genome.fa.s12.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  13  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4544346--4544378	16	2.1	16	88	5	50	24	0	0	75	0.80
4544699--4544727	12	2.4	12	100	0	58	31	0	24	44	1.54
4553105--4553134	5	6.0	5	92	0	51	40	3	0	56	1.16
4554051--4554084	13	2.6	13	82	17	52	23	0	5	70	1.09
4558455--4558689	130	1.8	130	96	0	434	46	19	8	25	1.77
4562423--4562465	16	2.7	16	79	10	52	67	13	4	13	1.38
4565875--4566049	47	3.6	48	83	6	194	24	17	28	29	1.97
4571418--4571484	28	2.4	28	89	0	98	47	8	16	26	1.76
4571448--4571696	125	2.0	126	91	2	403	36	16	18	28	1.92
4572341--4572371	15	2.1	15	100	0	62	29	0	32	38	1.57
4574628--4574752	46	2.7	46	85	2	171	41	12	23	23	1.87
4579981--4580064	30	2.8	30	83	0	105	13	11	39	35	1.81
4580567--4580592	7	3.7	7	100	0	52	57	15	0	26	1.38
4588464--4588543	28	2.8	28	75	17	74	36	1	2	60	1.18
4590911--4590958	21	2.4	19	80	19	53	58	10	2	29	1.43
4592550--4592601	11	4.9	11	83	9	72	28	28	0	42	1.56
4592544--4592601	20	2.7	21	86	10	82	31	27	0	41	1.56
4592628--4592658	15	2.1	15	93	0	53	22	6	0	70	1.09
4594258--4594323	30	2.2	30	83	5	80	28	42	21	7	1.80
4594377--4594419	18	2.4	18	80	0	50	18	23	11	46	1.82
4594804--4595533	116	6.3	116	94	0	1264	40	3	8	46	1.54
4598474--4598888	126	3.3	125	89	2	625	27	21	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4604254--4604290	18	2.1	17	90	5	56	64	0	0	35	0.94
4604440--4604496	30	1.9	30	96	0	105	50	1	22	24	1.58
4604444--4604493	15	3.3	15	71	20	50	48	2	24	26	1.62
4604555--4604605	10	5.1	10	79	9	50	56	0	1	41	1.10
4604653--4604686	2	17.0	2	100	0	68	50	0	0	50	1.00
4604775--4604826	19	2.8	18	72	18	52	40	1	0	57	1.10
4607183--4607253	11	6.9	11	78	13	64	54	2	0	42	1.14
4607316--4607347	2	16.0	2	100	0	64	50	0	0	50	1.00
4607347--4607376	2	15.0	2	100	0	60	0	0	50	50	1.00
4608053--4608101	22	2.2	23	82	10	57	71	0	26	2	0.97
4612397--4612626	79	2.9	79	88	1	331	32	15	22	30	1.95
4613255--4613282	2	14.0	2	100	0	56	50	0	0	50	1.00
4613631--4613801	66	2.6	66	86	3	220	54	12	1	31	1.46
4613683--4613783	20	4.8	20	67	23	55	53	10	0	34	1.43
4624861--4624907	21	2.2	22	88	7	71	74	2	0	23	0.93
4624860--4624906	20	2.3	20	82	13	60	74	2	0	23	0.93
4624858--4624917	22	2.7	22	76	23	63	73	1	1	23	1.01
4624910--4624967	28	2.1	28	96	0	107	56	8	0	34	1.30
4625554--4625621	30	2.3	30	79	2	75	42	14	11	30	1.82
4625980--4626020	11	3.7	11	80	0	55	19	14	9	56	1.66
4626065--4626122	30	1.9	30	92	0	98	31	6	5	56	1.47
4627801--4627960	83	2.0	77	90	7	248	35	22	11	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4630283--4630307	1	25.0	1	100	0	50	100	0	0	0	0.00
4635070--4635095	2	13.0	2	100	0	52	50	0	0	50	1.00
4635805--4635840	16	2.1	18	90	10	58	55	0	0	44	0.99
4637188--4637221	17	2.1	17	88	5	52	38	5	5	50	1.51
4639461--4639554	14	6.7	14	68	13	50	36	24	6	32	1.81
4644696--4644728	16	1.9	18	88	11	52	51	12	12	24	1.73
4645256--4645431	45	4.0	45	81	6	182	24	27	22	26	2.00
4647824--4647894	21	3.2	21	64	24	56	23	25	14	36	1.92
4647673--4647992	91	3.5	91	86	2	381	20	24	15	38	1.92
4647668--4647992	137	2.4	138	84	2	393	21	24	15	38	1.92
4647673--4647992	46	7.0	46	90	2	392	20	24	15	38	1.92
4650157--4650193	20	1.9	20	88	5	58	51	8	0	40	1.32
4656309--4656339	15	2.1	14	94	5	53	54	6	3	35	1.42
4656326--4656394	21	3.4	20	71	16	70	55	7	1	36	1.37
4656723--4656755	12	2.8	12	100	0	66	51	6	0	42	1.26
4657034--4657063	12	2.4	13	94	5	53	0	30	3	66	1.07
4657047--4657089	18	2.4	18	81	14	54	0	25	13	60	1.34
4657081--4657113	13	2.4	14	85	15	50	0	12	15	72	1.12
4657428--4657458	15	2.1	14	94	5	53	54	6	3	35	1.42
4657445--4657513	21	3.4	20	71	16	70	55	7	1	36	1.37
4665780--4665851	21	3.2	21	66	27	58	37	12	25	25	1.91
4665774--4666094	46	7.0	46	88	0	399	39	14	24	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4667994--4668041	24	2.0	25	83	4	62	14	20	22	41	1.89
4672415--4672574	75	2.1	76	93	3	270	22	25	25	27	2.00
4672415--4672597	38	4.8	38	90	4	264	21	22	25	29	1.99
4672590--4672714	43	2.9	44	88	4	184	14	25	31	28	1.95
4674981--4675011	15	2.1	15	100	0	62	12	12	6	67	1.40
4690936--4690984	21	2.4	20	78	15	55	51	8	0	40	1.32
4691143--4691205	13	4.8	13	73	7	56	36	14	6	42	1.71
4705287--4705335	16	3.2	16	83	11	50	34	0	0	65	0.93
4708493--4708541	23	2.1	23	85	7	64	55	2	0	42	1.11
4716023--4716058	14	2.6	14	91	8	56	63	2	5	27	1.30
4719148--4719172	7	3.6	7	100	0	50	52	0	0	48	1.00
4736831--4736912	28	2.9	28	81	0	92	25	25	14	34	1.94
4740375--4740435	31	2.0	31	96	0	113	32	26	6	34	1.82
4752038--4752106	33	2.2	29	75	20	68	37	1	4	56	1.28
4752291--4752509	114	1.9	113	93	0	375	34	12	15	36	1.86
4756012--4756055	22	2.0	23	86	13	65	52	4	0	43	1.22
4760693--4760719	2	13.5	2	100	0	54	51	48	0	0	1.00
4780149--4780205	17	3.6	17	75	18	68	31	47	1	19	1.60
4780142--4780233	30	3.1	30	90	0	139	30	45	2	21	1.64
4780588--4780636	20	2.3	20	83	13	55	30	8	0	61	1.25
4780767--4780808	20	2.1	20	82	8	50	30	2	14	52	1.54
4782679--4782740	15	4.3	15	73	17	51	24	22	9	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4789499--4789561	32	2.1	29	88	11	92	30	11	20	38	1.87
4796177--4796212	18	2.0	18	100	0	72	72	5	16	5	1.23
4797553--4798232	176	3.9	177	87	2	917	30	17	21	30	1.97
4798226--4798565	43	7.7	42	65	16	161	27	20	25	26	1.99
4798185--4798706	133	3.9	131	90	3	749	29	21	22	26	1.99
4798964--4799044	17	5.2	17	69	22	70	29	50	2	17	1.59
4798964--4799044	30	2.7	30	92	0	135	29	50	2	17	1.59
4802129--4802284	3	52.0	3	78	11	142	30	3	1	64	1.20
4803531--4803633	18	5.4	18	70	17	82	36	25	25	12	1.91
4803551--4803615	21	3.2	21	73	20	75	40	23	26	10	1.87
4803533--4803633	39	2.6	39	96	0	184	37	24	25	11	1.90
4807617--4807700	32	2.8	29	80	10	98	40	2	2	54	1.26
4807643--4807702	28	2.2	27	80	13	70	38	1	1	58	1.18
4808688--4809035	113	3.0	114	87	6	497	36	14	13	35	1.86
4808698--4809035	117	2.9	114	89	5	495	35	15	13	35	1.87
4809181--4809512	110	3.0	108	84	12	392	29	14	15	40	1.87
4813242--4813271	14	2.1	14	93	0	51	56	0	10	33	1.32
4817495--4818108	3	202.7	3	72	13	327	28	5	3	62	1.34
4817707--4817775	37	1.9	35	85	5	93	26	2	4	66	1.24
4817777--4817819	16	2.6	17	82	10	54	30	4	0	65	1.13
4820813--4820871	29	2.0	29	100	0	118	28	13	23	33	1.93
4821653--4821723	36	2.0	36	100	0	142	42	11	12	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4828610--4828817	40	5.2	40	81	4	195	25	25	22	27	2.00
4828610--4828815	80	2.6	81	82	3	229	24	25	22	27	2.00
4835585--4835615	8	3.9	8	100	0	62	38	0	0	61	0.96
4835544--4835636	49	1.9	48	82	10	118	45	1	3	50	1.25
4835787--4835867	22	3.3	23	76	18	74	67	2	27	2	1.15
4835823--4835867	22	2.0	24	91	8	76	64	2	33	0	1.06
4836259--4836374	40	2.9	39	88	3	151	39	11	14	34	1.82
4837204--4837245	21	2.0	21	81	9	50	50	0	28	21	1.49
4841158--4841186	13	2.1	14	93	6	51	48	0	10	41	1.37
4856590--4856643	20	2.6	21	82	11	67	35	0	7	57	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345