genome.fa.s12.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  176  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49616662--49616764	29	3.6	29	80	2	91	25	33	17	24	1.96
49622214--49622339	46	2.8	45	91	2	198	23	22	26	28	1.99
49624657--49624806	44	3.5	43	79	13	157	25	18	24	32	1.97
49624657--49624814	43	3.7	43	80	4	149	25	18	24	32	1.97
49627825--49627912	45	2.0	45	90	0	140	39	25	11	23	1.88
49629554--49629661	39	2.8	39	95	0	189	24	25	28	22	1.99
49636190--49636349	39	4.1	39	95	0	284	21	24	30	23	1.99
49658640--49658708	34	2.0	34	85	0	93	31	21	21	24	1.98
49659934--49660053	43	2.8	42	79	7	134	32	15	24	27	1.96
49668132--49668218	27	3.3	26	85	9	113	36	24	21	17	1.94
49674827--49674856	10	3.1	10	95	4	53	50	10	6	33	1.62
49675932--49676044	27	4.2	28	90	3	171	35	23	23	17	1.95
49675932--49676045	55	2.1	54	90	6	178	35	22	23	17	1.95
49686444--49686617	72	2.4	71	84	6	217	24	18	26	29	1.98
49688722--49688803	43	1.9	43	87	0	119	21	19	30	28	1.98
49702473--49702777	27	11.6	27	77	6	153	39	21	7	31	1.81
49702762--49702903	27	5.3	27	83	0	176	33	18	21	26	1.96
49703327--49703379	6	8.7	6	80	12	63	18	16	16	47	1.83
49703299--49703370	31	2.3	31	85	4	92	18	16	15	50	1.79
49707727--49707909	40	4.6	39	87	7	219	26	27	20	25	1.99
49714604--49714706	29	3.6	29	92	2	154	26	15	32	26	1.96
49718244--49718469	40	5.7	40	90	4	282	26	25	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49719843--49719902	30	2.0	30	87	6	86	40	10	21	28	1.85
49720557--49720743	49	3.8	49	86	2	275	25	19	26	28	1.98
49720552--49720739	100	1.9	100	98	0	367	25	20	26	28	1.99
49723461--49723492	15	2.1	15	94	5	55	12	12	15	59	1.61
49725529--49725587	29	2.0	30	87	9	86	35	8	27	28	1.86
49728147--49728176	15	2.0	15	93	0	51	46	30	10	13	1.75
49729285--49729319	8	4.4	8	88	0	52	54	20	22	2	1.58
49729530--49729644	29	4.0	28	78	8	106	25	14	30	29	1.95
49731489--49731515	9	3.0	9	100	0	54	11	22	44	22	1.84
49734384--49734558	46	3.8	46	75	13	169	21	20	27	30	1.98
49738408--49738571	40	4.1	40	83	0	193	24	21	27	26	1.99
49740107--49740276	93	1.8	92	91	1	277	22	20	27	28	1.99
49740112--49740285	46	3.8	46	75	16	171	22	20	27	29	1.99
49742785--49742953	93	1.8	92	89	1	266	22	20	27	30	1.98
49747566--49747666	52	2.0	52	96	2	186	24	25	6	42	1.79
49748312--49748347	18	1.9	19	88	5	56	25	19	38	16	1.92
49748414--49748499	28	3.0	28	78	9	93	25	16	31	26	1.96
49750081--49750108	10	2.8	10	100	0	56	71	0	10	17	1.14
49766448--49766530	25	3.4	25	71	20	68	68	1	10	19	1.25
49771318--49771402	29	3.0	29	78	1	91	28	12	31	27	1.93
49772529--49772562	18	1.9	18	88	5	52	41	11	17	29	1.85
49773017--49773096	32	2.5	31	84	11	92	41	2	8	47	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49773347--49773385	20	2.0	20	89	0	60	66	0	33	0	0.92
49777128--49777167	20	2.0	20	90	0	62	40	20	0	40	1.52
49777354--49777498	53	2.8	51	85	4	168	22	22	15	38	1.92
49778465--49778535	31	2.3	31	87	2	106	26	22	14	36	1.92
49778743--49778909	23	7.1	23	92	2	244	26	20	23	28	1.99
49778743--49778911	47	3.6	46	88	4	257	26	20	24	28	1.99
49778956--49779006	20	2.5	20	93	0	84	31	21	11	35	1.90
49779043--49779090	25	1.9	25	91	0	78	25	14	25	35	1.94
49780240--49780319	27	3.0	27	77	0	79	23	22	18	35	1.96
49780341--49780392	27	1.9	27	88	7	79	36	11	11	40	1.78
49780349--49780570	27	8.1	27	79	5	124	36	7	19	37	1.79
49780441--49780665	54	4.1	54	84	2	191	39	8	22	29	1.84
49780441--49780733	81	3.6	81	78	3	266	37	8	23	30	1.85
49780467--49780679	27	7.9	27	87	5	277	38	8	24	27	1.85
49780685--49780774	27	3.3	27	89	3	128	33	10	17	38	1.83
49780668--49780774	54	2.0	54	83	7	137	31	10	20	37	1.86
49780685--49780789	27	3.9	27	81	9	99	35	9	17	38	1.82
49784848--49784911	34	1.9	34	93	3	112	21	23	28	26	1.99
49785026--49785078	26	2.0	26	96	0	97	24	26	9	39	1.86
49792105--49792236	29	4.6	29	82	0	147	26	15	33	24	1.95
49799999--49800081	29	2.9	29	94	0	139	30	14	30	25	1.95
49801551--49801672	44	2.8	43	77	8	124	31	27	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49803416--49803770	47	7.6	46	68	15	140	27	20	29	22	1.98
49803419--49803779	94	3.9	93	76	12	303	27	19	29	22	1.98
49808188--49808215	7	4.0	7	100	0	56	42	14	28	14	1.84
49808459--49808615	43	3.6	44	76	13	166	26	17	25	29	1.98
49808459--49808597	44	3.2	43	80	10	126	28	17	23	29	1.97
49810536--49810574	20	1.9	20	89	5	60	35	0	2	61	1.10
49818293--49818474	40	4.6	40	88	2	269	24	22	26	26	2.00
49823497--49823743	27	9.3	27	85	9	321	29	23	7	39	1.82
49823497--49823743	53	4.6	54	90	3	367	29	23	7	39	1.82
49823505--49823741	26	9.0	24	83	13	240	28	23	8	40	1.83
49823729--49823835	27	4.0	27	85	0	151	38	19	8	33	1.82
49823733--49823851	54	2.2	54	81	3	150	38	19	10	31	1.86
49824470--49824538	28	2.5	28	95	2	122	43	27	10	18	1.82
49827368--49827564	27	7.3	27	86	6	265	29	22	7	39	1.82
49827368--49827564	54	3.6	54	93	0	313	29	22	7	39	1.82
49827368--49827591	81	2.8	81	83	1	270	31	22	7	38	1.82
49827550--49827656	27	4.0	27	85	0	151	38	19	8	33	1.82
49827554--49827672	54	2.2	54	81	3	150	38	19	10	31	1.86
49828291--49828359	28	2.5	28	95	2	122	43	27	10	18	1.82
49831472--49831738	87	3.0	87	67	13	247	34	17	19	28	1.95
49831418--49831699	87	3.2	87	68	12	250	34	19	20	25	1.96
49831367--49831738	177	2.1	177	94	0	663	34	18	20	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49834139--49834167	2	14.5	2	100	0	58	51	0	0	48	1.00
49837800--49837859	29	2.1	29	100	0	120	41	6	20	31	1.78
49837897--49838011	58	2.0	58	87	0	167	26	11	30	32	1.91
49837896--49838012	29	4.0	29	85	0	126	25	11	31	31	1.91
49846354--49846477	58	2.1	58	89	0	185	31	12	25	29	1.93
49846354--49846477	29	4.3	29	88	0	167	31	12	25	29	1.93
49847945--49848152	40	5.2	39	81	1	200	25	26	22	25	2.00
49847945--49848151	80	2.6	80	81	5	222	26	26	22	25	2.00
49856318--49856373	25	2.2	25	100	0	112	55	3	0	41	1.17
49868943--49869023	31	2.6	31	90	0	126	22	29	19	28	1.98
49869243--49869312	25	2.8	25	97	0	131	25	24	25	24	2.00
49869360--49869408	11	4.7	11	80	12	59	32	18	12	36	1.88
49871448--49871487	3	13.3	3	100	0	80	65	0	0	35	0.93
49877621--49877806	40	4.7	40	87	4	252	24	22	28	25	1.99
49877617--49877826	80	2.7	78	88	3	305	24	21	27	26	1.99
49883767--49883836	27	2.6	27	93	2	113	30	28	14	27	1.95
49888847--49889013	40	4.2	40	87	3	223	23	21	28	26	1.99
49894786--49894913	64	2.0	64	100	0	256	26	14	25	34	1.94
49895004--49895190	40	4.8	38	77	9	155	28	21	25	23	1.99
49897300--49897391	28	3.3	28	87	0	121	33	11	25	29	1.91
49897300--49897406	56	1.9	56	82	0	133	33	12	24	29	1.91
49897310--49897406	28	3.5	28	81	5	106	34	11	24	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49899549--49899635	27	3.2	27	85	6	115	16	22	24	36	1.94
49907517--49907660	46	3.1	46	70	16	127	30	27	18	22	1.98
49910081--49910193	27	4.2	26	83	9	129	19	24	21	34	1.96
49911105--49911129	13	1.9	13	100	0	50	32	28	40	0	1.57
49921726--49921806	23	3.3	23	76	8	72	24	24	17	33	1.96
49927836--49927957	46	2.6	47	82	3	147	22	27	18	30	1.98
49937406--49937525	49	2.4	49	81	2	125	22	24	20	32	1.98
49937447--49937665	46	4.6	47	75	11	162	22	27	19	29	1.98
49939589--49939626	8	4.9	8	93	6	60	26	0	0	73	0.83
49939589--49939626	15	2.5	15	91	4	58	26	0	0	73	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345