genome.fa.s12.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  185  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52643340--52643427	30	3.0	30	81	8	99	10	17	15	56	1.66
52645813--52645988	46	3.8	46	81	10	232	20	21	29	28	1.98
52645809--52645980	93	1.8	93	96	0	317	20	22	30	27	1.98
52647645--52647787	73	2.0	73	97	0	268	30	3	27	37	1.74
52648234--52648395	43	3.8	42	74	9	157	24	17	24	32	1.97
52660360--52660429	27	2.5	28	97	2	133	28	12	27	31	1.93
52661896--52662014	48	2.5	48	87	2	159	20	16	28	34	1.94
52662780--52662847	25	2.7	25	81	0	82	33	17	17	30	1.94
52665651--52665721	20	3.5	20	90	3	108	35	9	16	38	1.82
52665670--52665767	39	2.5	38	77	15	92	35	9	17	37	1.82
52665711--52665762	19	2.7	18	82	5	50	36	7	19	36	1.80
52665649--52665771	20	6.2	20	76	16	87	36	8	17	36	1.82
52668526--52668693	40	4.2	40	79	3	187	26	26	22	25	2.00
52673327--52673490	40	4.1	40	78	6	161	23	21	29	25	1.99
52674927--52674957	2	15.5	2	100	0	62	51	0	48	0	1.00
52676677--52676848	47	3.7	46	80	12	181	25	19	30	24	1.98
52678567--52678661	43	2.2	43	100	0	190	20	25	35	18	1.95
52678567--52678681	43	2.7	43	91	0	131	18	26	36	19	1.94
52684125--52684165	21	2.0	21	90	0	64	29	21	29	19	1.98
52687201--52687230	16	1.9	15	93	6	51	66	3	0	30	1.07
52688070--52688129	24	2.5	24	76	12	61	40	1	3	55	1.27
52689694--52689735	21	2.0	21	100	0	84	23	19	19	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52689697--52689743	21	2.2	21	92	0	76	25	23	14	36	1.93
52691720--52691840	46	2.6	47	88	7	169	28	28	21	21	1.99
52693478--52693667	96	2.0	96	92	0	317	11	34	16	36	1.85
52698858--52698920	30	2.1	30	93	0	108	49	9	17	23	1.76
52701066--52701105	19	2.1	19	95	0	71	42	7	25	25	1.80
52704835--52705007	46	3.7	46	78	13	201	22	19	26	31	1.97
52704832--52705002	93	1.8	93	94	0	306	22	19	27	30	1.98
52711518--52711689	47	3.7	45	78	10	170	26	17	30	25	1.97
52711469--52711726	94	2.8	91	78	11	263	29	17	27	25	1.97
52713058--52713136	31	2.5	31	93	0	131	26	25	20	27	1.99
52713160--52713251	42	2.2	42	92	0	148	39	23	10	26	1.88
52713396--52713491	25	3.8	25	88	2	147	27	23	22	26	2.00
52713396--52713491	51	1.9	50	91	2	156	27	23	22	26	2.00
52714301--52714374	27	2.7	27	89	4	105	18	24	22	33	1.97
52714396--52714728	27	12.3	27	76	5	233	31	7	20	39	1.81
52714398--52714782	54	7.1	54	76	6	224	33	7	20	38	1.81
52714680--52714812	54	2.5	53	86	2	176	41	6	19	32	1.78
52714706--52714828	27	4.5	28	85	4	146	43	6	18	30	1.75
52718420--52718612	40	4.8	39	74	11	131	23	26	23	26	2.00
52718462--52718611	80	1.9	81	84	4	205	24	27	22	25	2.00
52718462--52718613	40	3.8	39	81	7	153	25	26	23	25	2.00
52726454--52726646	40	4.8	39	76	9	140	22	26	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52726454--52726646	80	2.4	80	82	2	217	22	26	24	26	2.00
52726496--52726647	40	3.8	39	82	4	160	24	26	23	25	2.00
52731190--52731407	40	5.5	40	92	2	318	23	23	27	25	2.00
52739207--52739422	40	5.4	40	91	3	323	23	23	27	25	2.00
52739207--52739422	79	2.7	80	90	4	323	23	23	27	25	2.00
52739207--52739422	119	1.8	119	87	7	323	23	23	27	25	2.00
52741086--52741203	44	2.7	44	79	11	127	33	27	20	19	1.97
52750718--52750877	39	4.1	39	92	0	248	23	32	20	23	1.98
52758692--52758854	39	4.2	39	92	0	254	24	32	20	22	1.98
52759435--52759547	39	2.9	39	91	1	172	22	21	32	23	1.98
52759424--52759577	79	1.9	79	84	2	202	22	21	32	24	1.98
52763014--52763171	42	3.7	43	76	12	146	31	27	18	22	1.97
52773787--52773875	38	2.4	38	83	5	110	39	29	20	11	1.87
52773692--52773871	98	1.8	98	82	0	234	38	28	20	12	1.89
52773856--52773894	16	2.4	16	91	0	60	30	23	23	23	1.99
52773814--52773925	54	2.1	54	81	6	129	35	28	20	15	1.93
52773866--52774053	38	4.9	37	82	2	178	36	28	20	14	1.93
52773787--52773960	92	1.9	90	81	10	210	36	28	20	14	1.92
52775009--52775035	13	2.1	13	100	0	54	29	22	14	33	1.94
52779557--52779804	40	6.2	40	80	3	275	26	27	19	26	1.99
52779543--52779804	80	3.3	79	85	3	303	25	27	20	27	1.99
52779557--52779804	120	2.1	120	92	0	415	26	27	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52787906--52788153	40	6.2	40	82	3	293	25	25	21	27	2.00
52787892--52788153	80	3.3	79	88	1	335	24	25	22	27	2.00
52787906--52788153	120	2.1	120	93	0	433	25	25	21	27	2.00
52792533--52792602	27	2.5	28	90	2	115	25	12	28	32	1.93
52795115--52795377	38	6.9	38	77	1	215	38	25	20	15	1.92
52796601--52796644	19	2.3	19	100	0	88	36	4	9	50	1.55
52804433--52804786	27	13.1	27	85	1	188	28	22	8	40	1.83
52804467--52804783	54	5.9	54	84	5	397	28	23	9	39	1.85
52804467--52804782	81	3.9	81	81	9	347	27	23	9	39	1.85
52804433--52804796	54	6.7	55	81	9	303	29	22	8	39	1.84
52804791--52804959	27	6.2	27	84	4	196	36	16	19	27	1.93
52804465--52804833	135	2.7	136	80	7	335	29	22	10	37	1.87
52805159--52805241	27	3.1	26	87	5	112	20	22	20	36	1.95
52805549--52805622	27	2.8	27	85	6	89	17	24	21	36	1.95
52805739--52805868	6	21.8	6	71	21	96	21	16	13	48	1.80
52805739--52805868	30	4.4	30	85	12	171	21	16	13	48	1.80
52806493--52806729	47	5.1	47	95	1	406	31	9	29	28	1.89
52809287--52809541	40	6.4	40	90	0	395	22	21	29	26	1.99
52809291--52809546	80	3.2	80	96	0	449	22	22	28	25	1.99
52809731--52809780	24	2.0	25	88	3	75	30	8	32	30	1.86
52813231--52813352	22	5.3	22	67	18	86	31	9	30	27	1.89
52813185--52813475	47	6.3	47	93	1	464	33	9	28	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52818126--52818155	15	2.0	15	100	0	60	26	26	0	46	1.53
52824637--52824706	27	2.5	28	95	2	124	28	14	27	30	1.95
52824637--52824718	27	3.0	27	85	8	78	29	15	24	30	1.96
52832465--52832534	27	2.5	28	95	2	124	28	14	27	30	1.95
52832465--52832546	27	3.0	27	85	8	78	29	15	24	30	1.96
52834844--52834899	23	2.4	23	93	0	103	25	33	32	8	1.87
52852534--52852640	54	2.0	54	90	0	169	37	23	15	23	1.93
52853200--52853350	3	51.7	3	75	7	132	60	0	5	33	1.26
52854701--52855010	137	2.3	138	90	0	487	28	19	18	33	1.95
52854845--52855371	181	2.9	181	91	0	829	28	21	17	32	1.96
52854930--52855512	45	12.9	44	69	12	292	28	21	17	32	1.96
52855156--52855509	137	2.6	136	85	3	469	28	21	18	32	1.96
52854701--52855525	318	2.6	318	84	5	960	28	20	17	32	1.96
52857938--52858077	37	3.8	37	97	0	253	24	32	20	22	1.97
52858151--52858351	99	2.0	99	98	0	384	28	27	8	34	1.87
52858317--52858704	48	8.1	48	92	0	632	30	27	6	35	1.83
52858218--52858704	96	5.0	96	89	3	653	29	27	7	34	1.84
52871245--52871308	31	2.1	29	83	11	76	68	4	9	17	1.34
52871373--52871416	15	2.9	15	89	0	61	50	0	13	36	1.42
52871542--52871687	3	50.0	3	73	8	113	59	0	7	32	1.30
52872349--52872388	16	2.6	15	84	7	53	85	0	10	5	0.75
52877222--52877306	45	1.9	44	87	2	125	27	14	21	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52895900--52895945	15	3.1	15	100	0	92	28	19	6	45	1.75
52902763--52902904	71	2.0	71	98	0	275	44	7	17	30	1.75
52906539--52906567	8	3.8	8	90	9	51	44	0	0	55	0.99
52908148--52908172	8	3.1	8	100	0	50	48	0	0	52	1.00
52908354--52908487	43	3.1	43	81	3	173	26	29	19	25	1.99
52911912--52911989	41	1.9	41	86	0	111	32	17	8	41	1.81
52911929--52912025	39	2.4	39	84	6	115	26	20	12	40	1.88
52912151--52912175	7	3.6	7	100	0	50	60	0	0	40	0.97
52912173--52912202	15	2.0	15	93	0	51	23	0	3	73	0.98
52912746--52912793	15	3.3	15	82	5	62	45	35	0	18	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345