genome.fa.s12.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  196  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55875397--55875526	40	3.2	40	77	13	142	24	26	24	23	2.00
55875413--55875564	40	3.8	40	80	5	155	22	26	24	26	2.00
55875413--55875564	80	1.9	80	83	5	200	22	26	24	26	2.00
55877387--55877507	46	2.6	46	81	7	138	28	17	28	26	1.98
55877382--55877651	142	1.9	138	81	7	321	27	18	28	26	1.98
55877390--55877655	49	5.6	48	73	7	183	27	18	27	25	1.98
55883720--55883759	11	3.6	11	80	12	55	20	22	5	52	1.65
55885775--55885841	32	2.1	32	100	0	134	37	2	17	41	1.65
55889394--55889446	27	2.0	27	88	0	79	30	26	15	28	1.96
55893639--55893708	27	2.6	27	95	2	122	30	27	14	28	1.95
55896811--55896905	17	5.8	16	67	15	50	27	20	15	36	1.93
55899779--55899873	46	2.1	45	80	9	104	40	16	17	25	1.91
55912102--55912140	19	2.0	21	90	10	64	5	41	5	48	1.47
55914238--55914366	40	3.3	39	80	6	154	24	27	22	24	2.00
55914238--55914403	40	4.2	40	76	8	142	23	27	22	27	1.99
55925423--55925492	27	2.5	28	97	2	133	28	12	27	31	1.93
55933342--55933410	27	2.5	28	95	4	124	28	13	26	31	1.93
55933342--55933422	27	3.0	27	87	7	76	29	14	23	32	1.95
55935173--55935207	15	2.4	14	86	13	52	20	28	8	42	1.81
55939026--55939165	41	3.4	41	89	2	201	35	22	22	19	1.96
55939180--55939214	18	1.9	18	88	0	52	60	22	0	17	1.37
55939239--55939299	16	4.0	16	76	8	65	47	36	0	16	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55939233--55939297	7	8.7	7	75	11	58	46	36	0	16	1.48
55939233--55939298	15	4.4	15	75	7	71	46	36	0	16	1.47
55940394--55940425	7	4.6	7	92	0	55	25	56	0	18	1.42
55940428--55940557	66	2.0	66	82	0	161	46	27	0	24	1.58
55940518--55940612	22	4.4	22	64	18	56	46	30	1	22	1.59
55940940--55940972	7	4.7	7	100	0	66	75	0	0	24	0.80
55940940--55940980	14	2.9	14	92	3	55	75	2	0	21	0.92
55940926--55940979	21	2.6	20	80	8	63	72	5	0	22	1.05
55940978--55941007	14	2.1	15	93	6	53	50	0	0	50	1.00
55945242--55945404	39	4.2	39	92	0	254	24	32	20	22	1.98
55953194--55953386	39	4.9	39	90	0	251	23	31	21	23	1.98
55953224--55953386	39	4.2	39	93	0	263	24	31	20	23	1.98
55956760--55956864	43	2.4	43	88	3	158	22	21	30	24	1.99
55971482--55971542	27	2.3	27	80	8	70	50	3	13	32	1.57
55973933--55974249	50	6.6	50	76	9	284	22	28	19	29	1.98
55973933--55974247	95	3.3	95	83	6	334	22	27	20	29	1.98
55973877--55974206	145	2.3	146	82	5	391	22	28	20	28	1.99
55975275--55975356	40	2.0	40	100	0	164	32	18	2	46	1.62
55977468--55977565	49	2.0	49	100	0	196	44	12	18	24	1.84
55977665--55977797	51	2.6	51	76	0	140	42	12	6	39	1.67
55978591--55978626	2	18.0	2	100	0	72	50	0	0	50	1.00
55978891--55978938	24	2.0	25	87	4	71	50	0	29	20	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55978900--55978946	24	2.0	24	86	0	67	51	0	31	17	1.46
55981475--55981513	21	1.9	20	94	5	69	46	20	0	33	1.51
55987709--55987778	27	2.5	28	88	2	106	28	14	25	31	1.95
55987709--55987790	27	3.0	27	80	8	103	29	13	23	34	1.93
55995643--55995712	27	2.5	28	88	2	106	28	14	25	31	1.95
55995643--55995724	27	3.0	27	80	8	103	29	13	23	34	1.93
56000232--56000270	21	1.9	20	94	5	69	46	23	0	30	1.53
56008169--56008271	29	3.6	29	90	0	152	25	15	33	26	1.95
56012579--56012729	29	5.2	29	84	4	128	24	14	19	41	1.89
56017393--56017420	2	14.0	2	100	0	56	50	0	0	50	1.00
56018042--56018095	3	18.3	3	88	11	85	29	0	0	70	0.88
56018369--56018438	28	2.5	28	86	4	88	27	28	17	27	1.97
56021312--56021444	58	2.3	58	92	1	223	29	30	17	22	1.96
56021312--56021449	29	4.8	30	68	12	101	28	31	17	22	1.96
56021580--56021756	43	4.1	43	95	0	309	32	34	21	11	1.89
56023677--56023723	3	16.3	3	91	8	80	29	0	0	70	0.88
56023997--56024066	28	2.5	28	88	4	97	28	28	15	27	1.96
56032208--56032245	19	2.0	20	89	5	60	36	10	23	28	1.88
56039989--56040049	30	2.0	30	87	0	86	29	24	4	40	1.76
56045117--56045267	40	3.8	40	77	13	134	27	23	26	22	2.00
56045154--56045283	40	3.2	40	77	4	138	24	23	27	23	2.00
56048106--56048429	50	6.7	48	76	11	274	26	19	29	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56048109--56048430	95	3.3	98	79	10	294	26	19	29	24	1.98
56053251--56053291	20	2.0	21	85	9	57	75	4	2	17	1.08
56054573--56055018	177	2.5	178	88	1	635	26	23	19	30	1.98
56055092--56055116	12	2.1	12	100	0	50	24	8	32	36	1.84
56061673--56061973	49	6.7	42	81	13	234	29	26	14	29	1.96
56061743--56061973	49	4.8	49	87	4	296	30	26	14	28	1.95
56061708--56061973	91	2.9	92	81	9	299	30	26	14	28	1.95
56061708--56061969	140	1.9	139	81	10	320	30	26	14	28	1.95
56061995--56062112	31	3.8	31	91	0	191	26	27	19	27	1.99
56062088--56062264	50	3.5	50	86	3	248	25	21	15	36	1.93
56072615--56072662	18	2.7	18	81	12	55	75	6	2	16	1.11
56075667--56075741	5	15.2	5	85	13	102	82	16	1	0	0.73
56083820--56083891	20	3.5	20	74	12	58	56	4	5	33	1.41
56086275--56086299	13	1.9	13	100	0	50	48	12	16	24	1.79
56086298--56086665	75	4.7	74	72	16	246	32	20	15	32	1.94
56086675--56086706	14	2.3	14	94	0	55	65	3	18	12	1.38
56097914--56097942	9	3.2	9	100	0	58	79	10	0	10	0.94
56099825--56099864	16	2.5	16	84	8	55	65	0	5	30	1.14
56100737--56100775	19	2.0	20	90	5	62	46	0	53	0	1.00
56102648--56102699	4	12.8	4	84	11	70	73	1	3	21	1.10
56105166--56105195	2	15.0	2	100	0	60	50	0	0	50	1.00
56106361--56106424	32	2.0	31	81	3	74	46	1	7	43	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56108055--56108117	22	2.8	24	73	24	64	39	19	25	15	1.91
56111601--56111632	16	2.0	16	93	0	55	50	28	6	15	1.68
56112865--56112931	8	8.4	8	88	0	98	49	20	23	5	1.71
56113142--56113249	29	3.8	29	78	6	96	32	12	27	26	1.93
56113147--56113259	58	2.0	57	80	5	129	30	14	29	25	1.95
56117657--56117736	29	2.8	29	80	3	90	30	16	30	23	1.96
56117646--56117758	58	2.0	57	82	5	138	30	15	29	25	1.95
56122079--56122103	12	2.1	12	100	0	50	36	40	16	8	1.77
56126976--56127093	30	3.9	30	96	0	218	10	27	37	24	1.88
56128917--56128971	12	4.8	12	82	10	62	69	1	3	25	1.15
56128922--56128956	6	5.8	6	100	0	70	68	0	0	31	0.90
56130566--56130592	12	2.2	12	100	0	54	77	0	7	14	0.97
56136133--56136234	42	2.4	43	81	6	118	28	23	19	28	1.98
56138931--56138956	6	4.3	6	100	0	52	69	0	0	30	0.89
56141803--56141978	46	3.8	46	77	4	183	21	21	29	28	1.98
56141799--56141971	93	1.9	93	91	0	283	21	21	30	27	1.98
56148098--56148185	23	4.0	23	69	12	60	43	5	1	50	1.33
56148709--56148786	14	5.1	15	72	18	63	46	0	1	52	1.08
56148795--56148846	16	3.4	15	74	10	52	48	0	0	51	1.00
56148805--56148852	16	3.0	16	75	6	53	52	0	0	47	1.00
56163125--56163169	24	2.0	23	86	8	65	28	22	0	48	1.50
56163421--56163463	15	2.9	15	79	6	52	62	4	0	32	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56166225--56166298	34	2.1	35	87	7	107	24	2	27	45	1.66
56166476--56166849	126	3.0	126	89	0	559	37	17	15	29	1.90
56170974--56171004	14	2.2	14	94	0	53	61	12	0	25	1.32
56171934--56172023	25	3.4	25	70	15	74	61	4	3	31	1.32
56171969--56172050	18	4.6	18	66	21	55	62	3	2	31	1.26
56171936--56172055	53	2.2	53	97	1	222	61	4	2	31	1.28
56171934--56172033	26	3.9	25	69	19	71	61	4	3	32	1.30
56172210--56172259	21	2.4	21	86	0	64	40	2	24	34	1.66
56177731--56177778	21	2.2	21	85	7	60	35	6	2	56	1.36
56181249--56181273	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345