genome.fa.s12.2.7.7.80.10.50.1000.252.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  252  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74324493--74324517	13	1.9	13	100	0	50	0	48	28	24	1.52
74325555--74325766	46	4.6	46	75	8	155	25	28	17	28	1.98
74334771--74334817	22	2.1	23	85	14	64	29	21	31	17	1.96
74335888--74336017	50	2.6	50	85	3	181	24	29	20	26	1.99
74335986--74336202	46	4.7	46	77	13	187	23	29	20	27	1.99
74336034--74336205	94	1.8	92	86	4	247	23	28	20	27	1.99
74342535--74342593	29	2.0	29	100	0	118	38	33	6	20	1.79
74349000--74349167	40	4.2	40	83	5	180	27	27	22	23	1.99
74349000--74349167	80	2.1	80	84	4	214	27	27	22	23	1.99
74356697--74356863	40	4.2	40	85	4	196	26	27	22	23	1.99
74356697--74356863	80	2.1	78	85	5	219	26	27	22	23	1.99
74361771--74361942	93	1.8	93	96	0	317	27	30	22	20	1.98
74361763--74361938	46	3.8	46	81	10	232	28	29	21	20	1.98
74367171--74367196	2	13.0	2	100	0	52	50	0	0	50	1.00
74367787--74367966	40	4.6	40	86	3	242	27	23	27	22	1.99
74373988--74374174	40	4.7	40	93	1	315	26	22	27	23	1.99
74383851--74384047	6	31.8	6	72	17	127	49	14	18	18	1.80
74383853--74384018	37	4.1	37	75	18	134	50	14	17	18	1.79
74383896--74383984	25	3.6	25	92	0	151	49	14	17	17	1.80
74383968--74384047	25	3.2	25	82	5	101	47	15	18	18	1.83
74383863--74384019	19	8.7	19	69	21	99	49	14	18	17	1.80
74384167--74384217	27	1.9	26	84	4	66	35	17	27	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74384462--74384707	27	9.3	26	77	10	205	25	19	18	36	1.94
74384470--74384672	81	2.6	77	85	4	246	26	20	17	35	1.95
74384605--74384678	23	3.0	23	80	14	94	24	21	20	33	1.97
74384524--74384678	50	3.0	49	80	11	168	25	19	18	36	1.94
74384479--74384704	77	2.9	76	83	6	238	25	19	19	36	1.94
74384464--74384707	104	2.3	106	80	4	278	25	19	17	37	1.93
74384691--74384808	27	4.4	27	75	4	94	30	9	23	36	1.86
74384524--74384731	104	2.0	104	79	3	222	26	17	19	36	1.94
74387368--74387490	59	2.1	59	95	3	221	53	9	20	16	1.70
74389487--74389673	47	4.0	47	90	2	295	33	12	28	25	1.93
74389562--74389637	23	3.2	25	60	17	61	30	14	32	22	1.94
74389836--74389978	37	3.9	36	87	4	189	23	16	32	26	1.96
74390843--74391011	27	6.3	27	85	0	230	32	8	18	39	1.82
74390860--74391011	54	2.8	54	93	0	259	31	7	19	40	1.80
74396586--74396644	27	2.2	27	81	6	66	38	18	11	30	1.87
74396631--74396714	27	3.1	27	81	3	80	27	13	9	50	1.72
74396631--74396689	26	2.2	27	81	3	75	27	10	10	52	1.67
74396746--74396844	27	3.7	27	82	4	128	43	22	6	28	1.77
74396713--74396844	54	2.4	54	78	10	128	40	20	9	29	1.83
74396746--74396926	54	3.3	55	81	4	170	42	19	7	30	1.78
74396781--74396932	27	5.6	27	76	7	110	40	17	8	32	1.80
74396770--74396928	56	2.9	55	81	1	176	42	18	7	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74397831--74397900	25	2.8	25	80	0	77	28	22	20	28	1.98
74398120--74398202	31	2.7	30	94	3	141	30	16	25	27	1.97
74400536--74400627	27	3.4	27	84	0	112	29	19	6	44	1.76
74400626--74400757	27	4.9	27	76	8	117	40	21	9	28	1.83
74400631--74400757	54	2.3	55	80	9	145	41	22	8	27	1.83
74400659--74400757	27	3.7	27	83	4	137	42	23	6	28	1.77
74400659--74400839	54	3.3	55	78	11	151	41	20	7	30	1.79
74400748--74400841	27	3.4	27	79	13	102	40	19	8	31	1.81
74401771--74401840	25	2.8	25	86	0	95	28	24	21	25	1.99
74401771--74401867	25	3.9	24	81	8	88	29	22	20	26	1.99
74401831--74401885	28	2.1	24	83	12	65	32	20	20	27	1.97
74401897--74401938	19	2.2	19	100	0	84	7	4	50	38	1.51
74402079--74402161	31	2.7	31	87	3	125	28	16	25	28	1.97
74407850--74408181	48	6.9	48	73	7	228	30	19	24	25	1.98
74407905--74408136	96	2.4	96	81	2	252	30	20	23	25	1.99
74407857--74408136	144	1.9	144	80	5	316	31	19	23	25	1.98
74413514--74413632	55	2.2	55	83	3	141	27	26	26	19	1.99
74421139--74421238	29	3.4	29	77	2	85	24	16	30	30	1.96
74422846--74422899	27	2.0	27	85	7	74	38	9	14	37	1.79
74423146--74423323	49	3.6	49	79	3	221	26	19	25	28	1.99
74423148--74423335	100	1.9	100	90	0	304	26	20	23	28	1.99
74425832--74425875	22	2.0	23	90	4	72	22	50	2	25	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74425942--74425985	21	2.1	21	91	0	70	34	13	25	27	1.93
74437897--74438045	40	3.7	40	84	3	174	25	27	20	26	1.99
74445871--74446048	40	4.5	40	83	4	191	25	27	20	25	1.99
74451416--74451486	35	2.0	35	100	0	142	32	33	8	25	1.86
74454854--74454878	13	1.9	13	100	0	50	24	24	48	4	1.68
74458253--74458310	30	1.9	30	85	0	80	43	6	20	29	1.78
74458893--74458954	31	2.0	31	93	0	106	37	8	16	38	1.78
74462598--74462825	40	5.7	40	92	3	370	24	23	27	25	2.00
74463083--74463125	22	2.0	21	82	17	52	32	16	13	37	1.88
74472432--74472638	40	5.2	40	90	4	296	23	23	27	25	2.00
74472873--74472916	22	2.0	21	83	16	54	31	18	13	36	1.90
74475744--74475768	13	1.9	13	100	0	50	12	32	40	16	1.84
74478908--74478991	31	2.7	31	96	1	152	27	27	17	27	1.98
74479189--74479493	26	11.8	26	81	2	330	32	22	18	26	1.97
74480400--74480635	27	8.7	27	81	4	215	30	7	20	41	1.79
74480511--74480668	54	2.9	54	88	3	221	28	9	22	39	1.85
74480511--74480668	81	2.0	81	84	5	212	28	9	22	39	1.85
74480511--74480635	27	4.6	27	94	3	216	28	6	24	41	1.79
74480667--74480864	27	7.3	27	87	2	254	39	7	23	29	1.81
74480667--74480864	54	3.7	54	89	1	281	39	7	23	29	1.81
74483581--74483737	40	3.9	40	80	6	174	26	19	26	27	1.99
74483583--74483754	80	2.2	79	82	5	195	26	19	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74491753--74491960	40	5.2	40	81	2	220	25	22	26	24	2.00
74494840--74494878	12	3.2	12	92	0	51	23	23	46	7	1.78
74503168--74503244	38	2.0	38	100	0	154	32	7	28	31	1.85
74506447--74506616	43	4.0	42	78	8	155	24	16	26	32	1.96
74508451--74508583	45	3.0	44	73	15	116	24	17	25	32	1.97
74511667--74511842	46	3.8	46	79	10	205	21	21	28	28	1.98
74511663--74511835	93	1.9	93	93	0	301	21	21	29	27	1.99
74517174--74517346	46	3.8	45	78	13	201	20	21	28	28	1.98
74520774--74520920	67	2.2	67	81	7	165	32	17	27	21	1.96
74522065--74522095	2	15.5	2	100	0	62	48	0	0	51	1.00
74524351--74524388	19	2.2	18	86	13	53	76	0	15	7	1.01
74525726--74525828	29	3.5	29	94	2	179	36	15	24	23	1.93
74525716--74525828	59	1.9	59	92	0	190	38	15	23	23	1.92
74528396--74528613	40	5.5	40	89	3	298	25	28	22	22	1.99
74529871--74529911	20	2.0	20	90	0	64	0	17	0	82	0.66
74536381--74536583	40	5.2	40	94	3	328	26	28	23	21	1.99
74536381--74536583	79	2.6	78	92	5	324	26	28	23	21	1.99
74543112--74543169	30	1.9	30	89	0	89	32	12	25	29	1.92
74543510--74543779	46	5.7	48	76	14	233	27	21	29	22	1.99
74543649--74543779	49	2.7	49	86	1	172	25	20	32	22	1.98
74543510--74543779	93	2.9	95	80	8	300	27	21	29	22	1.99
74544535--74544665	55	2.4	55	86	0	190	22	20	32	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74546037--74546070	17	2.0	17	100	0	68	29	23	11	35	1.90
74549581--74549771	40	4.8	40	82	8	221	25	28	21	24	1.99
74549555--74549772	79	2.7	78	82	7	244	26	27	21	24	1.99
74557731--74557949	79	2.7	79	82	8	257	26	27	21	24	1.99
74557745--74557949	40	5.1	41	83	8	237	25	28	21	23	1.99
74563322--74563526	49	4.2	49	93	3	326	30	7	30	31	1.86
74563588--74563665	37	2.1	37	95	0	138	28	19	30	21	1.97
74566777--74567040	138	1.9	143	81	10	330	23	28	18	28	1.98
74570280--74570313	18	1.9	18	88	5	52	29	17	11	41	1.85
74571374--74571468	29	3.3	29	89	1	147	29	31	14	24	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345