genome.fa.s12.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  195  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55564558--55564596	15	2.7	14	84	7	60	56	0	0	43	0.99
55564560--55564594	15	2.3	15	95	0	61	62	0	0	37	0.95
55566507--55566560	22	2.3	24	78	15	60	35	3	7	53	1.47
55571094--55571132	20	2.0	20	85	10	53	28	2	2	66	1.18
55572300--55572380	40	2.0	40	100	0	162	24	2	19	53	1.58
55575720--55575756	18	2.1	18	89	0	56	54	13	16	16	1.72
55588992--55589470	48	10.0	48	83	0	517	26	16	28	28	1.97
55588994--55589471	96	5.0	96	87	0	614	26	16	28	28	1.97
55593363--55593589	41	5.5	41	86	5	268	32	22	22	22	1.98
55593347--55593589	83	3.0	81	83	5	292	32	21	23	22	1.98
55593362--55593589	124	1.8	123	86	4	334	32	21	22	23	1.98
55593893--55593929	15	2.5	15	90	0	56	18	0	35	45	1.50
55594473--55594506	2	17.5	2	93	6	61	50	0	0	50	1.00
55594761--55594794	18	1.9	18	88	5	52	50	2	2	44	1.32
55597011--55597101	37	2.4	37	92	1	155	24	32	18	24	1.97
55597197--55597513	49	6.5	49	96	0	571	29	31	8	29	1.88
55600652--55600802	81	1.9	81	83	5	198	22	9	21	46	1.80
55603759--55603820	19	3.3	19	79	2	63	24	1	3	70	1.10
55603757--55603827	25	2.8	24	78	14	72	25	1	2	70	1.09
55603759--55603827	6	11.2	6	73	11	50	24	1	2	71	1.09
55603900--55603940	16	2.6	16	88	11	59	24	0	0	75	0.80
55603899--55603940	22	2.0	21	90	4	66	26	0	0	73	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55605607--55605640	17	1.9	18	88	5	52	38	0	17	44	1.49
55606009--55606125	43	2.7	43	86	1	155	18	19	31	29	1.96
55609713--55609785	29	2.5	29	90	0	92	24	31	16	27	1.96
55610959--55611015	25	2.3	24	84	6	69	7	15	1	75	1.10
55618810--55618882	29	2.5	29	90	0	92	24	31	16	27	1.96
55620053--55620108	24	2.3	24	84	9	69	7	16	1	75	1.11
55626703--55626775	29	2.5	29	90	0	92	24	31	16	27	1.96
55632922--55634128	605	2.0	605	97	0	2270	31	15	24	28	1.96
55639617--55639731	29	4.0	29	80	6	119	27	28	16	26	1.97
55639608--55639718	58	1.9	57	85	1	150	27	29	17	26	1.97
55641408--55641577	46	3.7	46	75	10	175	22	17	28	31	1.97
55641402--55641572	93	1.8	93	91	0	279	21	18	29	30	1.97
55647686--55647983	84	3.5	85	84	4	347	24	16	27	31	1.96
55647686--55647987	43	7.1	43	75	10	291	24	15	28	31	1.96
55648166--55648209	18	2.3	18	84	7	52	50	2	13	34	1.55
55653737--55653934	43	4.6	42	75	12	179	25	16	27	31	1.96
55654107--55654147	18	2.2	20	86	8	59	46	4	17	31	1.69
55661254--55661422	41	4.2	40	76	14	175	28	26	21	23	1.99
55666974--55666999	3	8.7	3	100	0	52	69	0	0	30	0.89
55674952--55675050	28	3.5	29	83	6	114	30	27	15	27	1.96
55675082--55675142	29	2.1	29	100	0	122	42	31	9	16	1.81
55682995--55683093	28	3.5	29	83	6	114	30	27	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55685443--55685657	49	4.4	49	95	0	358	28	9	33	28	1.88
55685766--55685843	37	2.1	37	97	0	147	26	19	32	21	1.97
55694070--55694231	42	3.8	42	79	1	171	29	23	17	29	1.97
55699171--55699270	23	4.4	23	72	16	91	34	16	20	30	1.94
55699165--55699271	45	2.4	45	84	7	128	34	15	19	29	1.93
55700183--55700234	25	2.0	27	92	7	90	42	19	3	34	1.69
55705445--55705470	12	2.2	12	100	0	52	30	19	15	34	1.93
55709750--55709827	37	2.1	37	92	0	129	19	32	19	29	1.96
55709936--55710022	49	1.9	42	97	0	102	31	29	8	31	1.86
55709999--55710040	18	2.3	18	100	0	84	38	28	0	33	1.58
55709950--55710089	67	2.1	67	98	0	271	32	30	5	30	1.81
55710027--55710219	47	4.1	47	91	4	289	29	32	8	29	1.87
55713761--55713892	29	4.6	29	98	0	246	26	32	15	25	1.95
55713761--55713924	87	1.9	87	86	5	233	26	31	16	25	1.96
55715982--55716067	37	2.3	37	91	0	145	20	33	19	25	1.97
55716167--55716383	47	4.5	47	89	5	310	29	31	9	29	1.88
55719887--55719966	42	1.9	42	94	0	142	38	13	10	37	1.79
55719888--55719956	22	3.2	22	64	15	63	40	11	8	39	1.72
55719886--55719976	42	2.2	42	85	0	128	39	16	8	35	1.80
55723400--55723501	42	2.4	43	88	6	145	32	25	17	24	1.97
55723380--55723501	43	2.8	43	83	9	151	32	25	18	23	1.97
55725113--55725216	23	4.6	23	76	7	104	35	18	20	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55725111--55725211	45	2.2	45	84	5	123	36	16	21	24	1.94
55728825--55728894	27	2.5	28	93	2	115	30	14	25	30	1.95
55728849--55728906	27	2.1	27	87	0	80	32	15	20	31	1.94
55731068--55731248	39	4.6	39	88	2	247	24	21	30	23	1.99
55731068--55731248	77	2.3	79	87	2	249	24	21	30	23	1.99
55735406--55735508	29	3.6	29	80	2	109	21	17	33	28	1.96
55744324--55744393	27	2.5	28	95	2	124	28	14	27	30	1.95
55744324--55744405	27	3.0	27	85	8	78	29	15	24	30	1.96
55749692--55749716	13	1.9	13	100	0	50	32	4	24	40	1.73
55750871--55750967	43	2.3	43	80	5	108	29	17	23	28	1.97
55750811--55750967	43	3.7	42	71	12	106	29	16	23	29	1.96
55751691--55751740	24	2.2	24	86	10	70	28	6	22	44	1.76
55757168--55757309	40	3.5	40	82	1	124	27	24	26	21	1.99
55757206--55757335	40	3.3	39	78	11	147	23	24	26	24	2.00
55761350--55761401	25	2.1	24	92	3	86	19	36	1	42	1.62
55762301--55762369	34	2.0	34	100	0	138	46	23	14	15	1.83
55776006--55776075	27	2.6	27	95	2	122	30	27	14	28	1.95
55784035--55784104	27	2.6	27	95	2	122	30	27	14	28	1.95
55787590--55787788	38	5.3	38	85	4	269	33	24	21	21	1.97
55787590--55787788	75	2.6	76	88	2	303	33	24	21	21	1.97
55794811--55794923	40	2.8	40	85	1	138	26	31	21	20	1.98
55802690--55802852	39	4.2	39	91	0	263	23	33	20	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55806071--55806212	27	5.2	26	86	7	194	16	23	24	35	1.95
55806071--55806212	54	2.6	54	96	1	257	16	23	24	35	1.95
55809233--55809264	14	2.3	14	94	0	55	31	0	9	59	1.29
55808853--55809336	241	2.0	237	91	6	787	31	13	16	37	1.88
55811260--55811337	20	4.0	20	74	12	72	61	2	1	34	1.18
55811245--55811348	29	3.6	28	74	14	88	62	1	0	34	1.13
55811265--55811346	10	8.3	10	70	12	62	63	2	1	32	1.15
55811292--55811357	29	2.2	29	86	7	89	63	3	1	31	1.19
55811244--55811359	19	6.2	19	71	17	73	62	2	1	32	1.19
55811632--55811705	10	7.8	10	70	15	50	33	1	1	63	1.11
55821257--55821323	33	2.0	33	82	5	82	56	0	1	41	1.08
55825458--55825514	26	2.1	27	96	3	107	49	0	1	49	1.11
55825576--55825614	14	2.9	14	84	3	53	53	0	0	46	1.00
55825582--55825617	8	4.4	8	92	3	54	52	0	0	47	1.00
55825643--55825699	21	2.7	22	76	10	57	29	7	0	63	1.21
55836632--55836709	39	2.0	39	97	0	147	38	24	0	37	1.56
55840762--55840904	57	2.5	57	85	1	171	37	19	1	41	1.60
55840762--55840919	56	2.8	57	83	0	156	36	20	1	41	1.61
55841312--55841390	38	2.1	38	100	0	158	32	26	0	40	1.56
55843049--55843216	40	4.2	40	80	12	175	23	22	27	26	1.99
55843049--55843216	80	2.1	79	86	4	230	23	22	27	26	1.99
55851054--55851221	40	4.2	40	80	12	175	23	22	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55851054--55851221	80	2.1	79	86	4	230	23	22	27	26	1.99
55856082--55856231	40	3.8	40	83	5	169	29	22	25	23	1.99
55856078--55856265	40	4.8	38	77	9	155	28	22	25	23	1.99
55858547--55858577	5	6.2	5	92	0	53	41	22	0	35	1.54
55861440--55861525	43	2.0	43	88	8	131	53	1	22	23	1.53
55861500--55861540	19	2.2	19	86	4	57	53	0	19	26	1.45
55862794--55862843	15	3.0	15	76	23	55	32	0	10	58	1.31
55864315--55864636	118	2.7	118	90	1	493	41	13	13	31	1.84
55867340--55867377	18	2.2	17	95	4	67	92	7	0	0	0.40
55867340--55867378	11	3.6	11	93	3	62	89	10	0	0	0.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345