Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  314  of  345  ( 41379 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94283858--94283882
10
2.5
10
100
0
50
48
24
8
20
1.76
94292715--94292857
72
2.0
72
88
0
214
38
18
25
17
1.92
94317577--94318354
132
5.9
132
92
0
1245
28
17
24
29
1.97
94317721--94318317
45
13.5
45
67
13
265
28
16
25
29
1.97
94317807--94318271
44
10.6
44
64
14
163
27
16
25
30
1.96
94317634--94318276
87
7.3
87
66
9
257
28
16
25
29
1.97
94321337--94321588
131
1.9
131
83
3
328
27
21
18
32
1.97
94323246--94323292
24
2.0
24
83
4
60
59
8
2
29
1.39
94339251--94339392
44
3.2
44
66
15
121
34
16
25
23
1.95
94339238--94340156
88
10.5
87
86
3
1186
34
21
22
21
1.97
94339295--94339436
44
3.2
44
65
11
110
33
17
26
22
1.96
94339605--94339743
44
3.2
43
67
16
106
35
20
22
22
1.96
94339736--94340135
44
9.1
44
63
14
162
35
22
22
20
1.96
94346253--94346611
179
2.0
179
87
3
517
48
7
10
34
1.65
94350876--94350924
7
6.4
7
78
17
53
65
4
0
30
1.11
94350876--94350929
25
2.2
25
77
12
67
66
3
0
29
1.09
94353951--94353986
17
2.1
17
94
0
63
38
13
19
27
1.90
94356268--94356326
30
2.0
30
86
6
84
18
11
49
20
1.79
94357168--94357207
11
3.8
11
80
12
57
25
0
0
75
0.81
94357174--94357207
10
3.6
9
88
11
50
20
0
0
79
0.73
94357173--94357221
20
2.4
20
86
3
62
24
0
2
73
0.94
94360814--94360887
33
2.3
33
81
4
98
48
18
18
13
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94360801--94360887
33
2.7
31
78
3
93
47
18
19
14
1.83
94362466--94362506
20
2.2
20
91
8
68
39
7
4
48
1.52
94362548--94362851
150
2.0
148
81
6
355
34
10
3
51
1.53
94364081--94364362
130
2.2
130
81
3
352
32
17
16
34
1.92
94364081--94364399
130
2.5
130
78
7
351
32
17
16
33
1.93
94368939--94369019
24
3.4
24
68
13
76
13
14
53
18
1.73
94368940--94369064
48
2.6
48
92
0
214
12
15
53
18
1.72
94368956--94369043
24
3.7
24
69
11
72
9
19
53
18
1.70
94375528--94375564
2
18.5
2
94
0
65
48
0
2
48
1.15
94376308--94377523
179
6.8
179
83
5
1228
30
17
19
32
1.95
94376308--94377523
268
4.5
268
76
6
1208
30
17
19
32
1.95
94376357--94377500
44
25.6
46
67
9
263
30
17
19
32
1.95
94377506--94377679
46
3.8
46
88
3
235
26
23
16
33
1.95
94378173--94378263
27
3.5
26
68
25
75
54
6
16
21
1.64
94378120--94378274
53
2.9
53
92
0
238
57
7
13
21
1.60
94382021--94382065
19
2.3
20
88
7
67
42
13
22
22
1.88
94391007--94391036
15
2.0
15
100
0
60
46
6
13
33
1.69
94399697--94399726
15
2.0
15
93
0
51
53
6
23
16
1.66
94400592--94400631
6
6.8
6
88
5
64
80
0
2
17
0.83
94400592--94400627
11
3.2
11
92
7
63
80
0
2
16
0.83
94402191--94402239
3
16.3
3
100
0
98
67
0
0
32
0.91
94424994--94425027
17
2.0
18
88
11
54
44
0
14
41
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94427337--94427384
25
1.9
25
82
0
60
27
10
18
43
1.82
94427946--94428001
27
2.1
27
100
0
112
35
7
19
37
1.79
94428544--94428590
5
9.0
5
81
9
58
0
34
57
8
1.29
94428544--94428590
11
4.5
10
79
10
58
0
34
57
8
1.29
94428548--94428590
16
2.7
16
100
0
86
0
34
55
9
1.32
94428745--94428792
25
2.0
25
88
12
73
64
6
0
29
1.18
94428733--94428821
21
4.1
21
73
17
65
69
6
0
23
1.12
94428867--94428899
15
2.1
16
88
11
50
69
0
0
30
0.88
94429221--94429264
17
2.6
17
82
7
54
31
15
6
45
1.73
94429396--94429439
16
2.8
16
89
0
61
15
9
11
63
1.51
94433738--94433790
25
2.1
25
82
6
63
56
7
3
32
1.45
94433751--94433803
25
2.2
24
83
10
63
58
9
0
32
1.30
94434486--94434510
6
4.2
6
100
0
50
0
52
48
0
1.00
94434554--94434592
20
2.0
19
85
5
51
30
0
2
66
1.05
94435040--94435111
16
4.5
16
80
16
78
9
1
41
47
1.45
94435048--94435113
32
2.0
34
88
11
102
7
1
43
46
1.41
94435794--94436043
74
3.4
73
79
10
280
29
21
17
32
1.96
94435982--94436275
160
1.8
161
93
0
509
30
22
16
30
1.96
94436142--94436275
71
1.9
71
90
0
214
30
23
15
29
1.96
94436173--94436531
127
2.8
127
95
0
641
32
22
16
29
1.95
94436425--94436601
72
2.4
72
92
0
291
28
25
17
28
1.97
94443300--94443366
16
4.1
16
80
17
84
8
0
43
47
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94444052--94444301
74
3.4
73
79
10
280
29
21
17
32
1.96
94444047--94444373
71
4.5
72
79
8
297
29
21
17
31
1.96
94444398--94444535
71
2.0
70
89
1
213
31
23
15
28
1.95
94444240--94444531
159
1.8
159
93
0
512
31
22
16
30
1.96
94444429--94444769
120
2.9
118
92
5
541
33
20
16
29
1.95
94444669--94444833
68
2.5
67
87
7
230
30
24
16
29
1.96
94458505--94458543
20
2.0
19
85
5
51
30
0
2
66
1.05
94458992--94459063
16
4.5
16
80
16
78
9
1
41
47
1.45
94459000--94459065
32
2.0
34
88
11
102
7
1
43
46
1.41
94460536--94460580
16
2.8
16
82
0
63
15
6
15
62
1.52
94461920--94461955
2
18.0
2
100
0
72
50
0
0
50
1.00
94462435--94462468
2
17.0
2
100
0
68
50
0
0
50
1.00
94463351--94463375
12
2.1
12
100
0
50
68
8
0
24
1.16
94463475--94463532
26
2.1
28
81
12
68
67
1
10
20
1.29
94464376--94464413
2
19.0
2
100
0
76
50
0
0
50
1.00
94467800--94467847
14
3.4
14
82
2
51
25
25
16
33
1.96
94467851--94467901
21
2.4
22
83
9
70
39
33
3
23
1.73
94467932--94467967
14
2.6
14
90
0
54
22
19
33
25
1.97
94467963--94468052
21
4.3
21
74
5
65
26
16
28
27
1.97
94469606--94469680
36
2.1
36
100
0
150
32
8
21
38
1.82
94471528--94471626
17
5.6
17
85
7
135
39
12
12
36
1.80
94471520--94471626
35
3.0
35
93
4
178
39
11
13
36
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94471528--94471626
18
5.6
18
87
4
148
39
12
12
36
1.80
94474132--94474213
31
2.6
31
88
0
119
40
9
28
21
1.85
94476655--94476709
25
2.2
24
78
9
56
5
14
3
76
1.10
94476668--94476710
9
5.0
9
86
11
63
9
9
2
79
1.03
94476721--94476755
8
4.4
8
92
0
61
40
0
0
60
0.97
94476715--94476756
13
3.0
13
81
18
57
40
0
0
59
0.97
94477815--94477873
30
2.0
30
100
0
118
32
30
3
33
1.74
94479254--94479292
13
3.0
13
100
0
78
15
30
38
15
1.88
94484230--94484293
32
2.0
32
96
0
119
31
32
9
26
1.88
94498775--94498820
17
2.8
16
83
9
65
56
4
8
30
1.49
94498900--94499007
56
1.9
56
92
0
180
21
14
12
51
1.74
94500679--94500825
65
2.3
64
85
1
186
29
25
19
25
1.99
94500779--94500849
24
3.0
24
80
0
79
30
23
18
26
1.97
94500938--94501033
40
2.3
41
87
3
131
35
17
14
32
1.90
94504436--94504486
22
2.4
22
80
3
68
45
3
15
35
1.65
94506253--94506368
43
2.7
43
85
5
137
22
14
28
34
1.94
94515022--94515362
119
2.9
119
90
0
522
32
19
15
32
1.93
94525528--94525636
54
2.0
54
100
0
218
36
12
15
34
1.86
94527374--94527419
18
2.5
19
75
13
51
67
4
4
23
1.27
94529774--94529848
37
2.0
37
94
0
132
36
30
13
20
1.91
94529785--94529844
18
3.2
20
65
20
56
38
33
11
16
1.85
94537189--94537235
24
1.9
25
83
12
62
25
10
8
55
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94539806--94539843
18
2.1
18
85
9
51
21
0
10
68
1.19
94540372--94540400
2
14.5
2
100
0
58
48
0
0
51
1.00
94542281--94542340
29
2.1
29
81
6
68
41
10
6
41
1.65
94543752--94543833
10
8.0
10
72
17
53
29
3
2
64
1.23
94543965--94544036
18
3.9
17
75
18
65
56
1
4
37
1.27
94544290--94544436
10
13.4
11
69
20
51
33
4
0
62
1.14
94544284--94544375
34
2.8
32
82
14
114
29
2
0
68
1.01
94544306--94544459
20
7.6
19
73
18
89
35
4
0
60
1.17
94544290--94544386
44
2.2
44
85
5
124
31
3
0
64
1.09
94548699--94548737
20
2.0
20
84
0
51
74
7
0
17
1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345