genome.fa.s12.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  119  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31636906--31636983	3	27.0	3	89	7	126	65	0	0	34	0.93
31638975--31639030	25	2.4	23	82	14	62	39	0	1	58	1.08
31639276--31639327	27	1.9	27	88	7	79	32	3	1	61	1.25
31644938--31644998	30	2.0	30	83	0	77	31	22	8	37	1.84
31646839--31646888	15	3.5	15	82	15	61	24	24	10	42	1.85
31651935--31651978	17	2.6	17	96	0	79	45	15	18	20	1.85
31654915--31655892	210	4.7	210	90	2	1413	30	18	21	29	1.97
31657469--31657524	25	2.4	23	82	14	62	39	0	1	58	1.08
31657772--31657823	27	1.9	27	88	7	79	32	3	1	61	1.25
31658043--31658078	18	2.1	17	89	5	54	36	2	0	61	1.11
31659164--31659197	2	17.0	2	100	0	68	50	0	0	50	1.00
31659275--31659304	9	3.3	9	90	0	51	66	0	30	3	1.07
31659376--31659428	26	2.0	26	100	0	106	37	3	26	32	1.74
31665427--31665529	37	2.8	37	90	0	161	25	30	19	25	1.98
31665670--31666390	48	14.9	48	96	1	1316	30	28	6	34	1.82
31668778--31668916	47	2.8	50	82	8	178	28	15	25	31	1.95
31669116--31669147	16	2.0	16	93	0	55	46	0	18	34	1.49
31674419--31674540	28	4.3	29	74	10	101	28	16	31	23	1.96
31674435--31674546	29	3.9	29	75	5	104	26	16	31	25	1.96
31674397--31674540	56	2.6	56	80	11	145	28	15	29	26	1.96
31677180--31677286	42	2.5	42	96	0	196	28	14	33	22	1.94
31677294--31677363	27	2.5	28	86	2	97	27	14	25	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31679795--31679825	2	15.5	2	100	0	62	51	0	0	48	1.00
31679827--31679960	46	2.9	46	81	5	137	27	29	8	33	1.87
31679890--31680037	47	3.1	47	85	3	197	27	29	11	31	1.92
31688859--31688963	42	2.5	42	95	0	183	30	15	31	22	1.95
31688971--31689040	27	2.5	28	86	2	97	27	14	25	32	1.94
31694524--31694592	25	2.8	25	86	4	86	28	18	27	24	1.98
31696341--31696475	58	2.3	58	90	0	207	30	21	25	22	1.99
31696556--31696683	67	1.9	67	91	0	211	20	14	32	32	1.93
31699170--31699210	22	1.9	21	90	5	64	34	14	21	29	1.93
31699218--31699314	43	2.3	41	78	7	104	28	14	21	35	1.93
31714736--31714787	26	2.0	26	100	0	104	50	11	3	34	1.57
31719729--31720149	177	2.4	177	89	3	641	31	17	24	25	1.97
31719843--31720132	43	6.6	43	68	18	150	29	17	25	27	1.98
31720373--31720399	6	4.5	6	100	0	54	85	0	0	14	0.61
31721855--31721892	20	1.9	20	89	10	60	36	7	5	50	1.54
31725939--31726052	39	2.9	39	93	1	183	23	20	31	24	1.98
31725946--31726082	39	3.5	40	87	1	134	23	22	31	22	1.98
31750601--31750645	22	2.0	22	83	8	56	37	4	2	55	1.32
31755609--31755821	24	9.0	24	90	4	326	28	21	22	28	1.99
31755609--31755822	71	3.0	71	92	3	342	28	21	22	28	1.99
31755609--31755821	47	4.5	48	92	3	326	28	21	22	28	1.99
31755879--31755935	9	5.9	9	73	15	51	35	21	8	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31755867--31755937	20	3.5	20	94	0	124	32	21	11	35	1.89
31755872--31755926	11	5.4	11	70	16	55	30	20	12	36	1.90
31755974--31756021	25	1.9	25	82	0	60	25	14	25	35	1.94
31756859--31756896	20	1.9	20	88	0	58	34	2	10	52	1.50
31758509--31758566	27	2.1	27	90	6	91	44	25	10	18	1.82
31764813--31764850	20	1.9	20	88	0	58	34	2	10	52	1.50
31766455--31766522	27	2.5	28	90	7	113	44	26	10	19	1.82
31773533--31773602	27	2.6	27	95	2	122	30	27	14	28	1.95
31781578--31781647	27	2.6	27	95	2	122	30	27	14	28	1.95
31783435--31783767	39	8.5	39	91	2	499	30	27	21	20	1.98
31784818--31784889	36	2.0	36	100	0	144	38	19	11	30	1.86
31790642--31790701	30	2.0	30	90	0	93	38	8	25	28	1.84
31801428--31801458	16	1.9	16	100	0	62	25	48	12	12	1.77
31803096--31803153	29	2.0	29	100	0	116	13	10	34	41	1.79
31811046--31811261	43	5.1	43	81	7	235	33	23	15	27	1.95
31811690--31811783	47	2.0	47	100	0	188	27	29	12	29	1.93
31824013--31824138	28	4.5	28	90	3	173	31	26	14	27	1.95
31831789--31831857	28	2.5	28	73	4	68	63	2	10	23	1.39
31832125--31832153	13	2.2	13	100	0	58	55	13	0	31	1.39
31841120--31841540	27	15.6	27	86	3	544	27	22	9	40	1.84
31842869--31842945	9	7.9	9	72	16	64	35	9	20	35	1.85
31842878--31842949	11	7.1	11	70	17	66	36	12	19	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31842867--31842949	20	4.2	20	96	0	157	36	12	19	32	1.88
31843004--31843170	24	7.0	23	86	6	219	29	23	21	25	1.99
31843004--31843170	47	3.5	47	89	4	230	29	23	21	25	1.99
31843004--31843169	71	2.3	71	90	3	253	28	23	21	25	1.99
31843363--31843426	31	2.1	31	90	0	101	35	15	23	25	1.94
31846978--31847171	43	4.5	43	80	6	196	33	26	13	26	1.93
31846982--31847170	86	2.2	85	82	7	222	33	27	12	25	1.92
31847992--31848020	5	5.8	5	100	0	58	20	0	0	79	0.74
31850530--31850574	23	2.0	22	82	4	54	28	2	22	46	1.63
31863048--31863387	27	12.6	27	86	2	432	28	22	9	39	1.85
31863079--31863431	81	4.4	81	82	1	224	28	22	8	39	1.84
31864711--31864787	9	7.9	9	74	16	64	36	9	20	33	1.85
31864711--31864787	5	15.6	5	74	17	63	36	9	20	33	1.85
31864709--31864791	20	4.2	20	95	0	148	37	12	19	31	1.88
31864847--31865012	24	7.0	24	85	4	212	30	22	20	26	1.98
31864847--31865013	47	3.5	48	85	4	214	30	22	20	26	1.98
31864847--31864998	71	2.1	71	88	1	223	30	22	20	26	1.98
31865206--31865269	31	2.1	31	81	0	74	35	17	20	26	1.94
31866668--31866854	71	2.7	68	93	5	281	18	28	18	34	1.95
31866691--31866854	71	2.3	71	100	0	328	18	28	17	35	1.94
31866691--31866888	71	2.8	70	92	3	276	20	28	17	33	1.95
31869231--31869293	13	4.8	13	100	0	126	7	46	30	15	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31870310--31870373	31	2.1	31	87	0	92	23	23	15	37	1.93
31870565--31870707	24	6.0	24	90	4	200	27	21	22	28	1.99
31870565--31870706	47	3.0	48	89	5	198	27	21	22	28	1.99
31870564--31870707	71	2.0	72	87	4	211	27	21	22	29	1.99
31870757--31870817	20	3.0	20	92	0	104	32	21	11	34	1.89
31872899--31872970	25	3.0	24	75	15	60	22	20	18	38	1.93
31880313--31880495	80	2.3	81	83	5	230	24	19	27	27	1.99
31880363--31880518	80	2.0	79	86	6	217	25	19	26	27	1.99
31880313--31880495	40	4.6	41	84	6	207	24	19	27	27	1.99
31888432--31888616	40	4.7	40	88	6	252	24	21	27	27	1.99
31888432--31888616	79	2.3	82	86	7	256	24	21	27	27	1.99
31888432--31888649	79	2.7	78	82	11	230	25	21	27	26	1.99
31888432--31888649	119	1.8	119	80	7	264	25	21	27	26	1.99
31893110--31893146	15	2.4	16	95	4	67	40	16	8	35	1.78
31896630--31896785	40	3.9	40	84	5	183	26	19	25	28	1.99
31900718--31900807	25	3.6	25	87	0	117	24	28	16	30	1.97
31900669--31900811	25	5.8	25	77	5	103	22	27	18	31	1.97
31906729--31906756	11	2.5	11	100	0	56	17	10	32	39	1.84
31909902--31909960	26	2.2	25	88	8	82	44	23	15	16	1.86
31909906--31910024	25	4.9	25	68	16	88	44	19	17	18	1.87
31915220--31917480	755	3.0	754	92	1	3758	35	18	9	37	1.83
31918887--31918946	31	1.9	31	96	0	111	20	23	30	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31918918--31919021	42	2.5	42	80	13	124	25	19	24	31	1.98
31921758--31921875	47	2.5	47	94	0	209	34	14	25	25	1.94
31921854--31921998	54	2.6	56	80	3	179	36	16	23	23	1.94
31922731--31922794	31	2.1	31	90	0	101	23	25	15	35	1.94
31923002--31923157	24	6.4	24	95	2	260	28	22	19	29	1.98
31923206--31923268	20	3.4	19	79	20	71	31	19	11	38	1.86
31923219--31923261	16	2.7	15	89	10	68	34	20	9	34	1.85
31925757--31925800	19	2.4	18	85	7	54	40	9	0	50	1.34
31932379--31932500	47	2.6	47	89	0	190	36	12	24	26	1.91
31932479--31932660	55	3.4	54	83	6	235	35	18	24	21	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345