genome.fa.s12.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  189  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53492834--53492965	29	4.6	29	88	0	165	29	15	31	24	1.95
53498955--53499084	40	3.2	40	77	13	142	24	26	24	23	2.00
53498971--53499122	40	3.8	40	80	5	155	22	26	24	26	2.00
53498971--53499122	80	1.9	80	83	5	200	22	26	24	26	2.00
53510792--53511009	40	5.5	40	91	2	334	23	22	28	25	1.99
53519104--53519319	40	5.5	40	89	4	316	22	23	28	25	1.99
53519100--53519319	78	2.8	80	87	6	324	23	22	28	25	2.00
53519104--53519316	118	1.8	118	86	6	315	22	23	28	25	1.99
53524651--53524761	44	2.5	43	89	4	159	32	32	17	18	1.94
53527816--53528033	40	5.5	40	88	2	289	25	27	22	23	2.00
53536155--53536240	37	2.3	37	97	0	163	23	33	19	23	1.97
53536289--53536604	48	6.6	48	95	0	524	30	27	8	33	1.87
53540947--53541156	40	5.2	40	87	2	305	25	24	28	21	1.99
53549858--53549904	23	2.0	23	95	0	85	42	17	8	31	1.79
53559529--53559571	19	2.3	19	87	0	59	51	13	6	27	1.67
53561459--53561615	43	3.7	43	70	10	124	30	24	17	28	1.97
53565834--53566009	46	3.8	46	79	12	216	20	21	29	28	1.98
53565831--53566002	93	1.8	93	96	0	317	20	21	29	27	1.98
53570560--53570618	29	2.0	29	100	0	118	23	33	20	22	1.97
53572492--53572699	40	5.2	39	84	1	218	25	25	22	25	2.00
53572492--53572697	80	2.6	81	84	3	247	25	26	22	25	2.00
53580637--53580841	40	5.2	40	81	5	202	25	24	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53580638--53580754	38	3.0	38	84	2	153	25	25	23	24	2.00
53580638--53580788	78	1.9	78	86	5	216	24	25	24	25	2.00
53583069--53583407	123	2.8	123	96	0	606	30	10	25	33	1.90
53583376--53583539	40	4.1	40	87	0	202	23	21	27	27	1.99
53590620--53590958	123	2.8	123	96	0	606	30	10	25	33	1.90
53590927--53591090	40	4.1	40	87	0	202	23	21	27	27	1.99
53599824--53599984	43	3.8	42	76	13	166	24	16	24	34	1.95
53603422--53603472	20	2.5	19	84	12	66	17	31	11	39	1.86
53603435--53603481	21	2.5	20	83	16	57	12	31	8	46	1.72
53612380--53612558	46	3.9	46	82	10	238	21	21	29	27	1.99
53612379--53612550	93	1.8	93	94	0	308	20	22	29	27	1.98
53615570--53615760	47	4.1	47	91	2	321	28	20	22	28	1.98
53615549--53615761	24	9.0	24	92	3	326	28	21	22	28	1.99
53615819--53615875	9	5.9	9	73	15	51	35	21	8	35	1.84
53615807--53615877	20	3.5	20	94	0	124	32	21	11	35	1.89
53615812--53615866	11	5.4	11	70	16	55	30	20	12	36	1.90
53615913--53615960	25	1.9	25	86	0	69	27	14	25	33	1.94
53618310--53618404	44	2.2	42	83	7	111	25	17	26	30	1.98
53618308--53618465	42	3.7	42	74	11	135	25	18	25	31	1.98
53621142--53621201	30	2.0	30	90	0	93	38	8	25	28	1.84
53628607--53628666	30	2.0	30	86	0	84	40	8	23	28	1.83
53636259--53636400	44	3.3	42	81	6	160	26	19	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53643478--53643644	40	4.2	40	78	7	153	26	22	26	24	2.00
53649010--53649178	92	1.8	92	94	2	304	21	21	29	27	1.98
53649013--53649183	45	3.7	46	79	14	210	21	21	28	28	1.98
53656592--53656714	45	2.7	46	81	14	139	22	20	28	28	1.99
53665985--53666133	40	3.7	40	80	5	147	27	24	26	21	1.99
53677087--53677163	39	2.0	39	89	0	118	28	29	19	22	1.98
53681507--53681575	28	2.5	28	95	2	122	18	10	27	43	1.82
53683204--53683241	20	1.9	20	88	0	58	52	10	2	34	1.50
53689515--53689583	28	2.5	28	95	2	122	18	10	27	43	1.82
53691201--53691238	20	1.9	20	88	0	58	52	10	2	34	1.50
53695294--53695392	28	3.5	29	83	6	114	30	27	15	27	1.96
53703308--53703381	28	2.6	28	91	4	114	31	25	14	28	1.95
53706352--53706416	28	2.3	28	97	0	121	15	44	23	16	1.86
53707470--53707636	46	3.6	45	79	10	160	25	28	16	29	1.97
53707513--53707633	48	2.6	46	92	2	188	26	26	16	30	1.97
53712550--53712721	93	1.8	93	93	0	299	27	28	22	22	1.99
53712543--53712718	46	3.8	46	79	10	205	28	28	21	21	1.99
53712551--53712737	46	4.0	46	72	19	147	27	28	21	22	1.99
53715679--53715833	29	5.4	29	70	11	113	28	31	18	21	1.97
53715697--53715865	58	2.9	58	91	0	268	28	29	18	22	1.98
53715764--53715862	29	3.4	29	72	10	103	30	26	20	23	1.98
53716031--53716322	43	6.8	43	88	0	422	33	31	22	12	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53719240--53719277	20	1.9	20	88	0	58	34	2	10	52	1.50
53720902--53720970	28	2.5	28	95	2	122	43	27	10	18	1.82
53724910--53725039	40	3.2	40	81	2	163	24	28	23	23	2.00
53729213--53729250	20	1.9	20	88	0	58	34	2	10	52	1.50
53730875--53730943	28	2.5	28	95	2	122	43	27	10	18	1.82
53743705--53743876	93	1.8	93	96	0	317	27	29	21	20	1.98
53743698--53743873	46	3.8	46	79	12	216	28	29	21	20	1.98
53765090--53765218	28	4.6	29	74	9	97	24	34	17	24	1.95
53772973--53773046	29	2.6	29	95	0	139	27	31	14	27	1.95
53772914--53773046	58	2.3	58	80	2	133	24	33	17	24	1.96
53775469--53775517	17	2.8	18	74	22	50	24	18	22	34	1.96
53776340--53776506	40	4.2	40	79	6	169	25	21	27	25	1.99
53783465--53783513	17	2.8	18	74	22	50	24	18	22	34	1.96
53784336--53784502	40	4.2	40	79	6	169	25	21	27	25	1.99
53789400--53789432	2	16.5	2	100	0	66	48	0	0	51	1.00
53795572--53795598	14	1.9	14	100	0	54	70	0	0	29	0.88
53800716--53800848	24	5.6	23	88	6	167	34	24	17	24	1.96
53800716--53800848	48	2.8	48	93	2	214	34	24	17	24	1.96
53808607--53808739	24	5.6	23	88	6	167	34	24	17	24	1.96
53808607--53808739	48	2.8	48	93	2	214	34	24	17	24	1.96
53824530--53824577	24	2.0	24	100	0	96	29	20	29	20	1.98
53831911--53832118	37	5.6	37	96	0	389	23	32	18	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53832152--53833113	48	20.0	48	91	0	1420	30	27	6	35	1.82
53834729--53834920	39	4.9	39	89	1	242	23	31	20	23	1.98
53834759--53834920	39	4.2	39	92	1	254	24	32	19	23	1.98
53846239--53846422	40	4.6	40	81	2	172	28	22	26	22	1.99
53846279--53846467	80	2.4	80	77	5	184	24	22	29	23	1.99
53853175--53853249	34	2.2	34	83	4	98	37	18	5	38	1.74
53853919--53853955	19	1.9	19	89	10	58	5	18	2	72	1.15
53870281--53870552	49	5.7	49	91	2	385	33	8	29	27	1.87
53877676--53877841	40	4.2	40	81	3	176	24	27	21	25	1.99
53877692--53877803	39	2.8	38	85	4	134	25	29	22	23	1.99
53877692--53877841	79	1.9	78	83	6	196	24	28	22	26	1.99
53878664--53878709	17	2.5	19	74	22	53	34	23	17	23	1.96
53885659--53885825	40	4.2	40	81	2	176	24	27	22	25	2.00
53885675--53885825	80	1.9	79	83	6	198	23	27	22	25	2.00
53886649--53886694	17	2.5	19	74	22	53	34	23	17	23	1.96
53889184--53889252	28	2.5	28	95	2	122	18	10	27	43	1.82
53890880--53890917	20	1.9	20	88	0	58	52	10	2	34	1.50
53897192--53897260	28	2.5	28	95	2	122	18	10	27	43	1.82
53898887--53898924	20	1.9	20	88	0	58	52	10	2	34	1.50
53903658--53903796	57	2.4	58	78	3	147	30	15	22	30	1.95
53913200--53913291	42	2.1	43	80	7	98	27	11	25	35	1.91
53915099--53915262	90	1.8	90	85	2	231	29	26	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53915324--53915449	48	2.6	48	83	2	137	28	26	15	29	1.96
53925581--53925733	42	3.5	42	72	15	130	25	26	18	29	1.98
53925837--53925918	41	2.0	41	100	0	164	24	29	19	26	1.98
53929888--53929925	20	1.9	20	88	0	58	34	2	15	47	1.60
53943670--53943836	46	3.6	46	74	20	152	29	18	28	23	1.98
53943764--53943886	46	2.7	43	79	11	122	29	20	27	22	1.98
53945485--53945544	25	2.4	26	74	17	65	36	6	1	55	1.36
53951164--53951215	27	1.9	27	84	7	70	30	17	13	38	1.88
53958948--53959000	27	2.0	27	85	7	72	30	16	18	33	1.94
53959050--53959083	18	1.9	17	88	5	50	35	8	23	32	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345