genome.fa.s12.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  182  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51633615--51633818	53	3.9	53	77	10	188	36	15	24	23	1.94
51633902--51633950	23	2.1	24	88	3	73	48	10	20	20	1.78
51644175--51644229	27	2.2	24	77	22	60	32	29	12	25	1.93
51644180--51644239	28	2.2	28	96	3	113	31	25	13	30	1.93
51652243--51652312	27	2.6	27	97	2	131	31	27	12	28	1.93
51653942--51654070	53	2.4	55	84	2	172	34	16	26	23	1.95
51658305--51658550	40	6.2	40	90	2	356	23	20	29	26	1.99
51673930--51674114	40	4.6	40	80	5	180	22	27	23	26	2.00
51673933--51674114	80	2.3	80	79	11	203	21	27	24	26	1.99
51681887--51682070	40	4.6	39	79	6	167	22	27	23	26	2.00
51681885--51682070	79	2.3	80	80	10	211	23	27	23	26	2.00
51688901--51689017	46	2.5	46	86	5	146	22	31	18	27	1.97
51703083--51703254	93	1.8	93	94	0	308	27	30	21	20	1.98
51703075--51703250	46	3.8	46	81	10	214	28	29	21	21	1.98
51709676--51709740	25	2.6	25	87	0	85	49	10	18	21	1.78
51709965--51709994	2	15.0	2	92	0	51	3	0	46	50	1.18
51710244--51710777	27	19.2	27	79	6	467	41	8	21	28	1.81
51710244--51710777	54	10.1	54	83	5	642	41	8	21	28	1.81
51710244--51710777	81	6.7	81	82	5	633	41	8	21	28	1.81
51712377--51712413	16	2.3	16	90	0	56	48	16	21	13	1.80
51712624--51712737	29	4.0	29	80	6	126	28	14	28	29	1.95
51712636--51712745	58	1.9	58	86	1	159	27	15	29	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51716488--51716573	27	3.2	26	83	6	84	43	17	9	30	1.80
51716524--51716779	27	9.5	27	83	5	254	39	21	10	28	1.86
51716540--51716774	81	2.9	81	85	2	303	40	20	10	28	1.85
51716809--51716921	54	2.1	53	86	4	163	35	15	21	27	1.94
51716818--51716925	27	4.0	27	85	0	135	33	18	22	25	1.97
51717662--51717742	27	3.0	26	89	5	126	16	22	23	38	1.93
51717911--51718059	6	24.3	6	73	14	117	18	18	14	48	1.81
51717889--51717996	31	3.5	31	69	14	96	20	20	13	45	1.85
51717861--51718038	25	7.7	25	69	21	102	19	20	14	45	1.85
51717861--51718002	62	2.3	62	88	0	221	20	20	14	44	1.86
51717951--51718059	49	2.2	49	88	3	157	17	18	15	48	1.81
51717896--51718050	37	4.2	37	76	9	154	18	20	13	47	1.82
51720842--51720902	30	2.0	30	87	0	86	32	21	6	39	1.79
51724530--51724659	40	3.3	39	76	8	136	23	27	23	24	2.00
51724546--51724693	40	3.7	40	77	7	140	21	27	24	27	1.99
51724546--51724693	80	1.9	80	83	8	194	21	27	24	27	1.99
51726796--51726872	29	2.7	29	87	0	109	24	16	28	29	1.97
51734226--51734355	40	3.2	40	81	2	163	23	23	28	24	2.00
51736306--51736428	46	2.6	47	83	8	153	23	30	19	26	1.98
51736400--51736521	47	2.7	46	84	2	165	25	26	19	28	1.99
51743128--51743160	16	2.0	17	94	5	59	24	6	30	39	1.79
51745510--51745581	29	2.5	29	86	4	92	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51748395--51748458	20	3.2	21	86	8	89	9	32	21	35	1.86
51750551--51750607	29	2.0	29	92	0	96	40	10	14	35	1.80
51751094--51751314	46	4.7	46	73	14	141	27	20	29	22	1.98
51752700--51752867	40	4.2	40	79	1	167	23	26	23	26	2.00
51752715--51752865	80	1.9	80	83	8	200	22	26	23	27	2.00
51754074--51754199	55	2.3	56	98	1	245	29	16	21	32	1.95
51764322--51764543	47	4.8	46	76	14	172	27	19	28	23	1.98
51764375--51764543	45	3.6	46	81	10	166	27	19	30	23	1.98
51776475--51776589	46	2.5	44	84	9	144	24	26	18	30	1.98
51779187--51779298	56	2.0	56	96	0	206	25	23	14	37	1.92
51784599--51784805	53	3.8	53	75	1	153	21	24	16	37	1.93
51784904--51784937	13	2.6	13	95	0	59	58	5	5	29	1.45
51792053--51792259	53	3.8	54	75	4	193	20	23	17	38	1.93
51794061--51794268	40	5.2	40	84	0	218	25	22	25	25	2.00
51794062--51794268	80	2.6	80	83	4	247	25	22	26	25	2.00
51802219--51802426	40	5.2	40	84	0	218	25	22	25	25	2.00
51802220--51802426	80	2.6	80	83	4	247	25	22	26	25	2.00
51811664--51811834	46	3.7	45	80	12	161	25	29	18	26	1.98
51817352--51817445	48	2.0	48	86	0	134	27	19	29	23	1.98
51818731--51818816	28	3.0	28	84	3	109	29	29	13	27	1.95
51819032--51819071	16	2.5	16	87	0	53	12	25	17	45	1.83
51819026--51819078	24	2.3	23	84	12	72	9	22	18	49	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51819043--51819077	16	2.2	16	94	0	61	8	22	17	51	1.72
51822973--51823151	41	4.3	41	91	5	281	36	25	20	17	1.94
51822973--51823151	84	2.2	82	90	6	281	36	25	20	17	1.94
51827173--51827335	46	3.5	46	75	14	172	28	30	20	20	1.98
51828628--51828803	46	3.8	46	81	10	232	20	21	29	28	1.98
51828624--51828795	93	1.8	93	96	0	317	20	22	30	27	1.98
51831757--51831825	15	4.6	15	83	0	84	11	17	13	57	1.64
51831748--51831835	30	3.0	30	81	8	99	10	17	15	56	1.66
51834221--51834396	46	3.8	46	81	10	232	20	21	29	28	1.98
51834217--51834388	93	1.8	93	96	0	317	20	22	30	27	1.98
51838110--51838189	30	2.7	30	78	7	90	55	12	17	15	1.70
51838110--51838180	15	4.7	15	79	6	81	56	9	18	15	1.66
51838112--51838189	15	5.2	15	76	6	70	55	12	16	15	1.70
51841784--51841968	40	4.6	40	80	5	180	26	23	27	22	2.00
51841784--51841971	80	2.3	80	79	12	206	26	23	27	22	2.00
51849755--51849939	40	4.6	40	80	5	180	26	23	27	22	2.00
51849755--51849942	80	2.3	80	79	12	206	26	23	27	22	2.00
51852253--51852427	93	1.9	93	90	0	278	28	28	20	22	1.99
51852246--51852421	46	3.8	46	74	12	171	28	28	20	22	1.98
51854751--51854916	48	3.5	48	80	8	187	24	27	17	30	1.97
51869912--51870224	49	6.4	49	96	0	545	28	8	33	29	1.87
51870332--51870393	21	3.2	21	60	21	53	27	19	33	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51870327--51870410	37	2.3	37	95	0	150	25	19	34	21	1.96
51871918--51872052	46	3.0	46	83	5	161	25	28	17	28	1.98
51873476--51873522	10	4.4	10	82	15	58	51	27	4	17	1.64
51873480--51873522	23	1.9	22	90	4	68	51	27	4	16	1.64
51884157--51884249	33	2.8	32	76	12	84	29	25	19	25	1.99
51884559--51884611	26	2.0	26	82	7	63	26	15	20	37	1.92
51890359--51891165	402	2.0	402	97	0	1524	22	34	19	23	1.96
51892837--51892889	26	2.0	27	85	7	74	24	15	22	37	1.92
51898706--51898754	8	6.4	8	86	9	75	14	0	0	85	0.59
51898706--51898754	15	3.2	16	88	8	75	14	0	0	85	0.59
51908151--51908204	24	2.4	22	85	11	81	25	24	16	33	1.96
51926898--51926948	24	2.1	24	92	0	84	19	41	17	21	1.91
51926907--51926960	24	2.2	24	90	0	81	22	37	20	20	1.95
51932712--51932753	21	2.0	21	100	0	84	42	14	14	28	1.84
51938119--51938294	46	3.8	46	79	10	205	21	21	28	28	1.98
51938116--51938287	93	1.8	93	93	0	299	21	22	29	27	1.99
51939863--51939922	12	5.0	12	71	15	52	38	31	13	16	1.87
51939835--51939933	24	4.1	24	85	0	117	37	31	13	18	1.89
51942772--51942841	27	2.6	27	95	2	122	30	27	14	28	1.95
51950801--51950870	27	2.6	27	95	2	122	30	27	14	28	1.95
51953526--51953554	12	2.3	13	94	5	51	48	27	3	20	1.66
51959135--51959169	11	3.1	11	87	4	52	34	31	0	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51968085--51968117	11	3.0	11	100	0	66	36	0	36	27	1.57
51970449--51970551	29	3.6	29	87	0	143	26	15	33	25	1.95
51978481--51978583	29	3.6	29	87	0	143	26	15	33	25	1.95
51982133--51982179	17	2.8	17	100	0	94	31	10	19	38	1.86
51993862--51993922	27	2.3	27	94	0	104	31	39	19	9	1.84
51994098--51994208	56	2.0	56	96	0	204	41	27	3	27	1.72
51998106--51998264	43	3.7	42	75	15	148	31	23	18	25	1.98
51998115--51998265	44	3.6	41	77	10	135	31	23	19	26	1.98
52004958--52005124	40	4.2	40	82	2	185	24	26	22	26	2.00
52012965--52013131	40	4.2	40	82	2	176	25	26	22	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345