genome.fa.s12.2.7.7.80.10.50.1000.198.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  198  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56570979--56571285	49	6.3	49	94	0	519	29	30	7	31	1.85
56573820--56573937	46	2.6	46	91	0	191	30	30	19	19	1.96
56575762--56575795	2	17.0	2	100	0	68	50	0	0	50	1.00
56580594--56580708	43	2.7	44	83	5	146	34	23	14	26	1.94
56587696--56587722	14	1.9	14	100	0	54	51	0	22	25	1.48
56590533--56590704	46	3.7	45	80	6	184	22	27	20	29	1.98
56592830--56593020	101	1.9	101	83	2	249	26	18	24	31	1.97
56592831--56593166	151	2.3	145	88	4	485	26	17	24	31	1.97
56592831--56593062	50	4.6	50	77	3	232	26	17	25	31	1.97
56593667--56594025	180	2.0	179	82	2	441	38	9	18	33	1.83
56606029--56606214	30	6.4	30	80	12	183	48	13	16	20	1.80
56606029--56606189	6	26.8	6	76	16	156	49	14	16	19	1.79
56606307--56606372	27	2.5	26	80	7	69	37	24	21	16	1.93
56606547--56606605	22	2.7	22	81	0	64	32	22	25	20	1.98
56606693--56606775	27	3.1	26	87	5	112	37	21	21	19	1.94
56606974--56607168	27	7.3	27	86	1	239	25	20	18	35	1.95
56607173--56607658	27	18.2	27	87	6	686	39	10	23	26	1.86
56609673--56609857	6	30.8	6	76	16	179	48	14	17	19	1.81
56609673--56609857	30	6.4	30	82	13	244	48	14	17	19	1.81
56609974--56610039	27	2.5	26	85	7	87	37	22	22	16	1.93
56609974--56610047	27	2.8	27	78	13	82	36	21	24	17	1.95
56609998--56610055	27	2.1	27	84	6	73	36	27	20	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56610212--56610270	22	2.7	22	81	0	64	32	22	25	20	1.98
56610358--56610440	27	3.1	26	87	5	112	37	21	21	19	1.94
56610639--56610833	27	7.3	27	86	1	239	25	20	18	35	1.95
56610838--56611322	27	18.1	27	85	5	653	40	9	22	26	1.85
56610838--56611321	107	4.5	109	85	7	677	40	9	22	26	1.85
56612477--56612633	6	25.8	6	77	14	162	47	14	18	19	1.82
56612477--56612633	85	1.8	85	95	0	287	47	14	18	19	1.82
56612751--56612824	27	2.8	27	74	13	73	36	21	24	17	1.95
56612989--56613047	22	2.7	22	81	0	64	32	22	25	20	1.98
56613135--56613217	27	3.1	26	87	5	112	37	21	21	19	1.94
56613417--56613602	27	6.9	27	80	5	182	25	19	17	37	1.93
56613418--56613601	81	2.3	80	82	2	217	25	19	17	37	1.93
56613444--56613609	54	3.1	53	86	2	226	25	18	18	37	1.93
56613614--56614050	27	16.2	27	86	3	594	40	10	23	26	1.86
56620004--56620044	21	2.0	21	100	0	82	14	29	9	46	1.77
56620619--56620647	14	2.0	15	93	6	51	55	0	44	0	0.99
56624588--56624688	28	3.6	28	79	2	96	28	14	29	26	1.95
56624586--56624694	56	1.9	57	81	5	132	27	14	31	26	1.95
56627712--56627811	46	2.2	46	98	0	191	37	17	12	34	1.86
56641953--56642173	40	5.6	40	90	2	340	23	22	26	26	2.00
56644490--56644532	16	2.7	16	77	0	50	44	18	23	13	1.86
56644747--56644858	28	4.0	28	78	2	100	29	14	29	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56646898--56647115	40	5.5	40	92	2	325	22	23	28	24	1.99
56656440--56656541	43	2.4	43	80	11	129	31	22	19	26	1.98
56666583--56666736	39	3.9	40	91	0	222	22	20	32	25	1.98
56666583--56666736	79	1.9	79	86	2	220	22	20	32	25	1.98
56678665--56678729	24	2.5	26	81	16	73	70	1	15	12	1.23
56680952--56681037	33	2.6	34	81	7	104	25	26	23	24	2.00
56682567--56682733	40	4.2	40	82	2	185	25	27	21	25	1.99
56682567--56682733	80	2.1	79	83	7	205	25	27	21	25	1.99
56683558--56683603	17	2.5	19	74	22	53	34	23	17	23	1.96
56688293--56688459	40	4.2	40	82	2	185	25	27	21	25	1.99
56688293--56688459	80	2.1	79	83	7	205	25	27	21	25	1.99
56689285--56689330	17	2.5	19	74	22	53	34	23	17	23	1.96
56692403--56692555	39	3.9	39	92	0	252	23	20	32	23	1.98
56692404--56692585	39	4.6	39	89	0	247	23	21	31	23	1.98
56697023--56697062	19	2.2	18	86	4	53	27	0	17	55	1.43
56711992--56712133	40	3.5	40	82	1	124	27	24	26	21	1.99
56712030--56712159	40	3.3	39	78	11	147	23	24	26	24	2.00
56713682--56713779	44	2.3	42	84	11	128	24	19	23	32	1.97
56719064--56719226	70	2.3	71	98	1	319	34	17	28	19	1.94
56726634--56726751	41	3.1	41	60	28	98	32	17	28	21	1.96
56726602--56726765	71	2.3	71	100	0	328	35	17	28	18	1.94
56733148--56733310	39	4.2	39	89	3	247	23	20	30	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56733165--56733340	39	4.5	40	87	0	169	23	22	31	22	1.99
56737288--56737422	56	2.4	54	87	3	189	29	14	23	31	1.95
56737288--56737451	56	2.9	56	84	6	174	28	15	25	31	1.95
56740448--56740477	12	2.5	12	94	0	51	30	43	20	6	1.77
56740179--56740457	63	4.5	62	77	4	240	24	26	18	29	1.98
56743894--56744118	80	2.8	79	86	7	278	29	19	24	27	1.98
56743876--56744057	40	4.6	40	92	2	278	29	18	24	26	1.98
56743876--56744092	120	1.8	120	81	7	271	28	18	25	27	1.98
56747212--56747266	27	2.0	28	86	13	80	34	18	16	30	1.93
56750244--56750584	47	7.3	47	96	0	601	34	12	28	24	1.91
56755590--56755877	40	7.2	40	82	5	332	25	22	27	24	2.00
56755593--56755814	119	1.9	121	86	3	324	25	24	27	23	2.00
56755596--56755891	119	2.5	118	77	10	298	25	21	27	25	2.00
56757597--56757624	13	2.2	13	100	0	56	50	14	17	17	1.79
56769271--56769302	16	2.0	16	100	0	64	18	12	12	56	1.67
56770228--56770269	21	1.9	23	85	9	61	33	42	0	23	1.55
56770547--56770581	17	2.1	17	94	0	61	37	31	11	20	1.88
56775284--56775317	18	1.9	18	94	5	61	76	0	20	2	0.92
56784496--56784667	93	1.8	93	94	0	308	26	30	22	20	1.98
56784491--56784663	46	3.8	45	81	10	215	27	28	22	20	1.99
56787687--56787865	40	4.4	40	82	3	198	25	23	26	24	2.00
56787687--56787865	80	2.2	81	85	3	236	25	23	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56787808--56787891	40	2.1	40	82	4	98	26	27	26	20	1.99
56787721--56787891	80	2.1	80	81	2	191	27	23	25	23	2.00
56789840--56789884	18	2.5	18	81	0	54	64	0	2	33	1.06
56791218--56791246	14	2.1	14	100	0	58	48	0	10	41	1.37
56803576--56803603	2	14.0	2	100	0	56	50	0	0	50	1.00
56813189--56813502	49	6.7	47	72	16	190	23	29	19	27	1.98
56817091--56817261	46	3.7	45	80	7	182	28	18	29	22	1.98
56817091--56817310	94	2.3	94	80	5	239	28	20	28	23	1.98
56821200--56821235	18	2.0	18	94	0	63	41	5	22	30	1.76
56824264--56824423	29	5.5	30	86	8	213	27	25	13	33	1.93
56824264--56824423	59	2.8	57	87	6	207	27	25	13	33	1.93
56825738--56825773	18	1.9	18	88	5	54	11	25	0	63	1.27
56827475--56827637	44	3.6	44	72	11	157	23	18	30	26	1.98
56827518--56827732	49	4.5	49	74	9	183	27	20	28	22	1.99
56827477--56827686	93	2.3	93	93	0	348	25	20	29	25	1.99
56839458--56839609	39	3.9	39	92	0	232	25	21	30	21	1.98
56839466--56839637	39	4.4	39	86	3	211	25	23	30	20	1.98
56846863--56846961	38	2.5	39	90	3	146	24	21	32	22	1.98
56846866--56846991	40	3.2	40	84	2	157	23	23	31	22	1.98
56854768--56854919	39	3.9	39	92	0	241	24	22	31	21	1.98
56854768--56854949	39	4.6	39	88	3	222	24	23	31	21	1.98
56859891--56859948	14	3.9	14	76	14	55	48	0	6	44	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56861003--56861087	43	2.0	43	84	13	113	23	15	30	30	1.95
56864296--56864467	93	1.8	93	94	0	308	27	29	22	20	1.98
56864289--56864463	46	3.8	45	83	10	228	29	28	22	20	1.98
56864339--56864482	46	3.1	46	78	16	163	29	27	21	20	1.98
56865780--56865905	49	2.6	49	81	8	141	30	23	24	22	1.99
56868736--56868925	47	4.0	47	90	0	281	33	11	28	25	1.91
56869136--56869239	37	2.8	37	98	0	199	25	18	31	24	1.97
56870238--56870317	39	2.1	39	95	0	142	25	25	26	23	2.00
56879178--56879449	48	5.7	46	73	15	198	25	30	17	25	1.97
56885152--56885299	40	3.7	39	82	3	143	25	22	27	23	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345