genome.fa.s12.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  169  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47436449--47436616	48	3.6	48	81	4	216	33	19	26	21	1.97
47436498--47436759	141	1.9	138	82	7	332	28	20	27	22	1.99
47436636--47436806	48	3.5	48	78	7	152	26	23	28	21	1.99
47441902--47442111	40	5.2	40	88	2	305	21	28	24	25	1.99
47443898--47444068	93	1.8	93	93	0	297	28	28	21	21	1.98
47443893--47444065	46	3.7	46	78	13	201	29	27	20	21	1.98
47449812--47449986	45	3.8	49	78	15	183	28	28	21	21	1.99
47449817--47449986	93	1.8	92	96	1	313	28	29	21	21	1.98
47456888--47457057	92	1.8	93	93	1	297	28	29	20	21	1.98
47456883--47457060	46	3.9	46	76	11	193	29	28	20	21	1.98
47459594--47459707	23	5.0	23	79	0	120	21	15	22	40	1.91
47459590--47459708	46	2.6	46	79	0	139	21	15	23	39	1.92
47459594--47459726	69	1.9	69	82	0	167	24	15	20	39	1.91
47462820--47462849	15	2.0	15	93	0	51	16	20	36	26	1.93
47465638--47465805	40	4.2	40	82	2	187	25	27	22	25	2.00
47471439--47471633	40	4.9	39	88	1	246	23	31	21	24	1.98
47471470--47471622	79	1.9	79	90	2	245	22	31	20	24	1.98
47480073--47480116	19	2.2	20	84	4	54	40	27	0	31	1.56
47480310--47480387	24	3.2	23	82	8	77	33	19	24	23	1.97
47494364--47494407	23	1.9	23	85	0	61	45	20	18	15	1.85
47494387--47494513	26	5.1	25	75	11	100	41	19	18	19	1.90
47499328--47499389	29	2.1	29	84	0	79	29	12	29	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47507024--47507125	53	1.9	53	97	0	195	37	16	22	23	1.94
47509025--47509156	40	3.3	40	86	4	133	25	22	24	28	2.00
47509083--47509209	39	3.3	39	83	4	148	19	22	26	30	1.98
47509064--47509257	39	4.9	39	80	1	145	20	22	26	30	1.98
47512565--47512783	80	2.7	80	80	5	210	22	26	24	26	2.00
47512605--47512784	40	4.5	40	79	6	177	23	26	23	26	2.00
47514596--47514657	29	2.1	29	84	0	79	29	12	29	29	1.94
47514609--47514685	27	2.7	29	75	18	74	25	14	33	25	1.94
47518616--47518783	40	4.2	40	81	4	178	24	27	23	25	2.00
47518616--47518783	80	2.1	80	83	6	207	24	27	23	25	2.00
47519993--47520035	17	2.5	17	100	0	86	39	20	16	23	1.92
47524452--47524619	40	4.2	40	80	4	169	23	27	23	25	2.00
47526878--47526947	21	3.2	21	66	18	52	21	12	24	41	1.88
47526870--47526957	45	2.0	45	93	0	149	22	12	25	39	1.89
47529082--47529189	27	4.0	26	84	5	126	16	24	22	37	1.94
47529082--47529189	54	2.0	53	87	1	153	16	24	22	37	1.94
47535780--47535812	16	2.1	16	94	0	57	6	33	6	54	1.50
47537024--47537113	27	3.4	27	80	7	103	17	24	17	40	1.91
47537008--47537113	54	2.0	53	84	1	140	18	23	19	37	1.94
47540048--47540248	40	5.1	40	81	8	218	24	22	27	24	2.00
47562427--47562503	23	3.4	22	81	15	77	23	22	15	38	1.92
47566770--47566879	40	2.8	40	85	0	148	23	26	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47571714--47571774	24	2.5	24	97	0	113	14	24	22	37	1.92
47571713--47571830	45	2.6	45	72	10	105	20	25	19	34	1.96
47571796--47571860	26	2.6	25	83	7	78	33	24	18	23	1.96
47574476--47574525	26	1.9	26	87	0	73	36	14	16	34	1.88
47577379--47577448	25	2.8	25	93	0	113	24	22	25	27	2.00
47577479--47577509	16	1.9	16	93	0	53	35	16	19	29	1.93
47578258--47578322	27	2.4	27	82	5	69	21	20	20	38	1.94
47578375--47578554	27	6.6	27	77	9	98	32	10	17	39	1.84
47578439--47578595	81	1.9	81	83	7	203	29	10	19	41	1.84
47578440--47578595	27	5.8	27	78	2	143	29	10	19	41	1.84
47578594--47578764	27	6.3	27	87	2	218	38	8	25	28	1.84
47578594--47578764	54	3.2	54	88	1	245	38	8	25	28	1.84
47578594--47578764	81	2.1	81	91	2	272	38	8	25	28	1.84
47580838--47580892	29	1.9	28	88	3	83	27	27	23	21	1.99
47580906--47580976	31	2.3	31	92	2	117	30	23	14	30	1.94
47580918--47580988	31	2.3	31	90	2	117	29	28	12	29	1.93
47581208--47581277	25	2.8	25	91	0	113	27	22	22	27	1.99
47582087--47582151	27	2.4	27	82	10	71	23	20	18	38	1.93
47582204--47582383	27	6.6	27	77	9	107	32	10	17	39	1.83
47582202--47582371	54	3.1	54	72	12	141	34	10	16	39	1.82
47582269--47582424	81	1.9	81	83	10	203	30	8	18	42	1.81
47582292--47582424	27	4.9	27	77	2	142	30	9	19	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47582293--47582424	54	2.4	54	82	5	160	30	9	19	40	1.84
47582423--47582593	27	6.3	27	86	2	209	38	8	25	27	1.84
47582423--47582593	54	3.2	54	88	1	245	38	8	25	27	1.84
47582423--47582593	81	2.1	81	90	2	263	38	8	25	27	1.84
47583783--47583843	24	2.5	25	78	10	72	37	21	24	16	1.93
47591239--47591273	13	2.7	13	91	8	54	51	2	0	45	1.16
47591511--47591569	30	1.9	31	86	10	86	27	20	5	47	1.71
47592435--47592487	20	2.7	20	90	0	79	13	32	33	20	1.91
47593199--47593402	52	4.0	52	73	12	174	31	27	15	24	1.96
47602155--47602315	29	5.6	29	82	1	162	24	16	33	25	1.96
47609676--47609835	29	5.6	29	82	3	162	24	16	33	25	1.96
47610116--47610276	29	5.6	29	82	1	162	24	16	33	25	1.96
47609409--47610292	441	2.0	441	98	1	1718	31	13	27	27	1.94
47618126--47618219	29	3.2	29	92	0	152	28	14	29	26	1.95
47618122--47618256	58	2.3	58	83	3	166	25	14	33	25	1.95
47623597--47623727	30	4.5	30	86	8	171	28	25	13	32	1.94
47623596--47623727	58	2.3	58	85	4	176	28	26	13	31	1.94
47627952--47628045	29	3.2	29	98	0	179	29	15	27	26	1.96
47627955--47628082	58	2.2	58	84	2	159	27	16	30	25	1.97
47632365--47632398	16	2.2	15	89	5	50	44	0	0	55	0.99
47633816--47633867	23	2.1	26	86	10	74	59	5	5	28	1.44
47640786--47640854	28	2.5	28	93	4	115	30	27	13	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47641607--47641818	41	5.2	39	79	9	201	25	27	21	25	1.99
47649737--47649944	40	5.2	39	86	1	236	26	26	21	25	1.99
47658871--47658905	17	2.1	17	100	0	70	17	22	31	28	1.96
47670292--47670471	35	5.1	35	78	2	164	40	18	12	29	1.87
47674365--47674633	46	5.8	46	74	15	175	26	19	30	24	1.98
47674373--47674633	94	2.8	93	78	11	275	26	19	30	24	1.98
47680884--47680917	15	2.3	15	89	0	50	55	11	8	23	1.63
47682690--47682762	29	2.5	29	100	0	146	28	15	28	27	1.96
47682853--47682883	2	15.5	2	100	0	62	48	0	0	51	1.00
47685673--47685718	23	2.0	23	100	0	92	21	17	8	52	1.71
47686732--47686951	23	9.6	23	72	4	131	20	13	20	45	1.85
47686729--47686951	46	4.9	46	78	3	198	20	13	20	45	1.85
47692918--47692969	26	2.0	26	100	0	104	38	15	15	30	1.88
47697252--47697285	10	3.3	10	84	8	50	61	0	0	38	0.96
47698456--47698501	24	1.9	24	90	0	74	63	4	4	28	1.33
47698777--47698841	25	2.9	23	80	15	66	66	7	0	26	1.19
47698803--47698841	19	2.0	20	90	5	62	71	7	0	20	1.10
47702812--47703019	40	5.2	40	84	1	215	26	25	21	25	1.99
47704901--47704961	24	2.5	24	86	0	77	31	31	14	22	1.94
47712636--47712708	24	3.0	24	83	4	92	28	32	15	23	1.95
47714306--47714369	31	2.1	31	87	0	92	25	21	15	37	1.93
47714580--47714751	24	7.3	24	90	3	260	26	20	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47714584--47714752	47	3.6	47	89	2	268	27	19	23	30	1.98
47714581--47714751	71	2.4	71	87	3	256	26	20	22	30	1.98
47714797--47714847	20	2.5	20	93	0	84	31	21	11	35	1.90
47716094--47716180	27	3.2	27	90	3	122	18	25	20	35	1.95
47716231--47716570	27	12.6	27	75	4	193	32	9	18	38	1.84
47716322--47716516	81	2.4	81	87	2	268	30	9	21	39	1.84
47716322--47716544	81	2.8	81	85	2	225	31	8	20	38	1.84
47716495--47716678	81	2.3	81	88	0	260	38	8	23	29	1.84
47716495--47716678	27	6.8	27	87	0	233	38	8	23	29	1.84
47720032--47720058	12	2.2	12	100	0	54	7	29	40	22	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345