genome.fa.s12.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  35  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10610693--10610722	15	2.0	15	93	0	51	30	0	16	53	1.44
10613003--10613206	40	5.2	40	84	3	243	25	21	26	26	1.99
10621211--10621422	40	5.3	40	85	2	221	25	22	26	25	2.00
10622835--10622970	24	5.7	24	91	0	200	19	13	29	37	1.90
10629216--10629754	46	11.7	46	94	0	846	37	16	24	21	1.93
10629934--10629972	19	2.1	18	85	4	51	53	2	17	25	1.56
10634310--10634435	24	5.3	23	79	14	112	20	13	30	35	1.91
10634308--10634433	48	2.6	48	85	5	157	20	13	29	36	1.91
10635658--10635687	15	2.0	15	93	0	51	50	13	10	26	1.73
10638456--10638535	25	3.2	25	62	13	65	41	6	20	32	1.77
10638428--10638534	50	2.1	50	100	0	214	42	5	17	33	1.73
10642535--10642578	21	2.1	22	87	8	65	47	6	4	40	1.50
10646364--10646423	18	3.3	18	81	6	68	70	0	0	30	0.88
10646352--10646451	39	2.5	38	80	16	114	61	1	1	37	1.10
10646350--10646451	40	2.6	38	79	14	118	59	0	0	38	1.10
10661968--10662014	18	2.7	18	80	12	53	42	0	34	23	1.54
10664250--10664373	33	3.8	33	96	0	230	29	42	9	17	1.81
10683716--10683891	46	3.8	46	79	12	216	20	21	29	28	1.98
10683713--10683884	93	1.8	93	96	0	317	20	21	29	27	1.98
10688179--10688245	27	2.4	27	82	12	73	25	5	1	67	1.22
10689650--10689711	27	2.3	27	80	0	70	51	9	1	37	1.45
10691711--10691760	23	2.0	25	85	11	68	38	20	22	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10693317--10693382	15	4.1	15	72	24	55	42	0	1	56	1.08
10693315--10693381	34	2.0	32	88	11	100	44	0	1	53	1.09
10693315--10693362	17	2.8	17	71	22	55	43	0	0	56	0.99
10693476--10693514	13	3.1	13	89	10	55	43	0	5	51	1.24
10695848--10695912	25	2.5	27	80	12	73	38	0	3	58	1.14
10699296--10699374	28	2.6	31	77	16	94	48	2	2	46	1.29
10700517--10700555	20	1.9	21	85	15	55	51	0	0	48	1.00
10712749--10712776	4	7.0	4	100	0	56	75	0	0	25	0.81
10715266--10715352	42	2.1	42	100	0	174	28	19	29	21	1.98
10720040--10720087	21	2.3	21	88	0	78	22	25	25	27	2.00
10723736--10723806	31	2.3	31	82	4	81	42	4	11	42	1.60
10724699--10724724	12	2.2	12	100	0	52	15	7	7	69	1.35
10726329--10726361	16	2.1	16	100	0	66	36	0	30	33	1.58
10728196--10728281	31	2.6	31	90	9	127	24	13	2	59	1.47
10728339--10728446	3	34.3	3	75	14	85	26	5	5	62	1.40
10729281--10729757	127	3.7	127	79	5	539	36	20	16	27	1.93
10729281--10729753	258	1.8	257	85	4	657	36	19	16	27	1.93
10731764--10732250	45	10.9	45	73	12	344	25	22	19	32	1.97
10731726--10732292	134	4.2	134	93	0	888	26	22	19	31	1.98
10731727--10732357	45	14.1	43	70	17	203	26	22	19	31	1.98
10732449--10732572	64	1.9	64	83	6	162	35	16	19	29	1.93
10743800--10744275	127	3.7	127	78	5	485	37	19	15	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10747710--10747781	23	3.2	23	76	5	67	34	1	0	63	1.03
10747771--10747858	41	2.1	41	82	0	104	23	2	9	64	1.34
10751798--10751867	25	3.0	25	87	8	94	38	5	4	51	1.45
10757177--10757265	40	2.2	40	88	4	126	37	16	12	33	1.87
10757202--10757313	40	2.8	40	83	0	134	35	17	14	32	1.90
10758948--10758981	2	17.0	2	100	0	68	0	0	50	50	1.00
10772943--10773254	46	7.0	46	86	6	399	38	15	24	22	1.92
10772953--10773208	84	2.9	87	89	5	365	37	15	24	22	1.93
10777294--10777583	3	97.0	3	73	14	201	63	2	4	30	1.26
10782452--10782481	16	1.9	16	93	6	53	33	0	0	66	0.92
10782747--10782781	18	1.9	18	88	0	52	45	5	0	48	1.26
10784513--10784575	29	2.2	27	78	10	63	57	1	12	28	1.45
10784567--10784622	28	2.0	27	82	6	67	57	3	8	30	1.47
10784608--10784683	26	2.8	26	78	7	64	50	3	18	27	1.65
10784789--10784859	23	3.0	23	74	12	63	59	2	5	32	1.35
10784790--10784864	22	3.2	23	72	14	55	58	2	6	32	1.38
10787035--10787283	44	5.6	45	76	2	171	29	22	17	30	1.97
10787035--10787203	89	1.9	89	81	4	207	28	23	17	30	1.97
10788940--10789168	46	5.0	46	93	2	370	23	24	14	38	1.92
10788940--10789168	93	2.5	92	92	2	370	23	24	14	38	1.92
10791589--10791646	30	2.0	29	83	10	73	29	18	1	50	1.57
10796329--10796358	12	2.4	13	94	5	53	0	30	3	66	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10796723--10796753	15	2.1	14	94	5	53	54	6	3	35	1.42
10796740--10796808	21	3.4	20	67	16	61	55	8	1	34	1.40
10804425--10804485	31	2.0	31	84	9	81	34	8	24	32	1.85
10804911--10805081	47	3.7	47	77	12	172	22	18	27	30	1.97
10806563--10806635	35	2.1	35	100	0	146	39	19	5	35	1.75
10810211--10810240	12	2.4	13	94	5	53	0	30	3	66	1.07
10810258--10810290	13	2.4	14	85	15	50	0	12	15	72	1.12
10810605--10810635	15	2.1	14	94	5	53	54	6	3	35	1.42
10810622--10810690	21	3.4	20	71	16	70	55	7	1	36	1.37
10818241--10818313	35	2.1	35	94	0	128	35	17	21	24	1.95
10819479--10819541	29	2.2	27	78	10	63	58	1	11	28	1.41
10819533--10819588	28	2.0	27	82	6	67	57	3	8	30	1.47
10819574--10819650	26	2.9	26	78	7	66	50	3	18	27	1.64
10819603--10819707	26	4.0	25	73	9	75	55	1	11	31	1.46
10819812--10819893	27	3.3	23	76	14	76	57	3	8	30	1.46
10821156--10821219	29	2.1	31	83	11	80	3	15	12	68	1.32
10822336--10822365	14	2.1	15	93	6	53	60	0	0	40	0.97
10822510--10822698	100	1.9	101	91	3	310	40	7	16	35	1.77
10823083--10823114	15	2.1	15	100	0	64	28	6	25	40	1.79
10825035--10825071	19	2.1	18	90	10	58	62	0	2	35	1.10
10825065--10825090	7	3.7	7	100	0	52	57	0	0	42	0.98
10827810--10827946	3	44.3	3	72	15	59	64	3	5	27	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10828060--10828190	3	44.3	3	86	3	167	60	0	6	32	1.27
10828279--10828343	7	9.1	7	74	12	53	63	1	3	32	1.19
10829019--10829072	25	2.2	25	89	0	81	18	29	29	22	1.97
10829922--10829965	21	2.1	21	83	8	54	59	0	2	38	1.10
10829922--10829965	11	4.2	11	85	5	56	59	0	2	38	1.10
10831308--10831383	25	3.0	25	82	3	98	56	0	2	40	1.13
10832347--10832385	13	3.0	13	92	0	60	48	10	0	41	1.37
10832607--10832661	26	2.2	25	83	9	67	58	0	9	32	1.30
10837272--10837312	21	2.0	21	90	0	64	19	29	21	29	1.98
10841750--10841835	43	2.0	43	100	0	172	34	41	4	18	1.71
10846846--10846984	52	2.6	53	80	3	156	24	18	27	29	1.98
10848773--10848950	3	60.3	3	72	15	97	30	4	1	64	1.21
10850164--10850202	20	1.9	21	94	5	71	53	0	0	46	1.00
10850164--10850205	11	4.0	11	78	12	52	52	0	0	47	1.00
10850967--10851028	22	2.6	24	78	17	67	54	4	0	40	1.22
10858188--10858276	42	2.1	42	93	0	151	51	12	5	30	1.62
10858300--10858339	19	2.2	18	95	4	71	42	15	2	40	1.60
10862137--10862225	42	2.1	42	93	0	151	51	12	5	30	1.62
10862250--10862289	19	2.2	18	90	4	62	42	15	5	37	1.68
10862298--10862326	15	1.9	15	100	0	58	44	20	0	34	1.52
10863945--10864001	29	2.0	29	85	0	78	35	0	3	61	1.13
10870738--10870779	16	2.6	16	92	3	66	45	4	16	33	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10878945--10878995	25	2.0	26	85	11	70	25	3	0	70	1.04
10879443--10879474	9	3.4	9	95	4	55	40	0	0	59	0.97
10879442--10879475	10	3.5	10	92	8	52	41	0	0	58	0.98
10879454--10879495	15	2.6	16	81	7	50	54	0	0	45	0.99
10880677--10880711	18	2.0	18	94	5	63	40	0	0	60	0.97
10883669--10883712	19	2.3	19	84	7	54	29	4	2	63	1.26
10887819--10887845	14	1.9	14	100	0	54	37	0	0	62	0.95
10892713--10892775	31	2.0	31	100	0	126	36	6	22	34	1.80
10892944--10893020	35	2.2	35	84	11	97	42	5	10	41	1.61
10899924--10900017	47	2.0	47	89	0	143	40	15	7	36	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345