genome.fa.s12.2.7.7.80.10.50.1000.312.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  312  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93696181--93696461	77	3.7	77	91	3	421	25	18	20	35	1.95
93696484--93696527	14	3.3	13	81	12	54	15	11	6	65	1.44
93696497--93696535	14	2.7	14	84	4	51	15	12	5	66	1.41
93697294--93697394	30	3.4	30	91	0	166	27	48	3	19	1.67
93697294--93697438	30	4.8	29	83	5	155	26	46	4	22	1.70
93697294--93697417	60	2.1	60	87	0	176	26	46	4	22	1.69
93698004--93698076	2	38.5	2	74	15	57	39	2	1	56	1.22
93698111--93698159	25	2.0	25	91	0	80	34	8	6	51	1.57
93698313--93698360	16	3.1	15	90	6	69	31	2	2	64	1.16
93698313--93698364	8	6.5	8	82	8	61	30	1	1	65	1.14
93703769--93703802	15	2.4	14	90	5	50	20	11	5	61	1.50
93713005--93713051	23	1.9	26	83	12	64	46	0	8	44	1.33
93715004--93715065	26	2.3	26	83	8	72	35	27	9	27	1.88
93716767--93716808	22	1.9	22	90	9	68	33	19	28	19	1.96
93718288--93718328	3	13.7	3	100	0	82	65	0	0	34	0.93
93725877--93725915	3	13.0	3	94	0	51	58	0	33	7	1.26
93728664--93728746	41	2.0	41	95	0	148	31	13	15	39	1.86
93728882--93728927	23	2.0	24	82	4	58	41	8	0	50	1.33
93730213--93730243	2	15.5	2	100	0	62	48	0	0	51	1.00
93730402--93730467	31	2.2	30	83	2	78	21	10	9	59	1.58
93731040--93731079	18	2.2	18	86	0	53	25	0	10	65	1.24
93731058--93731104	11	4.3	11	78	8	51	19	0	10	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93731466--93731510	19	2.4	19	77	11	56	64	2	4	28	1.25
93733307--93733348	21	2.0	21	86	9	59	28	9	16	45	1.79
93734748--93734841	43	2.2	43	90	3	145	23	15	19	41	1.90
93742028--93742195	35	4.6	35	75	13	167	30	17	14	37	1.90
93742050--93742350	43	7.4	41	82	9	261	29	17	15	37	1.90
93742028--93742239	113	1.9	113	94	0	379	29	16	16	37	1.91
93742163--93742350	86	2.2	86	91	3	299	29	18	14	37	1.91
93743478--93743515	12	3.1	13	85	11	53	44	0	0	55	0.99
93743482--93743516	18	1.9	18	94	0	61	42	0	0	57	0.99
93747429--93747471	21	2.0	21	90	0	68	25	11	23	39	1.88
93747787--93747845	18	3.2	17	81	15	57	54	5	0	40	1.23
93748131--93748167	19	1.9	19	88	0	56	64	8	2	24	1.34
93749705--93749825	64	1.9	64	84	3	163	28	13	24	33	1.93
93757383--93757421	18	2.2	18	85	0	51	35	0	33	30	1.58
93758373--93758416	13	3.2	14	81	15	56	59	0	0	40	0.98
93761903--93761936	18	1.9	18	88	5	52	11	29	0	58	1.33
93778395--93778473	39	2.0	39	97	0	149	30	17	3	48	1.65
93779137--93779217	3	27.0	3	100	0	162	33	0	0	66	0.92
93781672--93781820	73	2.0	73	93	0	253	42	18	4	34	1.72
93782871--93782985	42	2.8	41	76	7	106	40	12	24	22	1.88
93782962--93783012	20	2.5	20	81	9	59	49	15	17	17	1.81
93783443--93783520	36	2.2	36	97	2	149	28	24	5	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93784902--93784999	45	2.2	44	83	5	117	23	23	17	35	1.95
93785671--93785759	44	2.0	44	100	0	178	33	16	13	35	1.88
93800880--93800923	19	2.4	19	80	3	54	20	6	2	70	1.21
93802426--93802498	6	11.5	6	78	11	74	13	4	4	78	1.05
93802440--93802478	19	2.1	19	95	0	69	15	0	2	82	0.79
93811976--93812039	21	3.2	19	82	12	65	26	14	9	50	1.73
93811989--93812034	21	2.2	21	88	7	67	23	13	6	56	1.60
93812001--93812077	21	3.7	21	76	13	70	24	14	11	49	1.76
93812064--93812109	19	2.3	20	81	3	58	23	15	4	56	1.57
93812369--93812419	20	2.6	19	82	14	59	19	13	5	60	1.53
93812803--93812868	20	3.3	20	74	4	62	21	21	6	51	1.69
93812850--93812950	41	2.5	42	81	10	104	28	17	7	45	1.77
93814021--93814120	50	2.0	49	92	1	164	31	22	17	30	1.96
93816182--93816228	20	2.3	21	88	3	69	21	14	4	59	1.52
93816182--93816248	21	3.2	21	78	4	64	25	19	2	52	1.60
93816285--93816329	20	2.2	21	84	4	56	24	15	8	51	1.72
93818480--93818548	26	2.6	26	78	15	63	53	10	1	34	1.44
93823276--93823309	4	8.5	4	100	0	68	26	0	23	50	1.50
93824665--93824711	15	3.2	15	81	3	51	61	4	12	21	1.48
93824807--93824847	20	2.0	21	85	9	57	36	7	0	56	1.27
93825944--93825976	13	2.3	15	90	10	52	45	0	6	48	1.27
93830948--93831000	17	3.1	18	74	17	58	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93830991--93831328	58	5.9	58	77	4	281	25	23	23	28	1.99
93830991--93831328	29	11.8	29	73	2	243	25	23	23	28	1.99
93831462--93831507	22	2.1	22	91	0	74	34	23	13	28	1.92
93831465--93831515	22	2.3	22	86	0	66	39	25	9	25	1.86
93831606--93831644	15	2.6	15	87	0	60	15	23	33	28	1.95
93832760--93832784	2	12.5	2	100	0	50	48	0	0	52	1.00
93837046--93837070	2	12.5	2	100	0	50	52	0	48	0	1.00
93838865--93838889	12	2.1	12	100	0	50	52	0	8	40	1.31
93853027--93853068	17	2.4	18	80	4	50	59	0	2	38	1.10
93853127--93853159	2	16.5	2	100	0	66	51	0	0	48	1.00
93854314--93854358	21	2.2	21	84	4	56	57	6	15	20	1.60
93854321--93854360	21	1.9	21	89	0	62	57	7	15	20	1.61
93857211--93857242	14	2.4	13	90	10	55	62	12	6	18	1.50
93857786--93857829	21	2.2	19	84	8	52	4	22	18	54	1.61
93862420--93862455	5	7.6	5	87	12	58	19	0	0	80	0.71
93862420--93862455	9	3.9	9	96	3	63	19	0	0	80	0.71
93862420--93862455	14	2.5	15	86	13	58	19	0	0	80	0.71
93866862--93866893	5	6.6	5	92	7	57	18	0	0	81	0.70
93866862--93866892	9	3.3	9	91	8	53	19	0	0	80	0.71
93877416--93877456	20	2.0	21	85	4	57	65	2	21	9	1.34
93885387--93885424	20	1.9	19	89	5	58	18	18	39	23	1.92
93886390--93886430	19	2.0	20	86	9	57	41	9	7	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93887232--93887287	24	2.3	23	79	8	67	60	7	5	26	1.44
93897948--93897995	19	2.5	20	86	6	64	45	4	18	31	1.68
93901901--93901952	21	2.4	21	81	18	70	69	7	0	23	1.14
93904315--93904362	21	2.4	21	86	13	66	39	10	2	47	1.49
93916287--93916344	24	2.4	25	77	13	68	56	0	0	43	0.99
93916647--93916687	22	1.9	22	85	5	57	39	0	4	56	1.21
93921558--93921585	10	2.8	10	100	0	56	50	0	0	50	1.00
93922940--93923141	35	5.6	35	85	6	246	35	24	9	31	1.87
93930430--93930663	117	2.0	117	90	1	371	36	11	17	34	1.86
93930800--93930979	98	1.8	98	85	3	254	32	11	15	40	1.84
93932654--93932688	18	1.9	18	88	0	52	34	0	2	62	1.10
93939252--93939281	13	2.3	13	94	0	51	0	0	63	36	0.95
93939579--93939629	21	2.3	22	76	10	59	35	0	1	62	1.06
93940635--93940677	17	2.4	17	84	7	59	46	0	4	48	1.22
93941868--93941905	20	1.9	19	89	5	58	28	23	13	34	1.92
93943469--93943517	20	2.3	21	82	10	64	46	20	22	10	1.80
93947182--93947244	22	2.9	21	83	6	72	31	15	19	33	1.93
93947189--93947246	22	2.6	22	86	5	73	29	17	18	34	1.94
93951475--93951584	47	2.4	47	76	13	120	37	21	14	26	1.92
93952351--93952447	42	2.3	43	87	7	146	7	26	7	58	1.51
93954836--93954868	5	6.6	5	92	0	57	78	0	0	21	0.75
93957273--93957317	23	2.0	23	86	0	63	57	0	4	37	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93957272--93957325	23	2.5	21	72	13	56	59	0	5	35	1.21
93960798--93960973	50	3.5	49	83	7	203	28	27	18	25	1.98
93960798--93960984	101	1.9	99	87	4	277	27	28	18	25	1.98
93964499--93964558	30	2.0	30	90	0	93	30	25	8	36	1.85
93970468--93970502	18	2.0	18	88	5	54	25	11	5	57	1.56
93971177--93971339	42	3.8	42	82	2	191	32	17	23	26	1.96
93972695--93972826	29	4.6	29	99	0	255	20	31	28	20	1.97
93973928--93973972	16	2.8	16	86	6	65	17	24	26	31	1.97
93976788--93976848	32	1.9	32	96	0	113	29	26	24	19	1.99
93977750--93977786	2	18.5	2	94	0	65	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345