Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  223  of  345  ( 41379 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64781536--64781731
53
3.6
53
73
4
169
20
24
16
38
1.93
64783667--64783727
28
2.2
28
100
0
122
27
22
29
19
1.98
64790171--64790280
40
2.8
40
85
0
148
23
26
23
26
2.00
64798227--64798336
40
2.8
40
85
0
148
23
26
23
26
2.00
64804570--64804611
11
4.1
11
76
17
54
30
2
16
50
1.58
64804581--64804621
19
2.2
19
100
0
82
26
4
14
53
1.61
64809355--64809527
40
4.3
40
86
4
188
24
25
21
27
2.00
64809360--64809527
80
2.1
80
85
0
219
25
26
22
26
2.00
64809398--64809579
80
2.3
80
81
0
211
26
26
21
25
1.99
64821166--64821239
3
24.3
3
72
5
51
36
4
2
56
1.32
64821296--64821346
20
2.4
21
83
9
68
19
5
0
74
1.02
64821716--64821752
13
2.9
13
88
4
58
21
2
0
75
0.92
64824324--64824494
93
1.8
93
96
0
315
27
29
22
20
1.98
64824316--64824496
46
3.9
46
81
9
233
27
29
21
20
1.98
64826870--64826958
30
3.0
30
79
11
94
56
15
17
10
1.67
64826870--64826952
15
5.6
14
73
10
58
55
16
18
9
1.68
64826881--64826958
15
5.2
15
75
9
70
55
15
17
11
1.69
64830451--64830571
39
3.1
39
87
0
179
14
25
19
39
1.90
64830464--64830590
39
3.3
39
80
7
141
14
24
20
40
1.90
64832917--64832973
27
2.1
27
83
6
71
33
15
29
21
1.94
64832926--64832983
27
2.1
27
83
0
71
32
17
31
18
1.94
64836637--64836666
2
15.0
2
100
0
60
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64842623--64842935
90
3.6
90
69
17
268
26
6
14
52
1.65
64842681--64842833
75
2.0
75
93
0
261
26
7
15
49
1.72
64845728--64845774
24
2.0
24
88
12
71
34
17
2
46
1.59
64845739--64845801
28
2.2
29
83
8
76
28
17
1
52
1.54
64845812--64845941
56
2.3
57
78
16
135
27
11
3
56
1.52
64845851--64845966
56
2.1
55
84
6
146
29
11
3
56
1.51
64845933--64845980
23
2.2
22
88
7
71
27
6
0
66
1.15
64846193--64846267
5
12.5
6
71
23
52
26
16
0
57
1.39
64846193--64846261
12
5.8
12
79
14
72
26
17
0
56
1.41
64846193--64846272
23
3.3
23
86
8
99
26
15
0
58
1.37
64846193--64846272
12
6.7
12
74
22
62
26
15
0
58
1.37
64846216--64846319
23
4.5
22
72
21
81
25
11
0
61
1.36
64846386--64846412
12
2.2
12
100
0
54
22
14
0
62
1.31
64846381--64846448
29
2.3
30
87
2
102
23
14
1
60
1.43
64848133--64848238
25
4.4
24
70
11
74
62
3
6
27
1.37
64848274--64848438
26
6.5
26
69
15
98
61
3
4
30
1.32
64848326--64848427
11
8.5
12
68
17
61
65
4
0
28
1.19
64848326--64848424
23
4.1
23
70
20
76
65
5
1
28
1.20
64848372--64848438
27
2.5
27
80
7
75
65
4
1
28
1.21
64848456--64848599
50
3.0
48
81
9
157
56
6
6
29
1.50
64848447--64848628
47
3.7
47
80
7
168
57
5
7
30
1.49
64850597--64850844
40
6.2
40
79
7
137
25
26
22
26
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64850650--64850843
80
2.4
81
82
5
248
25
26
21
26
1.99
64854874--64854898
2
12.5
2
100
0
50
52
0
48
0
1.00
64856185--64856211
13
2.1
13
100
0
54
37
0
0
62
0.95
64860457--64860481
11
2.3
11
100
0
50
24
0
8
68
1.16
64865452--64865499
25
1.9
25
83
8
62
58
4
0
37
1.18
64868092--64868131
18
2.2
19
86
4
55
27
7
22
42
1.80
64874674--64874782
48
2.3
48
85
0
137
33
26
19
21
1.97
64875071--64875112
3
14.0
3
100
0
84
66
0
0
33
0.92
64875835--64875893
3
19.0
3
93
6
100
64
1
0
33
1.04
64880344--64880451
55
2.0
55
80
7
121
25
30
20
23
1.98
64883602--64883662
30
2.0
30
83
0
77
31
22
8
37
1.84
64884564--64884672
48
2.3
48
86
0
155
37
24
18
19
1.94
64894154--64894211
25
2.3
26
93
6
109
27
10
22
39
1.86
64899356--64899496
40
3.5
40
77
6
135
26
24
27
20
1.99
64899390--64899519
40
3.2
40
82
4
165
23
24
28
23
2.00
64904234--64904261
2
14.0
2
100
0
56
50
0
0
50
1.00
64904971--64905115
40
3.6
40
85
4
184
26
24
25
23
2.00
64909590--64909634
3
15.0
3
100
0
90
66
0
0
33
0.92
64910356--64910383
3
9.3
3
100
0
56
67
0
0
32
0.91
64911835--64911928
25
3.8
25
78
10
88
24
23
19
32
1.97
64917681--64917730
20
2.6
19
84
9
57
36
22
0
42
1.54
64919101--64919264
64
2.6
63
80
6
181
48
14
18
18
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64919362--64919416
28
2.0
28
92
0
92
34
10
32
21
1.89
64920177--64920245
21
3.4
21
71
15
72
36
1
7
55
1.37
64920232--64920262
15
2.1
14
94
5
53
35
3
6
54
1.42
64921611--64921652
23
1.9
23
85
9
61
16
4
33
45
1.69
64937827--64937861
16
2.1
16
89
5
52
57
0
0
42
0.99
64945715--64945757
14
3.0
14
82
3
50
46
13
0
39
1.44
64946255--64946283
14
2.1
14
100
0
58
34
6
0
58
1.25
64949181--64949210
2
15.0
2
100
0
60
50
0
0
50
1.00
64953690--64953715
1
26.0
1
100
0
52
0
0
0
100
0.00
64955907--64955972
33
2.0
33
93
0
114
50
4
12
33
1.60
64963600--64963679
41
2.0
41
85
5
108
21
26
25
27
1.99
64984216--64984355
46
3.0
46
81
11
169
22
29
22
26
1.99
64999165--64999205
17
2.4
17
83
0
55
24
14
12
48
1.78
65001753--65001858
40
2.6
41
89
6
160
33
16
17
32
1.92
65003734--65003788
28
2.0
28
96
0
101
32
12
12
41
1.81
65015502--65015652
79
1.9
80
82
6
191
25
20
28
25
1.99
65015499--65015681
40
4.6
40
77
6
167
25
22
26
25
2.00
65020508--65020717
107
2.0
108
99
0
413
35
14
23
26
1.93
65024464--65024574
40
2.8
40
94
1
186
21
32
27
18
1.97
65030174--65030327
29
5.3
29
89
0
229
30
30
12
25
1.93
65033343--65034065
47
15.4
47
92
0
1173
31
8
30
28
1.87
65033823--65033896
22
3.3
22
64
17
62
29
10
31
28
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65043806--65043848
21
2.0
22
86
4
61
58
32
0
9
1.30
65047777--65047963
40
4.7
40
80
4
171
28
22
25
22
1.99
65047777--65047930
80
1.9
80
85
0
209
27
22
26
23
1.99
65047781--65047963
80
2.3
80
80
0
204
28
23
26
21
1.99
65053487--65053527
21
2.0
21
90
0
64
39
0
24
36
1.56
65054837--65055106
135
2.0
135
96
0
495
31
15
20
32
1.94
65057616--65057963
47
7.3
49
95
1
559
32
8
29
29
1.86
65060427--65060609
40
4.6
40
81
8
205
26
20
26
26
1.99
65060427--65060609
79
2.3
81
82
9
225
26
20
26
26
1.99
65060477--65060642
79
2.1
79
81
6
194
26
20
26
26
1.99
65066207--65066271
34
1.9
34
87
6
96
21
26
21
30
1.98
65082069--65082174
28
3.8
28
77
6
115
26
28
15
30
1.96
65082071--65082182
57
2.0
57
84
7
147
26
26
14
32
1.95
65082069--65082186
28
4.2
28
76
8
114
27
26
13
32
1.94
65082398--65082449
24
2.2
24
86
6
70
11
21
13
53
1.70
65083055--65083119
28
2.3
29
76
21
68
55
6
26
12
1.60
65083703--65083728
8
3.2
8
100
0
52
11
0
30
57
1.34
65086371--65086448
23
3.2
24
83
3
95
15
21
19
43
1.87
65088102--65088232
68
1.9
68
81
9
160
32
12
28
26
1.92
65089775--65089845
27
2.6
27
86
0
97
26
12
26
33
1.92
65091052--65091113
26
2.4
27
79
15
76
38
17
29
14
1.89
65091965--65091998
15
2.3
14
85
14
50
38
0
32
29
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65093211--65093260
26
1.9
26
87
0
73
24
14
26
36
1.93
65093249--65093369
29
4.2
29
73
13
101
24
18
18
38
1.92
65093716--65093848
31
4.3
31
93
0
230
54
3
19
22
1.60
65100012--65100084
29
2.5
29
73
10
78
17
23
35
23
1.95
65101496--65101529
17
2.1
16
89
10
52
17
11
5
64
1.45
65104670--65104834
40
4.1
40
83
6
201
26
27
21
24
2.00
65112764--65112948
40
4.7
40
88
6
236
26
27
21
25
1.99
65127764--65127860
5
18.4
5
77
13
72
25
0
1
73
0.90
65127771--65127860
43
2.0
45
83
12
116
25
0
1
73
0.90
65131263--65131322
10
6.0
10
84
11
79
21
8
1
68
1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345