genome.fa.s12.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  115  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30754495--30754524	11	2.7	11	94	0	51	90	10	0	0	0.47
30754495--30754524	14	2.1	14	93	0	51	90	10	0	0	0.47
30755618--30755681	31	2.1	31	84	0	83	51	9	1	37	1.44
30764130--30764166	16	2.4	16	90	4	58	40	0	2	56	1.13
30776464--30776565	37	2.6	38	75	20	95	57	4	4	32	1.41
30776750--30776812	33	1.9	33	83	6	83	50	1	7	39	1.41
30778200--30778519	75	4.3	73	83	4	374	32	19	15	31	1.93
30778446--30778696	91	2.8	88	75	10	235	35	18	17	27	1.94
30778638--30779308	159	4.3	153	76	15	520	33	19	16	30	1.94
30778801--30779386	78	7.5	75	75	15	453	32	19	16	30	1.94
30778134--30779386	396	3.2	380	73	14	1018	33	19	16	30	1.94
30778159--30779390	557	2.2	546	83	7	1522	33	19	16	31	1.94
30779078--30779249	87	2.0	88	87	4	249	36	19	16	27	1.94
30779006--30779310	162	1.9	161	87	3	452	34	20	16	28	1.95
30787603--30787637	12	3.0	12	91	4	54	42	5	22	28	1.76
30789253--30789303	24	2.1	23	82	13	59	58	5	3	31	1.40
30790197--30790242	23	2.0	23	84	12	60	45	10	6	36	1.65
30790204--30790248	23	2.0	23	82	8	56	40	13	8	37	1.76
30808691--30808807	40	2.9	41	82	3	121	27	17	27	28	1.97
30813716--30813754	18	2.2	18	95	0	69	28	0	12	58	1.34
30813940--30814047	10	11.0	9	75	15	90	1	17	2	77	0.97
30813928--30814047	9	13.1	9	76	10	91	2	18	2	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30813940--30814047	19	5.5	19	77	12	103	1	17	2	77	0.97
30813940--30814041	29	3.4	29	83	5	125	1	18	1	77	0.96
30816025--30816143	41	3.0	40	74	6	107	15	17	27	38	1.91
30816069--30816160	41	2.2	41	82	0	103	18	20	26	34	1.96
30818962--30819029	31	2.2	31	81	0	82	52	7	4	35	1.49
30821770--30821809	16	2.3	18	87	8	57	32	2	5	60	1.32
30824288--30824351	30	2.1	31	85	8	87	60	10	4	23	1.48
30828491--30828564	31	2.4	31	84	4	96	60	2	1	35	1.19
30832321--30832380	20	3.3	18	75	22	54	63	0	3	33	1.11
30833973--30834231	83	3.1	83	85	0	329	26	16	19	36	1.94
30834101--30834552	202	2.2	202	90	0	681	28	20	18	32	1.96
30834389--30834671	119	2.4	119	87	1	406	27	21	18	31	1.97
30846571--30846618	17	2.9	16	78	6	51	66	0	2	31	1.03
30846721--30846778	20	2.5	23	80	20	68	65	0	1	32	1.03
30846721--30846871	46	3.3	46	74	12	118	62	0	3	33	1.19
30848140--30848271	66	2.0	66	97	1	248	18	8	37	35	1.81
30848539--30848570	2	16.0	2	100	0	64	50	0	0	50	1.00
30850470--30850500	2	15.5	2	100	0	62	51	0	0	48	1.00
30854548--30854629	21	3.8	21	90	3	110	32	26	25	14	1.95
30854534--30854637	42	2.4	43	82	3	138	36	25	23	15	1.93
30854559--30854629	21	3.3	21	96	4	124	32	28	26	12	1.93
30855011--30855068	15	3.8	15	88	2	89	51	12	0	36	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30856339--30856375	5	7.2	5	96	3	65	56	0	0	43	0.99
30856398--30856426	8	3.6	8	100	0	58	62	0	0	37	0.96
30856338--30856445	52	2.0	58	82	14	140	56	4	0	38	1.20
30858149--30858187	20	2.0	20	100	0	78	51	10	7	30	1.64
30861758--30861808	16	3.1	16	81	13	59	3	21	1	72	1.11
30862792--30862868	40	1.9	40	91	0	127	14	14	35	36	1.86
30864809--30864872	30	2.1	30	100	0	128	15	12	37	34	1.85
30865676--30865721	14	3.3	14	90	6	67	28	2	6	63	1.31
30865769--30865882	2	60.0	2	77	13	98	43	2	1	51	1.25
30866188--30866244	29	2.1	27	84	12	73	35	10	0	54	1.35
30866519--30866563	22	2.1	22	84	8	58	37	2	2	57	1.23
30866740--30866768	15	1.9	15	100	0	58	34	0	10	55	1.34
30878960--30879108	73	2.0	73	90	2	237	30	17	21	30	1.96
30879087--30879122	14	2.6	14	90	0	54	25	19	2	52	1.59
30879015--30879517	89	5.6	89	80	7	524	29	16	18	35	1.93
30879357--30879392	14	2.6	14	86	0	54	25	11	5	58	1.54
30879015--30879759	181	4.3	177	81	8	733	28	16	18	35	1.93
30879033--30879517	270	1.8	267	81	7	604	30	16	18	34	1.94
30879213--30879759	90	6.4	83	70	16	257	28	16	19	35	1.94
30881585--30881619	14	2.4	15	90	4	54	31	2	2	62	1.24
30881667--30881702	2	18.0	2	100	0	72	50	0	0	50	1.00
30882139--30882190	25	2.0	27	81	7	63	32	5	9	51	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30882421--30882467	24	2.0	24	87	8	69	36	2	4	57	1.30
30882549--30882599	3	17.0	3	100	0	102	33	0	0	66	0.92
30882670--30882698	15	1.9	15	100	0	58	34	0	10	55	1.34
30892101--30892160	30	2.0	30	90	6	95	45	28	6	20	1.76
30892306--30892866	79	7.2	75	73	14	377	32	18	18	30	1.95
30891937--30892741	246	3.3	241	82	8	870	34	19	16	29	1.94
30892423--30892593	93	1.8	93	85	3	238	31	19	21	27	1.97
30892363--30892686	166	1.9	167	85	6	442	32	19	19	28	1.96
30892516--30892866	75	4.7	75	87	5	442	32	19	17	30	1.95
30892516--30892869	154	2.4	146	86	5	458	31	19	17	31	1.95
30892823--30892918	49	2.0	49	97	0	183	32	20	16	30	1.95
30892872--30893012	72	2.0	72	98	0	273	33	18	15	32	1.92
30892751--30892990	121	2.0	121	94	0	426	34	18	16	30	1.93
30892872--30893092	72	2.9	77	86	7	220	33	19	16	31	1.94
30893061--30893166	54	1.9	55	83	5	135	39	19	13	27	1.89
30893146--30893179	13	2.5	13	90	4	50	58	8	11	20	1.59
30893017--30893372	140	2.5	140	95	2	624	37	20	16	25	1.93
30893201--30893306	54	1.9	54	81	9	126	37	17	15	29	1.91
30893374--30893408	14	2.5	14	90	0	52	57	5	20	17	1.60
30893255--30893485	91	2.6	90	89	6	339	35	19	18	27	1.94
30893388--30893540	77	2.0	77	88	2	227	31	21	20	26	1.98
30893504--30893607	54	1.9	54	86	3	147	37	22	16	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30893563--30893757	72	2.7	72	84	4	241	36	23	14	25	1.92
30902557--30902684	39	3.3	39	74	10	120	52	3	6	37	1.45
30902628--30902687	24	2.5	24	74	15	61	58	5	5	31	1.41
30915276--30915357	3	27.3	3	97	0	155	65	1	0	32	1.00
30916220--30916294	22	3.4	22	79	3	80	16	26	18	38	1.91
30916675--30916708	6	5.7	6	96	0	59	2	17	11	67	1.34
30916769--30916820	3	17.3	3	100	0	104	65	0	0	34	0.93
30917538--30917600	32	2.0	32	100	0	126	58	9	6	25	1.53
30917789--30917857	20	3.4	21	69	20	65	43	17	0	39	1.49
30917775--30917876	39	2.6	40	86	9	106	47	16	0	36	1.47
30917813--30917875	18	3.3	18	68	20	56	46	19	0	34	1.50
30917791--30917878	39	2.2	39	95	2	158	43	19	0	37	1.51
30919957--30919995	13	3.0	12	82	17	51	66	0	2	30	1.05
30921289--30921331	18	2.4	18	80	7	52	46	2	0	51	1.13
30922935--30923112	42	4.2	42	88	0	239	44	15	23	16	1.86
30922977--30923087	21	5.3	21	70	4	98	45	16	21	17	1.86
30922963--30923107	21	6.9	21	64	8	71	44	16	22	17	1.87
30923743--30923802	26	2.4	24	83	8	75	68	3	0	28	1.05
30923773--30923831	21	2.8	22	85	7	70	69	6	0	23	1.12
30925798--30925828	7	4.4	7	100	0	62	48	0	0	51	1.00
30926078--30926108	2	15.5	2	93	0	53	0	51	0	48	1.00
30929972--30930012	21	1.9	22	90	5	66	48	7	14	29	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30934038--30934168	63	2.1	63	98	0	253	31	16	18	34	1.93
30938782--30938871	37	2.4	36	90	3	144	24	33	17	24	1.96
30938967--30939181	49	4.4	49	96	0	376	29	32	9	29	1.88
30942012--30942076	20	3.4	18	76	16	60	26	24	1	47	1.61
30944309--30944363	19	2.9	19	94	0	101	40	12	9	38	1.75
30944767--30944799	15	2.1	17	88	11	52	45	15	6	33	1.70
30945396--30945430	16	2.2	16	89	0	52	5	11	5	77	1.12
30946129--30946177	20	2.5	20	79	0	53	30	2	4	63	1.24
30954105--30954492	3	132.0	3	74	9	210	59	2	6	30	1.36
30955888--30956046	44	3.6	43	80	8	117	25	24	19	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345