genome.fa.s12.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  137  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37329396--37329510	33	3.4	34	78	3	117	36	11	12	40	1.78
37329438--37329510	34	2.2	34	87	2	103	36	12	9	41	1.75
37329463--37329538	33	2.3	34	83	2	91	35	15	7	40	1.77
37329630--37329804	89	2.0	89	80	0	197	24	17	21	37	1.94
37331570--37331661	37	2.4	36	89	5	130	27	31	18	22	1.97
37331710--37332275	49	11.6	49	95	0	925	29	28	9	32	1.89
37335801--37335858	10	5.9	10	72	24	52	67	5	1	25	1.21
37335800--37335855	19	2.9	19	89	2	85	67	5	1	25	1.21
37336168--37336474	152	2.0	152	97	0	578	41	8	7	42	1.64
37336481--37336523	18	2.3	19	92	4	70	44	0	0	55	0.99
37336513--37336549	19	2.0	19	89	5	58	35	0	2	62	1.10
37341794--37341845	20	2.6	20	96	0	95	25	28	30	15	1.96
37342776--37342853	37	2.1	37	100	0	156	20	32	19	28	1.97
37342956--37343078	49	2.5	49	95	0	219	29	33	10	26	1.90
37365608--37365765	24	6.6	24	94	0	255	20	18	25	36	1.95
37373296--37373502	24	8.6	24	96	0	351	20	17	25	36	1.94
37384851--37384875	12	2.1	12	100	0	50	60	16	8	16	1.58
37392761--37392804	12	3.8	12	81	3	54	13	11	0	75	1.06
37395846--37396053	40	5.2	40	86	0	236	25	22	26	25	2.00
37395848--37396053	80	2.6	80	85	1	261	25	22	26	25	2.00
37403972--37404179	40	5.2	40	86	0	236	25	22	26	25	2.00
37403974--37404179	80	2.6	80	85	1	261	25	22	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37410648--37410673	13	2.0	13	100	0	52	30	7	23	38	1.83
37412047--37412254	40	5.2	40	85	0	227	26	22	25	25	2.00
37412049--37412254	80	2.6	80	85	1	252	26	22	26	25	2.00
37420121--37420250	29	4.5	29	90	1	172	28	28	14	28	1.95
37421821--37422011	39	4.9	39	92	1	312	24	29	20	25	1.99
37429848--37430032	79	2.3	81	83	7	227	23	27	24	24	2.00
37429841--37430032	40	4.8	39	76	8	163	23	28	23	24	2.00
37434590--37434745	42	3.7	42	82	5	181	28	13	25	32	1.93
37437156--37437184	2	14.5	2	100	0	58	51	0	0	48	1.00
37439934--37439958	3	8.3	3	100	0	50	32	0	0	68	0.90
37444862--37445166	55	5.6	54	82	7	359	22	24	17	35	1.95
37444862--37445158	108	2.7	108	91	0	486	22	24	17	35	1.95
37445359--37445442	44	1.9	44	82	4	107	26	23	11	38	1.90
37454149--37454313	49	3.5	45	74	9	143	25	27	20	26	1.99
37454336--37454499	48	3.5	48	77	9	167	24	29	17	28	1.97
37458612--37458709	40	2.5	40	96	1	180	24	27	24	23	2.00
37461947--37462047	28	3.5	28	86	6	114	29	13	26	29	1.94
37469904--37470004	28	3.5	28	86	6	114	29	13	26	29	1.94
37472666--37472735	27	2.5	28	88	2	106	31	25	14	28	1.95
37480734--37480803	27	2.5	28	88	2	106	31	25	14	28	1.95
37484586--37484730	40	3.6	40	84	4	184	22	26	24	26	2.00
37496259--37496328	27	2.6	27	93	2	113	30	28	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37503607--37503783	40	4.6	39	80	8	175	23	26	24	24	2.00
37503607--37503783	78	2.3	79	83	4	209	23	26	24	24	2.00
37509648--37509843	50	3.9	49	79	4	214	26	18	25	29	1.98
37514245--37514478	48	4.9	48	84	2	254	25	18	30	25	1.98
37514245--37514478	96	2.4	96	81	3	283	25	18	30	25	1.98
37523254--37523320	27	2.4	28	87	2	91	28	28	14	28	1.96
37524659--37524696	20	2.1	18	85	14	51	10	15	0	73	1.09
37531104--37531170	27	2.4	28	87	2	91	31	28	11	28	1.92
37532508--37532545	20	2.1	18	85	14	51	10	15	0	73	1.09
37539725--37539820	29	3.1	30	75	10	88	36	1	5	57	1.28
37540348--37540389	21	2.0	21	81	9	50	16	9	7	66	1.42
37547740--37547902	39	4.2	39	85	3	170	22	21	30	26	1.99
37547770--37547915	39	3.7	39	88	0	211	22	21	27	28	1.99
37555773--37555947	39	4.6	39	86	5	232	22	21	28	28	1.99
37556975--37557163	53	3.5	54	78	13	199	34	14	25	25	1.94
37559708--37559836	27	4.8	27	82	6	145	31	12	17	38	1.87
37559708--37559836	54	2.4	55	84	5	165	31	12	17	38	1.87
37559844--37559931	27	3.3	27	79	9	108	35	12	18	34	1.88
37559762--37559930	92	1.8	92	85	7	236	32	12	18	36	1.89
37581604--37581648	23	1.9	24	82	13	58	28	0	17	53	1.44
37588486--37588596	27	4.1	27	82	5	127	36	25	22	16	1.94
37588486--37588596	54	2.1	53	86	1	150	36	25	22	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37588714--37588773	27	2.3	26	80	16	70	31	11	18	38	1.87
37592410--37592618	80	2.6	79	87	3	278	23	22	28	24	1.99
37592366--37592591	40	5.7	40	89	2	303	25	23	26	24	2.00
37599890--37600071	40	4.6	39	75	9	154	23	25	24	26	2.00
37599916--37600019	39	2.6	40	84	1	120	23	25	23	28	1.99
37603897--37604080	40	4.6	40	86	1	217	26	22	26	24	2.00
37603937--37604110	80	2.2	80	82	3	199	25	21	27	25	1.99
37610646--37610798	40	3.8	40	81	3	146	23	22	27	26	1.99
37614150--37614226	29	2.7	29	81	0	91	23	18	33	24	1.96
37621543--37621588	22	2.0	23	95	4	85	36	13	21	28	1.91
37621565--37621623	29	2.0	30	96	3	111	30	13	27	28	1.94
37621578--37621683	29	3.7	29	79	5	99	25	16	32	25	1.97
37625323--37625541	40	5.6	40	93	3	367	23	23	26	26	2.00
37627229--37627388	46	3.5	45	74	16	148	28	29	20	21	1.98
37627811--37627870	30	2.0	30	90	0	93	30	25	8	36	1.85
37630326--37630545	39	5.6	40	92	3	367	23	22	27	26	2.00
37630326--37630545	79	2.8	80	93	4	367	23	22	27	26	2.00
37638372--37638593	40	5.6	40	91	3	351	23	22	26	27	2.00
37641645--37641794	37	4.1	37	92	3	239	26	30	19	23	1.98
37641999--37642154	47	3.3	47	95	0	267	25	27	12	34	1.92
37642134--37642170	16	2.3	16	100	0	74	24	32	10	32	1.90
37642087--37642217	63	2.1	63	98	0	253	25	29	12	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37642150--37642255	47	2.3	47	93	6	153	26	29	11	33	1.91
37642041--37642255	110	2.0	109	95	3	387	26	29	12	32	1.92
37642177--37642256	25	3.3	24	70	19	69	30	27	10	32	1.89
37652364--37652388	13	1.9	13	100	0	50	32	4	24	40	1.73
37653456--37653582	42	3.0	42	79	6	132	23	16	25	33	1.96
37656125--37656254	40	3.3	39	76	8	136	23	27	23	24	2.00
37656141--37656292	40	3.8	40	78	6	148	22	26	23	27	1.99
37656141--37656290	80	1.9	80	83	8	198	22	26	24	27	1.99
37664065--37664194	40	3.3	39	76	8	136	23	27	23	24	2.00
37664081--37664232	40	3.8	40	78	6	148	22	26	23	27	1.99
37664081--37664230	80	1.9	80	83	8	198	22	26	24	27	1.99
37667091--37667220	40	3.3	39	76	8	136	23	27	23	24	2.00
37667107--37667258	40	3.8	40	78	6	148	22	26	23	27	1.99
37667107--37667256	80	1.9	80	83	8	198	22	26	24	27	1.99
37675028--37675157	40	3.3	39	76	8	136	23	27	23	24	2.00
37675044--37675195	40	3.8	40	78	6	148	22	26	23	27	1.99
37675044--37675193	80	1.9	80	83	8	198	22	26	24	27	1.99
37680445--37680612	43	4.0	43	74	7	137	32	25	13	28	1.93
37685885--37686100	40	5.5	40	91	3	325	25	27	23	24	2.00
37693870--37694124	40	6.5	40	89	6	346	25	27	23	24	2.00
37693870--37694124	118	2.2	119	86	8	344	25	27	23	24	2.00
37697933--37698066	56	2.4	56	93	0	223	26	17	24	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37705320--37705377	27	2.1	27	80	0	62	31	12	15	41	1.84
37709527--37709657	29	4.5	29	96	0	226	29	14	29	25	1.95
37709641--37709716	29	2.6	29	80	0	89	19	18	36	25	1.94
37709527--37709686	87	1.8	87	89	0	248	26	15	32	25	1.95
37709527--37709715	87	2.2	87	83	1	236	26	15	32	25	1.96
37709750--37709782	2	16.5	2	100	0	66	48	0	0	51	1.00
37717386--37717516	29	4.5	29	94	0	217	30	14	29	25	1.95
37717500--37717574	29	2.6	29	80	0	87	20	18	36	25	1.95
37717386--37717545	87	1.8	87	89	0	248	27	15	31	25	1.95
37717386--37717575	87	2.2	87	84	0	245	27	15	31	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345