	0	50	44	0	2	52	1.16
38003503--38003540	2	19.0	2	88	0	58	44	0	2	52	1.14
38004248--38004308	24	2.5	24	91	0	95	31	29	14	24	1.95
38006171--38006281	29	3.9	29	83	3	136	27	32	14	26	1.95
38015020--38015121	28	3.5	29	81	6	109	28	27	14	29	1.95
38020593--38020626	13	2.6	13	90	0	59	38	8	17	35	1.81
38038105--38038173	28	2.5	28	88	6	97	27	14	27	30	1.95
38038105--38038183	28	2.9	27	85	9	81	27	15	25	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38048953--38049003	17	2.8	19	85	11	79	39	9	13	37	1.78
38048982--38049026	23	2.0	23	86	4	65	35	4	20	40	1.72
38048982--38049040	22	2.7	22	76	7	57	33	3	20	42	1.69
38051673--38051719	24	2.0	24	87	8	69	34	0	46	19	1.50
38053430--38053503	34	2.2	33	78	7	76	29	21	22	25	1.99
38057169--38057264	42	2.3	42	85	3	122	29	25	22	22	1.99
38062844--38063097	55	4.8	53	80	8	236	36	17	24	21	1.94
38062854--38063051	108	1.8	110	85	4	285	35	17	24	22	1.95
38063289--38063319	16	1.9	16	93	0	53	41	0	22	35	1.54
38070397--38070650	53	4.8	53	81	8	252	35	17	25	21	1.95
38070407--38070603	108	1.8	109	88	3	308	34	17	25	22	1.96
38070842--38070872	16	1.9	16	93	0	53	41	0	22	35	1.54
38072010--38072101	42	2.2	42	96	0	166	39	21	11	27	1.89
38072248--38072342	25	3.8	25	92	0	154	25	23	25	26	2.00
38072223--38072343	50	2.4	49	81	6	145	25	23	23	27	2.00
38073156--38073207	27	1.9	27	84	7	70	21	23	23	32	1.98
38073286--38073403	27	4.4	27	87	0	173	38	6	21	33	1.80
38073413--38073667	27	9.6	27	79	8	254	28	9	21	40	1.84
38073409--38073667	81	3.2	82	79	7	291	28	8	22	39	1.84
38075101--38075209	28	3.9	28	79	5	105	27	11	30	30	1.92
38075101--38075209	56	1.9	56	83	3	139	27	11	30	30	1.92
38075868--38075892	5	5.0	5	100	0	50	20	20	20	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38078779--38078838	29	2.1	29	100	0	120	23	13	40	23	1.90
38079621--38079677	9	5.9	9	73	15	51	35	8	21	35	1.84
38079619--38079681	20	3.2	20	95	0	117	36	12	19	31	1.89
38079735--38079930	24	8.0	24	82	9	218	29	25	20	24	1.99
38079735--38079909	47	3.6	47	82	10	233	29	25	20	25	1.99
38079794--38079854	30	2.0	30	100	0	122	26	36	21	16	1.94
38079770--38079877	54	2.0	53	92	1	180	26	30	21	21	1.98
38079747--38079901	77	2.0	77	88	2	231	27	27	20	23	1.99
38080125--38080188	31	2.1	31	90	0	101	35	15	23	25	1.94
38087455--38087785	47	7.1	47	90	1	477	33	10	29	26	1.89
38087621--38087695	22	3.3	22	65	17	62	33	12	29	25	1.92
38087667--38087742	22	3.3	22	66	28	59	34	11	28	25	1.91
38087759--38087940	91	2.0	92	91	1	294	35	8	30	25	1.86
38087765--38087940	46	3.9	45	91	2	280	35	9	30	24	1.86
38093414--38093514	28	3.5	28	86	6	114	29	26	13	29	1.94
38101350--38101450	28	3.5	28	86	6	114	29	26	13	29	1.94
38104300--38104363	31	2.1	31	90	0	101	25	23	15	35	1.94
38104557--38104746	24	8.0	24	90	4	278	26	21	23	28	1.99
38104556--38104747	47	4.0	48	90	4	291	26	21	22	29	1.99
38104557--38104747	71	2.7	72	89	4	289	26	21	23	29	1.99
38104801--38104843	20	2.2	20	95	0	77	30	18	13	37	1.90
38104879--38104926	25	1.9	25	82	0	60	25	14	25	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38106084--38106160	27	2.9	27	79	11	86	22	20	20	36	1.95
38106205--38106484	27	10.3	27	75	7	147	35	8	18	38	1.81
38106291--38106430	54	2.6	53	84	4	181	32	7	20	40	1.79
38106408--38106619	27	7.9	27	85	5	223	39	7	23	29	1.82
38106409--38106619	81	2.6	81	84	3	246	39	7	23	29	1.82
38106625--38106714	27	3.3	27	85	3	119	32	10	17	40	1.83
38106608--38106714	54	2.0	54	81	7	128	30	10	20	38	1.86
38106625--38106729	27	3.9	27	79	9	90	34	9	17	39	1.82
38107958--38108078	28	4.3	28	77	7	129	28	15	28	27	1.96
38118796--38118909	43	2.7	42	80	8	149	29	14	24	30	1.95
38122708--38122971	43	6.2	43	79	5	221	30	26	18	25	1.98
38122708--38122971	86	3.1	86	81	8	281	30	26	18	25	1.98
38122708--38122971	129	2.1	128	82	5	309	30	26	18	25	1.98
38128665--38128825	29	5.5	29	97	1	304	24	24	14	37	1.92
38128665--38128855	58	3.2	59	93	2	312	25	24	14	36	1.93
38128664--38128855	88	2.2	89	90	2	307	25	25	14	35	1.93
38132037--38132219	91	2.0	91	95	4	334	27	26	20	24	1.99
38144753--38145341	70	8.2	70	92	5	980	32	15	20	31	1.94
38144947--38145319	77	5.0	77	92	4	603	31	15	19	32	1.93
38144753--38145341	217	2.7	217	97	2	1093	32	15	20	31	1.94
38144753--38145341	147	4.1	140	92	4	980	32	15	20	31	1.94
38144773--38145442	147	4.7	142	86	10	686	30	16	21	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38145392--38145546	54	3.0	52	81	11	194	29	16	18	34	1.93
38146253--38146358	35	3.0	35	95	0	194	16	49	12	22	1.78
38146766--38146833	15	4.6	14	67	25	50	61	19	5	13	1.51
38146759--38146835	32	2.4	32	82	6	102	63	18	6	11	1.48
38147093--38147141	11	4.5	11	82	12	57	0	55	0	44	0.99
38147657--38147717	2	32.0	2	80	9	65	40	0	6	52	1.27
38147877--38147915	2	19.5	2	89	0	60	46	2	2	48	1.29
38148982--38149229	40	6.2	39	83	3	237	25	22	27	25	2.00
38148984--38149213	80	2.9	81	84	3	272	25	23	27	23	2.00
38148982--38149229	120	2.1	119	82	6	304	25	22	27	25	2.00
38152668--38152819	39	3.9	39	91	0	232	25	21	31	21	1.98
38152668--38152849	39	4.6	39	86	3	213	24	22	31	21	1.98
38154870--38154928	29	2.0	29	93	0	100	38	10	20	30	1.86
38157659--38157754	30	3.2	30	73	8	104	42	1	6	50	1.34
38157681--38157785	31	3.4	29	80	7	111	37	2	5	54	1.39
38157659--38157788	61	2.1	61	91	0	206	40	2	6	50	1.40
38164411--38164436	6	4.3	6	100	0	52	46	0	0	53	1.00
38167235--38167269	15	2.5	13	90	9	52	48	2	2	45	1.32
38167410--38167454	23	2.0	23	83	16	58	60	6	2	31	1.35
38167606--38167634	2	14.5	2	100	0	58	51	0	0	48	1.00
38167855--38167896	2	21.5	2	95	4	77	52	0	0	47	1.00
38168789--38168823	17	2.1	17	94	0	61	28	17	20	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38170361--38170401	22	1.9	22	90	5	66	21	29	39	9	1.86
38171544--38171744	46	4.4	46	80	12	166	22	28	18	29	1.98
38171620--38171745	48	2.7	45	81	13	148	23	30	18	28	1.97
38174465--38174566	29	3.6	27	78	7	89	29	32	16	21	1.95
38174494--38174566	28	2.6	29	82	4	85	31	32	15	20	1.93
38181610--38181681	29	2.5	28	86	6	92	30	15	26	27	1.96
38189292--38189363	29	2.5	28	86	6	92	30	15	26	27	1.96
38192071--38192149	25	3.3	25	70	22	87	34	8	26	30	1.87
38192051--38192171	22	5.2	21	67	24	66	33	10	28	26	1.90
38191981--38192174	47	4.1	47	94	0	334	34	11	28	25	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345