genome.fa.s12.2.7.7.80.10.50.1000.321.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  321  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96175856--96175893	20	2.1	19	85	14	53	52	15	5	26	1.64
96177163--96177205	18	2.4	19	80	11	54	46	11	6	34	1.67
96186021--96186060	16	2.5	16	95	0	71	37	5	0	57	1.21
96196748--96196913	89	1.9	89	87	2	244	33	24	10	30	1.90
96199154--96199281	39	3.3	39	86	0	184	31	18	25	24	1.98
96199153--96199307	78	2.0	76	82	5	186	30	20	26	23	1.98
96204458--96204486	2	14.5	2	100	0	58	51	0	0	48	1.00
96209072--96209284	107	2.0	107	90	0	336	30	15	18	34	1.93
96216785--96216985	59	3.4	59	80	4	219	28	29	10	31	1.90
96220032--96220137	55	2.0	50	87	8	149	20	16	20	41	1.90
96220036--96220168	55	2.4	54	78	9	135	25	17	22	34	1.96
96220328--96220410	11	7.7	11	73	15	59	19	19	0	61	1.35
96220328--96220410	5	15.6	5	72	16	60	19	19	0	61	1.35
96220321--96220382	27	2.3	28	80	8	74	17	12	0	69	1.19
96220336--96220383	16	2.9	16	87	3	60	20	14	0	64	1.28
96220403--96220468	21	3.1	21	78	8	71	27	7	0	65	1.20
96220414--96220502	42	2.1	44	89	4	137	28	8	0	62	1.25
96220420--96220488	21	3.3	20	74	20	61	27	5	0	66	1.14
96220439--96220508	22	3.2	21	73	13	70	28	10	0	61	1.28
96221201--96221302	41	2.4	41	81	3	123	60	0	8	30	1.27
96221221--96221293	21	3.5	21	76	14	71	64	0	5	30	1.16
96221220--96221304	20	4.2	20	73	11	75	62	0	7	30	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96221297--96221380	11	7.8	10	74	12	69	58	0	20	21	1.40
96221297--96221380	16	5.2	15	76	11	69	58	0	20	21	1.40
96221297--96221380	5	15.6	5	78	9	69	58	0	20	21	1.40
96221297--96221385	21	4.1	21	74	7	54	60	0	19	20	1.36
96221565--96221811	52	4.8	52	81	3	264	25	21	17	35	1.95
96222336--96222421	20	4.2	21	71	19	74	62	0	6	30	1.21
96222381--96222421	19	2.2	19	91	8	66	65	0	4	29	1.13
96222323--96222424	43	2.3	44	84	6	134	60	0	9	29	1.28
96222414--96222479	5	12.6	5	81	12	71	63	0	16	19	1.31
96222414--96222479	11	6.3	10	80	14	71	63	0	16	19	1.31
96222414--96222480	16	4.2	16	81	9	75	64	0	16	19	1.30
96223042--96223177	54	2.5	53	86	8	175	30	18	22	28	1.97
96223308--96223376	20	3.4	20	78	11	61	62	0	8	28	1.25
96223369--96223468	5	18.6	5	78	10	83	61	0	19	20	1.35
96223397--96223458	11	5.7	11	75	3	63	62	0	14	22	1.31
96223374--96223468	16	5.8	16	79	9	95	61	0	18	20	1.35
96223652--96223853	105	1.9	106	87	1	298	27	20	18	34	1.96
96223649--96223850	54	3.8	54	82	6	243	26	20	18	34	1.96
96223944--96224345	223	1.8	223	85	2	565	32	16	16	33	1.92
96225788--96225830	21	2.0	21	100	0	86	18	18	4	58	1.56
96226946--96226984	21	1.9	20	85	15	53	33	2	5	58	1.33
96227125--96227214	45	2.0	45	89	4	137	35	21	4	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96242638--96242699	26	2.3	27	78	10	74	37	24	8	30	1.84
96242804--96242918	28	4.2	28	90	3	164	19	23	20	36	1.95
96242804--96242918	55	2.1	54	87	4	160	19	23	20	36	1.95
96250572--96250605	17	2.0	17	88	0	50	41	11	14	32	1.82
96251792--96251833	21	2.0	21	85	0	57	23	21	16	38	1.93
96251826--96251890	23	2.7	24	78	4	78	16	20	24	38	1.93
96254119--96254146	2	14.0	2	100	0	56	50	0	0	50	1.00
96257452--96257642	96	2.0	96	87	0	274	14	35	16	34	1.89
96263353--96263379	2	13.5	2	100	0	54	51	0	0	48	1.00
96265970--96266018	19	2.6	19	78	12	57	28	2	12	57	1.46
96275196--96275224	2	14.5	2	100	0	58	48	0	0	51	1.00
96275599--96275697	20	5.1	19	75	10	74	44	6	1	48	1.34
96277426--96277460	11	3.3	11	84	8	54	71	0	2	25	1.00
96282356--96282397	22	1.9	22	85	0	57	52	7	4	35	1.50
96287636--96287775	46	3.0	46	85	2	165	22	21	15	41	1.90
96287651--96287776	46	2.7	46	86	0	171	21	21	14	42	1.88
96295093--96295125	13	2.8	12	90	9	50	36	0	12	51	1.39
96295143--96295201	10	5.9	10	84	7	84	20	10	1	67	1.28
96300028--96300119	40	2.4	39	78	5	114	38	32	11	17	1.86
96302073--96302145	37	2.0	37	97	0	137	28	15	26	30	1.96
96303781--96303931	53	2.8	54	88	6	209	25	15	27	30	1.96
96306428--96306478	3	17.0	3	76	15	52	33	0	1	64	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96306428--96306478	15	3.4	15	89	5	68	33	0	1	64	1.05
96309750--96309788	18	2.1	19	85	9	53	28	5	38	28	1.78
96313608--96313649	21	2.1	19	86	8	57	76	4	4	14	1.12
96333969--96334033	24	2.8	23	86	6	78	40	16	12	30	1.86
96334264--96334320	12	4.8	12	77	12	64	50	14	15	19	1.77
96334276--96334323	24	2.0	24	95	0	87	47	16	14	20	1.82
96342826--96342895	31	2.3	31	90	4	108	27	22	15	34	1.95
96343482--96343526	22	2.0	22	91	0	72	33	2	15	48	1.57
96348080--96348124	22	2.0	22	91	0	72	33	2	15	48	1.57
96349131--96349186	27	2.1	26	93	3	94	14	23	3	58	1.51
96349677--96349728	20	2.7	18	80	13	59	34	3	15	46	1.64
96349869--96349926	28	2.1	28	83	6	73	48	6	3	41	1.47
96356099--96356131	12	2.8	12	100	0	66	18	15	15	51	1.77
96357202--96357341	62	2.3	62	86	1	183	25	25	26	22	2.00
96360385--96360452	33	2.1	33	100	0	136	25	8	25	41	1.84
96361805--96361853	17	2.9	18	75	22	52	10	20	2	67	1.30
96371619--96371687	15	4.6	15	83	0	84	11	17	13	57	1.64
96371610--96371697	30	3.0	30	81	8	99	10	17	15	56	1.66
96374072--96374247	46	3.8	46	81	10	232	20	21	29	28	1.98
96374068--96374239	93	1.8	93	96	0	317	20	22	30	27	1.98
96376982--96377020	6	6.3	6	84	3	51	15	5	2	76	1.06
96381440--96381611	46	3.7	46	75	13	172	21	19	29	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96390215--96390271	28	2.0	28	96	0	105	31	24	3	40	1.72
96397353--96397398	6	7.7	6	85	0	65	47	10	2	39	1.51
96397352--96397398	12	3.9	12	88	0	76	46	10	2	40	1.50
96398661--96398697	7	5.4	7	93	3	58	48	0	27	24	1.51
96400145--96400359	40	5.4	40	86	0	295	23	16	25	34	1.95
96400136--96400359	80	2.8	80	89	0	340	23	16	24	35	1.94
96400344--96400417	28	2.6	28	85	4	96	22	12	32	32	1.91
96400370--96400430	28	2.2	28	84	0	77	26	11	34	27	1.91
96404487--96404524	14	2.7	14	95	0	67	36	5	18	39	1.73
96411878--96411908	2	15.5	2	93	0	53	51	0	0	48	1.00
96416331--96416461	38	3.4	38	92	1	217	24	23	29	22	1.99
96425275--96425302	14	2.0	14	100	0	56	50	14	7	28	1.69
96428892--96428939	2	24.0	2	100	0	96	0	50	0	50	1.00
96450635--96450896	94	2.8	94	91	2	413	29	19	5	45	1.73
96458014--96458044	8	3.9	8	100	0	62	38	0	0	61	0.96
96458058--96458106	19	2.6	18	87	9	71	34	0	0	65	0.93
96458020--96458090	29	2.5	28	77	11	72	30	0	2	66	1.06
96458034--96458102	29	2.3	31	77	5	79	37	0	2	59	1.12
96458950--96459009	22	2.8	22	79	18	65	25	11	5	58	1.53
96459037--96459099	30	2.1	30	90	0	99	25	3	15	55	1.55
96459182--96459221	18	2.2	19	86	8	57	20	0	10	70	1.16
96464354--96464394	22	1.9	21	85	14	57	53	19	2	24	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96480291--96480514	53	4.2	54	79	2	227	20	24	16	37	1.93
96480320--96480514	55	3.6	53	79	2	201	20	24	18	36	1.94
96481977--96482082	53	2.0	53	88	3	160	32	11	15	41	1.82
96485689--96485733	20	2.2	20	84	4	54	28	6	4	60	1.42
96492927--96493105	84	2.1	87	83	7	224	43	11	18	26	1.85
96494252--96494291	2	20.0	2	100	0	80	50	0	0	50	1.00
96495412--96495440	9	3.2	9	100	0	58	34	10	10	44	1.73
96495489--96495523	18	1.9	18	94	0	61	37	20	11	31	1.88
96497881--96497941	6	10.2	6	96	0	104	63	0	19	16	1.30
96498932--96498966	16	2.1	17	89	5	54	37	17	2	42	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345