genome.fa.s12.2.7.7.80.10.50.1000.311.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  311  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93470938--93470969	15	2.1	15	94	0	55	84	0	0	15	0.63
93481107--93481140	18	1.9	18	88	5	52	41	0	5	52	1.25
93484049--93484093	15	3.2	14	84	6	56	68	0	0	31	0.89
93484119--93484152	18	1.9	17	88	5	50	67	2	0	29	1.05
93487580--93487757	22	8.0	22	75	8	119	19	25	17	37	1.94
93487584--93487757	44	3.9	43	74	4	150	19	25	17	36	1.94
93488817--93489866	529	2.0	530	93	0	1816	30	24	19	25	1.98
93490964--93491045	29	2.9	29	88	1	121	34	29	17	19	1.94
93491661--93491699	21	1.9	20	84	5	51	41	20	7	30	1.80
93492443--93492514	9	7.9	9	72	18	51	72	1	23	2	1.06
93492488--93492513	13	2.0	13	100	0	52	76	0	23	0	0.78
93493865--93493893	12	2.3	13	94	5	51	58	13	6	20	1.58
93494668--93494816	42	3.5	41	85	4	199	29	16	25	28	1.96
93501213--93501273	30	2.1	29	93	3	104	37	22	14	24	1.92
93506931--93507052	42	2.9	42	86	1	163	30	15	23	30	1.95
93509085--93509124	18	2.2	18	86	0	53	40	0	22	37	1.54
93512381--93512607	46	5.0	46	85	1	278	20	23	15	40	1.90
93516817--93516902	35	2.5	35	81	9	106	46	0	3	50	1.18
93517175--93517207	17	1.9	17	93	0	57	78	9	9	3	1.05
93518240--93518271	6	5.3	6	92	0	55	21	15	15	46	1.83
93518341--93518384	6	7.2	6	82	5	52	18	20	18	43	1.89
93520114--93520152	20	2.0	19	90	5	60	0	25	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93523414--93523622	49	4.3	49	84	1	258	36	25	14	23	1.93
93523421--93523596	24	7.2	23	66	23	85	36	23	14	24	1.93
93523588--93523637	25	2.0	25	92	0	82	38	30	14	18	1.89
93525127--93525234	42	2.6	43	79	7	114	29	18	23	28	1.98
93528780--93528824	2	22.5	2	100	0	90	51	0	0	48	1.00
93529937--93530031	40	2.4	40	87	3	131	36	34	14	13	1.86
93531896--93534128	743	3.0	743	97	0	4112	31	26	16	25	1.97
93535698--93536192	248	2.0	249	88	2	728	31	26	18	23	1.97
93538874--93538956	40	2.0	42	90	4	134	34	32	16	15	1.91
93543342--93543612	46	5.9	46	94	0	427	37	14	24	23	1.92
93543873--93543919	25	2.0	25	83	8	62	53	4	14	27	1.60
93548514--93548628	27	4.3	26	87	5	149	36	23	23	16	1.94
93548514--93548628	54	2.1	54	88	3	169	36	23	23	16	1.94
93550246--93550354	26	4.2	26	96	1	184	36	24	4	33	1.76
93554302--93554416	27	4.3	26	87	5	149	36	23	23	16	1.94
93554302--93554416	54	2.1	54	88	3	169	36	23	23	16	1.94
93556031--93556140	26	4.2	26	95	2	177	36	24	4	34	1.76
93556909--93556949	16	2.5	17	92	4	66	39	14	2	43	1.59
93562461--93562499	18	2.2	18	90	0	60	56	10	5	28	1.54
93563057--93563106	21	2.4	21	90	6	75	24	8	12	56	1.62
93563130--93563173	21	2.1	21	91	0	70	22	11	11	54	1.68
93563631--93563695	24	2.7	24	90	0	94	21	32	16	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93566754--93566789	19	1.9	19	88	5	56	58	2	2	36	1.27
93569936--93569999	29	2.2	29	88	0	92	21	12	14	51	1.75
93578113--93578189	29	2.5	31	76	18	72	55	7	7	28	1.56
93579938--93579998	29	2.1	29	93	0	104	34	8	8	49	1.62
93581390--93581424	3	11.7	3	100	0	70	34	0	0	65	0.93
93582347--93582382	18	2.0	18	100	0	72	33	5	16	44	1.71
93584824--93584855	15	2.1	15	94	0	55	81	0	9	9	0.88
93586486--93586546	24	2.7	23	80	14	72	65	1	11	21	1.33
93586524--93586564	14	2.8	15	81	7	57	75	0	2	21	0.92
93596551--93596680	66	2.0	66	89	0	197	26	17	17	37	1.92
93603513--93603551	19	2.1	19	100	0	78	25	10	10	53	1.66
93603408--93603659	135	1.9	135	99	0	495	27	19	11	41	1.85
93605464--93605527	29	2.2	31	77	11	71	60	9	6	23	1.50
93605866--93605907	22	2.0	22	90	4	68	71	4	0	23	1.05
93607476--93607512	16	2.2	17	90	4	58	40	10	5	43	1.63
93612322--93612376	16	3.4	16	92	0	92	36	7	29	27	1.84
93612623--93612655	17	1.9	17	100	0	66	63	0	0	36	0.95
93612803--93612844	19	2.2	18	91	8	66	28	4	9	57	1.51
93613708--93613767	29	2.1	29	100	0	120	33	20	21	25	1.97
93618648--93618706	31	1.9	30	86	3	82	37	16	5	40	1.71
93619269--93619309	21	2.0	21	90	9	66	26	17	26	29	1.97
93620573--93620613	21	2.0	21	100	0	82	29	29	19	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93624165--93624192	2	14.0	2	100	0	56	50	0	0	50	1.00
93625894--93626713	177	4.7	178	88	2	1192	27	22	18	31	1.97
93625895--93626713	349	2.3	349	89	2	1212	27	22	18	31	1.97
93632172--93632223	25	2.1	25	89	3	79	25	19	23	32	1.97
93632429--93632640	27	7.9	27	84	4	261	25	21	16	35	1.95
93632429--93632644	54	4.0	54	87	3	321	25	21	17	35	1.95
93632429--93632644	81	2.7	80	85	7	294	25	21	17	35	1.95
93632602--93632837	27	8.8	27	82	4	246	30	10	20	39	1.85
93632630--93632837	81	2.6	80	86	3	274	31	8	20	40	1.81
93632830--93632918	27	3.3	26	85	6	124	38	5	23	32	1.78
93632694--93632922	54	4.2	54	80	3	138	34	7	21	36	1.82
93632630--93632864	81	2.9	82	80	6	196	32	7	20	39	1.81
93632830--93632930	27	3.7	25	84	7	94	37	6	25	29	1.82
93637026--93637059	16	2.2	16	89	5	52	29	11	8	50	1.69
93637586--93637638	14	3.5	15	82	10	56	16	7	13	62	1.53
93637585--93637640	15	3.6	16	76	11	55	16	7	14	62	1.52
93637881--93637953	31	2.4	30	83	2	110	43	2	21	31	1.67
93638168--93638957	72	10.5	73	85	6	420	33	17	15	32	1.92
93638256--93638968	72	9.5	72	87	6	870	33	17	16	32	1.92
93638170--93638968	303	2.6	297	84	5	996	34	17	15	32	1.92
93638513--93638961	231	2.0	229	93	1	774	34	17	16	31	1.92
93638277--93638968	375	1.8	370	88	4	1041	34	17	16	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93641262--93641298	19	1.9	19	94	0	65	51	2	13	32	1.55
93641311--93641354	24	1.9	22	86	9	61	52	4	9	34	1.54
93641385--93641436	11	5.0	11	73	21	58	55	7	1	34	1.39
93641529--93641569	20	2.0	21	86	9	59	53	9	2	34	1.47
93642504--93642558	30	1.9	30	92	7	96	5	3	18	72	1.18
93652478--93652513	14	2.5	14	95	4	63	16	5	13	63	1.47
93652477--93652515	15	2.6	16	88	12	64	15	5	15	64	1.46
93652729--93652829	31	3.4	29	75	13	80	43	2	19	33	1.66
93652744--93652829	31	2.9	29	75	6	82	44	3	20	31	1.69
93653089--93653598	72	6.9	74	88	4	638	32	18	16	32	1.93
93655021--93655245	40	5.6	40	85	4	292	23	27	24	24	2.00
93656967--93657179	72	2.9	73	92	2	356	32	18	17	31	1.94
93662416--93662444	14	2.1	14	93	6	51	13	10	13	62	1.55
93662441--93662483	21	2.2	21	84	12	56	23	2	2	72	1.08
93662440--93662485	19	2.3	21	85	14	62	23	2	2	71	1.08
93662440--93662477	21	1.9	20	89	10	60	23	0	2	73	0.95
93663275--93663390	51	2.3	51	80	0	133	41	12	6	39	1.68
93666079--93666194	51	2.3	51	80	0	133	40	12	6	40	1.68
93669119--93669273	77	2.0	77	100	0	310	30	12	24	32	1.93
93674580--93674688	24	4.5	24	78	8	87	37	20	25	16	1.93
93674703--93674775	26	2.8	26	85	2	94	36	21	21	19	1.95
93674586--93674782	25	7.9	26	72	13	89	37	19	23	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93677351--93677406	22	2.5	22	91	2	94	30	3	12	53	1.55
93677911--93677957	20	2.3	20	82	10	51	57	0	0	42	0.98
93678773--93678832	29	2.1	29	81	6	68	31	5	13	50	1.63
93679021--93679087	31	2.3	27	76	14	62	41	11	8	37	1.73
93682437--93682503	22	3.0	22	82	8	91	38	16	26	17	1.91
93695338--93696026	73	9.0	72	74	14	496	27	15	21	34	1.94
93695538--93695566	14	2.1	14	100	0	58	13	13	6	65	1.45
93695338--93696080	233	3.2	230	82	11	834	27	16	21	34	1.94
93695553--93696023	153	3.1	152	81	9	477	28	15	21	35	1.94
93696006--93696040	17	2.1	17	89	10	54	11	17	5	65	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345