genome.fa.s12.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  12  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4140421--4140591	75	2.4	75	85	7	221	31	11	23	33	1.90
4147918--4148083	35	4.6	35	82	8	172	31	10	24	33	1.90
4147918--4148088	75	2.4	75	85	7	221	31	11	23	33	1.90
4154149--4154184	12	3.3	11	88	11	56	61	0	0	38	0.96
4154383--4154407	13	1.9	13	100	0	50	52	8	0	40	1.31
4154475--4154514	12	3.4	12	82	3	55	60	2	0	37	1.11
4155628--4155659	16	2.0	16	93	0	55	12	6	40	40	1.68
4156554--4156945	74	5.5	71	82	3	507	32	22	16	28	1.95
4156554--4157101	71	7.4	71	77	9	513	32	22	16	28	1.96
4156554--4157193	145	4.2	151	95	3	975	32	21	17	28	1.96
4156805--4157193	158	2.5	158	98	0	753	32	21	17	28	1.96
4169655--4169689	2	17.5	2	87	0	52	48	2	2	45	1.32
4169718--4169753	12	3.3	11	88	11	56	61	0	0	38	0.96
4169952--4169976	13	1.9	13	100	0	50	52	8	0	40	1.31
4170044--4170083	12	3.4	12	82	3	55	60	2	0	37	1.11
4171202--4171233	16	2.0	16	93	0	55	12	6	40	40	1.68
4172121--4172158	17	2.2	17	90	0	58	31	7	5	55	1.51
4172513--4172884	130	2.9	130	84	0	449	28	18	18	33	1.95
4172540--4172991	130	3.5	130	79	4	335	26	19	19	34	1.96
4185499--4185539	22	2.0	22	85	9	59	41	12	14	31	1.83
4190179--4190203	6	4.2	6	100	0	50	16	84	0	0	0.63
4193078--4193188	55	2.0	55	100	0	222	18	21	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4199204--4199253	15	3.3	15	80	0	55	26	16	40	18	1.90
4201444--4201479	6	6.0	6	93	0	54	0	16	38	44	1.48
4202269--4202311	20	2.2	20	83	8	52	41	11	2	44	1.53
4203450--4203484	17	2.0	18	94	5	63	25	5	0	68	1.11
4215409--4215471	30	2.1	30	90	0	99	57	12	3	26	1.51
4215509--4215556	22	2.2	22	81	7	53	58	6	18	16	1.59
4216258--4216296	2	19.5	2	94	0	69	51	0	0	48	1.00
4216252--4216296	12	3.8	12	93	0	63	51	0	0	48	1.00
4230415--4230466	21	2.6	21	72	6	54	65	1	3	28	1.21
4231580--4231605	12	2.2	12	100	0	52	53	0	0	46	1.00
4233721--4233864	46	3.1	44	68	21	98	29	28	19	22	1.98
4235744--4235786	18	2.4	18	88	7	61	53	0	0	46	1.00
4236857--4236889	5	6.6	5	96	0	57	78	0	3	18	0.87
4250508--4250561	28	1.9	28	81	7	65	37	1	7	53	1.40
4257609--4257648	16	2.4	16	95	4	71	30	0	0	70	0.88
4258017--4258104	31	2.8	31	80	13	85	52	9	5	32	1.57
4258192--4258281	41	2.2	42	80	7	105	46	12	10	31	1.74
4266743--4266767	2	12.5	2	100	0	50	52	0	0	48	1.00
4268338--4268397	27	2.2	27	82	8	77	28	0	0	71	0.86
4271204--4271274	28	2.4	28	81	11	79	43	2	7	46	1.45
4271601--4271627	5	5.4	5	100	0	54	22	0	0	77	0.76
4272345--4272371	14	1.9	14	100	0	54	22	0	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4279626--4279662	14	2.5	15	82	8	58	51	0	0	48	1.00
4283094--4283135	20	2.1	20	100	0	84	35	26	19	19	1.95
4283320--4283365	15	3.2	15	81	6	51	52	6	10	30	1.62
4299059--4299112	20	2.7	19	77	11	54	55	11	5	27	1.57
4300946--4300981	19	1.9	18	88	5	54	69	2	0	27	1.02
4304839--4304905	34	2.0	34	90	0	107	28	14	11	44	1.81
4319097--4319152	19	2.9	18	75	17	58	46	7	1	44	1.41
4319292--4319332	21	2.0	21	90	0	64	53	2	4	39	1.35
4319531--4319568	18	2.1	19	85	5	51	55	0	0	44	0.99
4326746--4326826	42	1.9	42	94	0	144	49	3	18	28	1.65
4329508--4329575	22	3.1	22	72	19	61	61	1	2	33	1.20
4347151--4347186	2	18.5	2	94	5	65	50	0	0	50	1.00
4352674--4352821	75	2.0	75	95	2	271	37	18	18	25	1.94
4357866--4357894	2	14.5	2	100	0	58	48	0	0	51	1.00
4358029--4358064	17	2.1	18	89	5	56	72	0	0	27	0.85
4359455--4359507	15	3.8	15	71	19	51	35	1	3	58	1.27
4368950--4369100	53	2.8	53	89	4	214	29	27	16	25	1.97
4378671--4378863	53	3.6	53	92	1	298	26	18	26	27	1.98
4380185--4380295	47	2.4	47	84	6	154	35	23	16	25	1.95
4381051--4381084	4	8.2	4	90	3	50	0	26	0	73	0.83
4387439--4387549	47	2.4	47	84	6	154	35	23	16	25	1.95
4390768--4390817	15	3.4	15	86	2	66	60	12	18	10	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4390779--4390826	15	3.2	15	79	5	53	56	14	16	12	1.68
4395076--4395110	2	17.5	2	100	0	70	51	0	0	48	1.00
4398573--4398605	14	2.4	14	100	0	66	9	36	6	48	1.60
4399694--4399720	2	13.5	2	100	0	54	48	0	0	51	1.00
4399897--4399927	6	5.2	6	100	0	62	51	16	16	16	1.77
4399962--4399998	6	6.2	6	93	0	65	48	16	18	16	1.81
4401128--4401182	5	11.0	5	100	0	110	60	0	0	40	0.97
4405123--4405182	30	2.0	30	86	0	84	28	23	8	40	1.83
4407846--4407952	40	2.7	40	86	0	169	26	17	22	33	1.96
4408142--4408193	16	3.2	16	78	10	61	34	3	25	36	1.74
4438307--4438352	23	2.0	23	100	0	92	34	34	13	17	1.88
4438628--4438712	21	3.9	20	68	25	57	28	0	2	69	1.01
4438647--4438696	26	2.0	26	92	7	86	32	0	4	64	1.12
4438690--4438721	13	2.4	14	89	10	57	28	0	0	71	0.86
4438694--4438722	13	2.2	13	100	0	58	27	0	0	72	0.85
4442304--4442340	2	18.5	2	94	0	65	45	0	2	51	1.15
4445327--4445395	21	3.4	21	71	15	72	36	1	7	55	1.37
4449395--4449452	21	2.9	21	85	12	77	68	5	22	3	1.24
4449404--4449467	21	2.9	21	82	13	67	67	4	23	4	1.29
4450080--4450111	16	2.0	16	100	0	64	50	0	0	50	1.00
4454613--4454638	7	3.7	7	100	0	52	30	38	15	15	1.88
4455839--4455908	35	2.0	35	100	0	140	45	17	20	17	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4457440--4457496	17	3.0	20	66	23	59	24	19	19	36	1.94
4462644--4462718	24	3.1	24	84	3	89	64	4	26	5	1.33
4462653--4462718	12	5.5	12	76	5	62	63	4	25	6	1.37
4464472--4464516	22	2.0	22	100	0	90	42	17	13	26	1.86
4466293--4466353	21	2.9	21	80	0	77	16	19	26	37	1.93
4471220--4471248	13	2.2	13	100	0	58	41	24	10	24	1.86
4474497--4474555	21	2.8	20	82	10	64	54	0	3	42	1.17
4479851--4479893	18	2.4	18	80	0	50	39	0	48	11	1.40
4480947--4481024	39	2.0	39	94	0	138	25	17	24	32	1.97
4486692--4486729	18	2.1	19	85	14	53	21	23	7	47	1.77
4492453--4492516	32	2.0	32	100	0	128	40	12	12	34	1.81
4494903--4494945	13	3.4	13	77	6	52	65	2	4	27	1.25
4498130--4498210	26	3.2	26	64	22	71	23	12	20	43	1.86
4498109--4498185	25	3.0	25	62	23	61	23	14	18	44	1.86
4498109--4498210	51	2.0	51	100	0	204	23	13	19	43	1.87
4500956--4501000	23	2.0	23	82	4	56	46	8	2	42	1.47
4502572--4502602	9	3.3	9	95	4	53	80	0	0	19	0.71
4502572--4502602	10	3.2	10	90	9	55	80	0	0	19	0.71
4505375--4505408	17	2.0	17	88	11	52	5	11	5	76	1.14
4505379--4505433	20	2.6	20	83	11	65	7	10	3	78	1.08
4505381--4505442	21	2.9	21	78	2	61	8	11	3	77	1.09
4505477--4505523	19	2.5	19	80	13	53	27	6	8	57	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4506587--4506621	3	11.7	3	93	0	61	34	34	31	0	1.58
4508481--4508566	41	2.1	41	100	0	172	31	4	26	37	1.77
4510218--4510259	6	7.0	6	94	0	75	52	16	30	0	1.44
4510213--4510259	12	3.8	12	88	2	67	53	17	29	0	1.44
4510237--4510282	21	2.2	21	84	0	56	60	10	23	4	1.47
4511838--4511862	2	12.5	2	100	0	50	48	0	0	52	1.00
4522810--4522842	6	5.5	6	96	0	57	36	0	60	3	1.12
4525026--4525059	17	2.0	17	94	0	59	50	0	0	50	1.00
4527127--4527178	13	4.2	13	73	7	54	44	5	0	50	1.26
4533120--4533178	24	2.5	24	85	0	82	30	10	20	38	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345