genome.fa.s12.2.7.7.80.10.50.1000.225.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  225  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65386371--65386404	18	1.9	17	88	5	50	55	11	14	17	1.68
65386401--65386584	6	29.8	6	73	17	137	51	14	16	17	1.77
65386419--65386584	31	5.4	31	72	7	140	50	15	16	17	1.78
65386419--65386500	37	2.2	37	88	0	119	51	14	15	18	1.77
65386455--65386521	25	2.7	25	90	0	107	49	14	17	17	1.80
65386419--65386584	62	2.7	62	90	1	262	50	15	16	17	1.78
65386480--65386555	37	2.1	37	89	0	116	48	17	18	15	1.81
65386517--65386585	25	2.8	25	84	8	104	47	15	20	15	1.82
65387030--65387250	27	8.3	26	83	3	244	25	19	18	36	1.94
65387044--65387243	80	2.5	80	84	5	269	26	20	18	36	1.95
65387300--65387377	27	2.9	27	82	3	95	30	10	20	38	1.86
65387343--65387737	27	14.6	27	84	0	520	30	8	22	39	1.83
65387370--65387744	108	3.5	108	94	0	642	30	8	22	39	1.83
65387343--65387737	54	7.3	54	90	0	583	30	8	22	39	1.83
65388958--65388998	10	4.1	10	93	0	64	31	0	7	60	1.24
65393458--65393494	19	1.9	19	94	0	65	21	48	0	29	1.50
65395066--65395252	50	3.8	50	87	3	254	28	21	29	20	1.98
65396768--65397490	361	2.0	360	96	0	1347	29	16	17	35	1.92
65397702--65397760	30	2.0	30	82	0	73	32	5	23	38	1.77
65398104--65398331	48	4.9	48	75	7	191	25	21	25	27	1.99
65398102--65398330	96	2.5	91	82	9	241	25	20	26	27	1.99
65405548--65405754	53	3.8	53	78	3	207	38	16	24	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65409586--65409632	23	2.0	23	100	0	94	31	17	12	38	1.87
65415531--65415736	40	5.2	40	80	4	166	25	23	25	25	2.00
65415531--65415736	80	2.6	80	82	4	220	25	23	25	25	2.00
65426282--65426423	39	3.7	39	89	3	225	21	30	21	26	1.98
65426242--65426422	77	2.3	78	88	3	258	22	29	22	24	1.99
65428912--65429117	40	5.2	40	80	4	166	25	23	25	25	2.00
65428912--65429117	80	2.6	80	82	4	220	25	23	25	25	2.00
65434947--65435028	43	1.9	43	87	0	119	19	18	30	31	1.96
65438628--65438673	22	2.0	23	84	12	60	30	8	10	50	1.68
65442147--65442385	101	2.4	102	83	2	286	33	23	12	29	1.92
65444301--65444336	14	2.6	14	81	0	54	22	38	0	38	1.54
65445929--65446159	48	5.0	46	78	7	191	26	20	25	27	1.99
65445931--65446159	96	2.5	91	80	7	221	27	20	24	27	1.99
65448448--65448560	44	2.7	41	75	11	111	24	15	26	32	1.96
65453358--65453418	32	1.9	32	100	0	122	26	18	27	27	1.98
65454503--65454976	27	17.6	27	84	4	544	27	21	9	41	1.84
65456216--65456263	25	1.9	25	86	0	69	33	25	16	25	1.96
65456307--65456345	20	2.0	20	94	0	69	35	12	23	28	1.91
65456396--65456586	24	8.0	24	92	2	296	29	23	21	26	1.99
65462493--65462723	99	2.3	99	84	3	295	29	25	18	25	1.98
65479178--65479307	47	2.8	47	90	2	190	23	14	29	33	1.94
65486291--65486380	29	3.1	29	98	0	171	28	16	23	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65493262--65493353	44	2.2	42	82	5	105	31	26	16	26	1.96
65494165--65494195	15	2.1	15	100	0	62	45	6	12	35	1.68
65501278--65501305	2	14.0	2	100	0	56	50	0	0	50	1.00
65501844--65501887	21	2.1	21	87	8	63	18	25	27	29	1.98
65503157--65503208	22	2.3	23	86	3	70	67	0	1	30	1.02
65505318--65505487	40	4.2	40	90	6	261	22	22	28	25	1.99
65507667--65507696	15	2.0	15	100	0	60	40	20	0	40	1.52
65509179--65509211	7	4.9	7	85	7	50	60	0	0	39	0.97
65510372--65510571	55	3.7	54	78	9	183	36	17	24	22	1.95
65510371--65510571	108	1.8	110	86	4	291	35	17	24	21	1.95
65510815--65510845	16	1.9	16	93	0	53	41	0	22	35	1.54
65514267--65514438	93	1.8	93	96	0	317	27	29	21	20	1.98
65514260--65514435	46	3.8	46	79	12	216	28	29	21	20	1.98
65521869--65521954	46	1.9	45	85	4	120	31	29	19	19	1.97
65523997--65524704	358	2.0	358	97	0	1328	34	20	12	32	1.91
65527689--65527761	29	2.5	29	100	0	146	28	15	28	27	1.96
65529499--65529535	20	1.9	18	89	10	56	43	0	21	35	1.53
65534864--65534916	18	2.8	18	78	16	54	49	0	0	50	1.00
65534842--65534920	28	2.7	29	70	16	74	44	0	1	54	1.08
65548116--65548364	93	2.6	94	79	8	256	25	29	17	27	1.98
65548094--65548422	49	6.8	49	71	10	198	24	31	17	26	1.97
65548145--65548414	142	1.9	142	83	4	348	24	30	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65551085--65551252	40	4.2	40	80	4	169	23	27	23	25	2.00
65559134--65559301	40	4.2	40	80	4	169	23	27	23	25	2.00
65563004--65563035	15	2.1	15	94	0	55	28	3	40	28	1.71
65563821--65563876	19	2.9	19	100	0	112	14	10	37	37	1.81
65566238--65566346	37	2.9	37	91	0	173	26	31	19	22	1.98
65566493--65566628	48	2.8	48	95	2	236	30	28	6	33	1.83
65566597--65566816	47	4.7	47	94	0	386	26	27	12	34	1.92
65566712--65566790	25	3.3	25	67	22	78	29	26	10	34	1.89
65566737--65566808	22	3.1	22	64	24	58	23	29	13	33	1.93
65570706--65570848	71	2.0	71	90	0	223	28	18	20	31	1.97
65572196--65572237	2	21.0	2	100	0	84	50	0	0	50	1.00
65575845--65575882	12	3.2	12	84	0	58	28	0	0	71	0.87
65580687--65580760	31	2.4	31	97	0	139	31	12	13	43	1.81
65580770--65580818	25	2.0	25	100	0	98	30	8	16	44	1.76
65580755--65580900	75	1.9	80	88	7	230	31	10	13	43	1.79
65580842--65580897	28	2.0	28	100	0	112	35	10	14	39	1.81
65583130--65583250	44	2.7	44	85	2	152	34	28	14	22	1.93
65586968--65587002	12	2.9	12	91	0	52	11	14	20	54	1.70
65587224--65587288	23	2.8	23	79	6	69	35	6	13	44	1.69
65588172--65588237	13	5.1	13	74	7	62	31	4	22	40	1.74
65603659--65603697	18	2.2	18	100	0	78	28	17	5	48	1.68
65606376--65606520	77	1.9	77	85	2	202	37	24	15	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65607769--65607839	20	3.3	20	68	21	63	40	5	4	49	1.46
65607770--65607839	22	3.2	22	66	22	65	40	5	4	50	1.46
65607768--65607857	44	2.0	44	97	0	171	40	10	4	45	1.58
65607916--65607983	28	2.4	30	83	11	81	25	19	2	52	1.59
65607938--65608000	30	2.1	30	85	5	83	31	19	1	47	1.59
65609151--65609197	24	2.0	24	100	0	94	29	4	6	59	1.41
65609135--65609201	24	2.5	28	75	22	81	29	4	5	59	1.41
65612666--65612691	2	13.0	2	100	0	52	50	0	0	50	1.00
65613400--65613578	40	4.5	39	81	12	172	27	22	26	23	1.99
65613453--65613603	40	3.8	40	79	10	114	27	20	27	24	1.99
65627165--65627355	39	4.9	39	93	0	310	21	30	23	24	1.99
65630746--65630805	30	2.0	30	90	0	93	33	23	6	36	1.81
65634319--65634384	29	2.3	29	87	7	91	25	15	33	25	1.95
65638248--65638309	31	2.0	31	96	0	115	30	25	1	41	1.65
65639173--65639213	21	2.0	21	85	0	55	21	17	41	19	1.90
65646318--65646361	18	2.4	18	100	0	88	13	36	31	18	1.90
65650205--65650311	45	2.4	45	82	7	128	33	15	24	26	1.95
65661698--65661825	57	2.2	57	77	10	136	32	17	19	30	1.95
65669666--65669719	13	4.0	13	75	4	54	46	0	16	37	1.48
65669679--65669737	28	2.1	28	90	0	91	44	1	20	33	1.62
65669679--65669750	28	2.6	27	86	6	83	43	1	18	37	1.59
65672732--65672773	16	2.4	18	76	19	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65678670--65678715	22	2.0	22	83	4	56	65	4	2	28	1.23
65684080--65684138	24	2.5	23	81	10	57	45	5	10	38	1.60
65688962--65688997	13	2.8	14	84	16	51	27	25	0	47	1.52
65688949--65688989	18	2.2	19	87	12	59	29	24	0	46	1.53
65689112--65689245	38	3.4	38	71	10	92	28	27	20	23	1.99
65689482--65689520	18	2.1	19	90	4	62	48	10	0	41	1.37
65690836--65690887	5	10.0	5	80	15	61	57	0	0	42	0.98
65690841--65690889	7	6.7	7	78	17	55	57	0	0	42	0.99
65690835--65690889	12	4.5	12	84	13	76	56	0	0	43	0.99
65695400--65695435	13	2.8	14	84	16	51	27	25	0	47	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345