genome.fa.s12.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  148  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40514966--40515007	18	2.3	18	84	8	50	30	4	4	59	1.39
40514964--40515019	25	2.1	27	80	6	62	32	3	3	60	1.31
40514960--40515021	26	2.3	28	78	10	76	33	3	3	59	1.29
40529449--40529670	122	1.8	121	85	5	315	40	10	18	30	1.84
40532644--40532804	29	5.6	29	78	7	141	24	16	34	24	1.95
40535242--40535311	28	2.4	29	90	6	108	30	14	25	30	1.95
40543285--40543446	29	5.6	29	78	5	141	24	16	33	24	1.96
40555913--40555983	31	2.3	31	92	0	115	28	21	15	35	1.94
40555994--40556085	42	2.2	42	88	0	130	33	20	14	31	1.92
40556217--40556352	26	5.4	25	85	5	168	27	23	20	27	1.99
40556217--40556352	52	2.7	51	88	5	197	27	23	20	27	1.99
40556402--40556488	20	4.3	20	92	2	140	31	18	10	40	1.84
40557195--40557259	27	2.4	27	82	5	78	21	23	16	38	1.93
40557289--40557674	27	14.3	27	74	4	168	31	8	22	37	1.85
40557310--40557660	81	4.3	81	71	7	210	31	8	21	37	1.84
40557588--40557660	28	2.7	27	91	2	110	30	6	20	42	1.78
40557653--40557755	27	3.8	27	88	0	143	36	8	25	29	1.86
40557653--40557773	54	2.2	54	82	0	152	35	8	24	31	1.85
40559857--40559938	23	3.6	23	86	0	119	13	15	24	46	1.82
40560817--40560883	33	2.0	33	94	0	116	38	4	22	34	1.74
40561366--40561501	43	3.2	41	73	13	116	22	18	26	32	1.97
40562805--40562926	53	2.3	53	78	5	122	42	18	20	18	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40563272--40563316	22	2.0	22	100	0	90	33	8	26	31	1.87
40572209--40572416	40	5.2	40	81	2	184	25	23	25	25	2.00
40572211--40572416	80	2.6	80	80	3	209	24	23	26	25	2.00
40573128--40573213	43	2.0	43	97	0	163	31	11	15	41	1.82
40580033--40580240	40	5.2	40	82	2	202	25	23	25	25	2.00
40580035--40580240	80	2.6	80	83	3	236	25	23	26	24	2.00
40582095--40582179	32	2.7	31	85	7	109	34	25	17	22	1.96
40582095--40582185	31	2.9	32	85	6	114	34	25	16	24	1.95
40582468--40582532	26	2.5	26	92	2	103	32	20	21	26	1.97
40585085--40585246	26	6.2	26	95	0	261	33	6	24	35	1.81
40586686--40586760	26	2.8	26	81	4	78	37	21	10	30	1.87
40586862--40586976	27	4.3	27	84	7	135	17	22	23	36	1.95
40586862--40586976	54	2.1	54	87	3	160	17	22	23	36	1.95
40590902--40591035	26	5.2	26	95	0	216	35	5	23	35	1.78
40592654--40592766	27	4.2	27	82	3	120	16	23	22	37	1.94
40592652--40592766	54	2.1	54	87	6	162	16	23	22	37	1.94
40594421--40594525	53	2.0	53	81	3	122	37	19	23	20	1.94
40596723--40596774	26	2.0	26	100	0	104	34	7	23	34	1.83
40598576--40598609	17	2.0	17	88	0	50	32	8	20	38	1.84
40601103--40601145	21	2.0	21	100	0	86	37	13	13	34	1.85
40603042--40603100	20	3.0	20	85	5	84	15	32	18	33	1.92
40604797--40604916	23	5.2	23	69	0	69	43	21	14	20	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40604800--40604916	46	2.5	46	80	0	144	43	21	13	21	1.87
40605350--40605459	46	2.4	46	78	0	121	41	20	14	22	1.89
40604807--40605894	543	2.0	543	96	0	2023	32	22	13	31	1.92
40610788--40610926	44	3.2	43	75	7	140	33	23	15	28	1.95
40613928--40614168	40	6.0	40	88	3	328	22	23	27	25	2.00
40616152--40616190	15	2.6	15	95	0	69	5	15	23	56	1.59
40618334--40618565	49	4.7	49	83	4	268	26	18	26	27	1.98
40618341--40618522	99	1.8	101	88	4	280	27	17	26	28	1.98
40621566--40621634	30	2.3	30	82	7	88	7	15	18	57	1.61
40621566--40621634	15	4.7	15	82	8	79	7	15	18	57	1.61
40623748--40623976	50	4.7	48	85	4	289	25	18	27	28	1.98
40623748--40623984	97	2.4	98	84	6	309	24	19	27	28	1.99
40631708--40631841	44	3.1	42	81	11	132	24	15	26	33	1.95
40631708--40631846	42	3.2	42	80	7	129	25	16	25	33	1.96
40631752--40631869	43	2.8	42	78	7	105	24	16	24	33	1.96
40634112--40634143	16	2.0	16	100	0	64	62	6	25	6	1.42
40635879--40635943	28	2.3	28	91	0	103	15	44	20	20	1.86
40636931--40637482	47	11.7	47	69	13	189	25	29	18	26	1.98
40637125--40637390	144	1.8	144	94	0	469	27	28	17	26	1.98
40637076--40637481	46	8.6	46	70	16	215	25	28	18	27	1.98
40637269--40637484	94	2.3	94	95	0	387	25	28	19	27	1.99
40644700--40644975	47	5.8	46	75	13	242	21	30	19	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40644699--40644976	97	2.9	97	80	10	297	21	30	19	28	1.97
40644749--40645019	94	2.9	93	78	12	277	22	28	19	29	1.98
40644889--40645017	47	2.8	46	77	12	138	22	25	20	31	1.98
40648000--40648032	13	2.6	13	95	4	59	54	15	0	30	1.41
40650480--40650515	18	2.1	18	89	5	56	41	33	2	22	1.68
40657874--40658052	55	3.2	55	74	3	144	29	30	24	16	1.96
40662822--40662919	51	1.9	50	95	2	178	31	12	21	34	1.90
40673541--40673786	50	5.0	49	78	10	234	26	18	26	28	1.98
40673543--40673771	99	2.3	99	83	11	267	25	18	26	29	1.98
40685001--40685122	37	3.3	37	92	0	199	21	32	20	25	1.97
40685177--40685450	49	5.6	49	93	0	440	31	31	8	28	1.87
40692264--40692731	144	3.2	144	86	3	602	27	29	17	25	1.97
40692265--40692732	48	9.8	47	85	4	537	27	29	17	25	1.97
40704804--40704967	40	4.1	40	79	1	141	25	28	21	25	1.99
40738535--40738628	38	2.4	38	92	1	152	21	23	18	37	1.94
40738820--40738913	23	4.0	24	82	13	115	26	23	21	28	1.99
40738820--40738912	47	2.0	48	83	14	122	26	23	21	27	1.99
40738963--40739022	20	3.0	20	90	0	102	31	20	11	36	1.88
40739065--40739112	25	1.9	25	86	0	69	25	16	25	33	1.96
40747053--40747146	24	4.0	24	82	13	115	26	24	21	27	1.99
40747074--40747145	22	3.1	23	90	9	112	27	23	20	27	1.99
40747197--40747256	20	3.0	20	90	0	102	31	20	11	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40747297--40747345	25	2.0	25	87	0	71	26	16	24	32	1.96
40750335--40750485	40	3.8	39	80	6	153	27	23	27	22	1.99
40750372--40750501	40	3.3	39	80	4	161	24	23	27	24	2.00
40757458--40757506	17	2.8	18	74	22	50	24	18	22	34	1.96
40758324--40758490	40	4.2	40	79	6	169	25	21	27	25	1.99
40760468--40760630	38	4.4	38	85	11	241	22	22	16	38	1.93
40760491--40760604	31	3.5	31	89	8	147	23	21	14	40	1.90
40760491--40760630	69	2.0	69	98	0	271	23	21	15	39	1.92
40760821--40760916	24	4.0	23	82	9	113	25	23	21	29	1.99
40760822--40760915	47	2.0	49	85	12	133	25	24	22	27	2.00
40760967--40761026	20	3.0	20	90	0	102	31	20	11	36	1.88
40761069--40761116	25	1.9	25	86	0	69	25	16	25	33	1.96
40763111--40763283	93	1.9	93	89	4	269	28	30	19	21	1.98
40763104--40763278	46	3.8	45	72	15	160	29	29	19	21	1.97
40763155--40763298	46	3.1	45	69	22	111	29	27	20	22	1.98
40770025--40770191	40	4.2	40	82	2	185	25	27	21	25	1.99
40770025--40770191	80	2.1	79	83	7	205	25	27	21	25	1.99
40771013--40771058	17	2.5	19	74	22	53	34	23	17	23	1.96
40778020--40778186	40	4.2	40	82	2	185	25	27	21	25	1.99
40778020--40778186	80	2.1	79	83	7	205	25	27	21	25	1.99
40779009--40779054	17	2.5	19	74	22	53	34	23	17	23	1.96
40780397--40780822	47	9.1	47	91	0	638	25	27	13	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40785604--40785773	94	1.8	93	82	5	218	23	29	20	26	1.99
40789096--40789233	35	3.9	35	86	3	188	29	7	19	42	1.80
40796899--40797049	35	4.3	35	84	2	203	29	8	19	41	1.81
40809334--40809852	49	10.7	49	90	1	742	33	9	29	27	1.88
40813291--40813507	46	4.6	46	77	10	185	21	30	19	28	1.98
40813244--40813510	94	2.8	94	80	9	287	21	29	19	28	1.98
40815257--40815511	55	4.8	54	77	7	220	35	18	23	22	1.95
40815264--40815464	108	1.8	110	85	6	284	33	18	23	23	1.97
40818128--40818300	46	3.7	46	78	13	210	21	21	27	28	1.99
40818125--40818295	93	1.8	93	96	0	315	21	21	28	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345