genome.fa.s12.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  164  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45652374--45652467	34	2.8	33	79	9	102	24	23	23	28	1.99
45653222--45653358	45	3.0	45	82	2	141	24	20	15	40	1.91
45656668--45656806	27	5.1	27	87	4	174	35	22	24	17	1.95
45658390--45658471	26	3.2	26	96	0	155	35	25	7	31	1.84
45660586--45660730	47	3.1	46	90	4	195	23	13	23	39	1.91
45666220--45666385	27	6.1	27	83	10	180	35	22	24	17	1.95
45666220--45666385	54	3.1	54	88	1	226	35	22	24	17	1.95
45666226--45666385	81	2.0	81	84	7	209	35	22	24	17	1.95
45667968--45668073	26	4.1	26	95	0	194	34	24	7	33	1.84
45673001--45673028	5	5.6	5	100	0	56	17	0	0	82	0.68
45681196--45681296	28	3.5	28	86	6	114	29	13	26	29	1.94
45686016--45686119	29	3.6	28	80	2	109	24	17	33	25	1.96
45693917--45694048	29	4.6	29	84	1	149	25	16	32	25	1.96
45710070--45710105	4	9.0	4	100	0	72	25	0	25	50	1.50
45722672--45722756	41	2.1	41	100	0	170	35	12	11	40	1.80
45729605--45729670	32	2.1	32	97	0	123	42	16	4	36	1.69
45732382--45732475	49	2.0	48	83	8	120	35	23	13	27	1.93
45734300--45734344	22	2.0	23	91	4	74	42	4	8	44	1.56
45734552--45734651	51	2.0	51	82	11	125	23	15	29	33	1.94
45737423--45737629	66	3.2	65	81	8	208	22	28	17	31	1.96
45738339--45738399	30	2.0	30	83	0	77	29	22	9	37	1.87
45739468--45739523	29	2.0	29	82	3	69	19	21	35	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45740698--45740797	49	2.0	49	100	0	200	39	24	4	33	1.74
45742684--45742708	13	1.9	13	100	0	50	24	8	20	48	1.76
45745793--45745841	17	2.8	18	74	22	50	24	18	22	34	1.96
45746664--45746830	40	4.2	40	79	6	169	25	21	27	25	1.99
45756831--45756874	22	2.0	22	95	0	79	38	18	20	22	1.93
45762989--45763082	29	3.2	29	98	0	179	26	27	15	29	1.96
45762952--45763082	58	2.3	58	86	2	174	25	32	16	25	1.96
45770826--45770919	29	3.2	29	98	0	179	26	27	15	29	1.96
45770789--45770919	58	2.3	58	86	2	174	25	32	16	25	1.96
45773618--45773782	43	3.9	42	79	8	181	30	25	16	26	1.97
45773618--45773776	86	1.9	85	85	4	221	30	25	17	25	1.97
45782647--45782855	40	5.2	40	80	4	206	24	21	26	26	1.99
45784730--45784896	43	3.9	44	77	12	159	32	25	17	24	1.96
45791309--45791567	40	6.5	39	85	6	281	27	27	20	24	1.99
45791337--45791557	80	2.8	80	92	0	352	28	26	19	24	1.99
45791337--45791569	120	1.9	121	90	0	369	28	27	20	24	1.99
45794429--45794458	13	2.3	13	100	0	60	60	0	0	40	0.97
45799041--45799221	40	4.6	40	88	2	258	25	29	20	23	1.99
45802110--45802275	46	3.7	45	80	10	164	23	28	20	27	1.99
45810304--45810431	40	3.2	40	80	1	150	23	21	28	26	1.99
45813663--45813698	18	1.9	19	88	5	56	63	0	25	11	1.27
45814546--45814574	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45815052--45815183	29	4.5	29	97	1	237	37	14	23	24	1.92
45815052--45815183	59	2.3	58	95	1	237	37	14	23	24	1.92
45815022--45815183	88	1.8	89	90	1	263	36	14	24	25	1.93
45816669--45816814	43	3.4	43	80	4	170	33	26	17	22	1.96
45827168--45827226	20	3.0	20	97	0	109	37	10	20	32	1.86
45827172--45827226	11	5.4	11	70	16	55	38	10	20	30	1.87
45827277--45827395	24	5.0	24	88	5	170	28	21	22	26	1.99
45827277--45827395	47	2.5	48	89	5	170	28	21	22	26	1.99
45827587--45827650	31	2.1	31	96	0	119	39	15	21	23	1.92
45834885--45834922	17	2.3	17	95	4	69	7	31	31	28	1.86
45835178--45835225	25	1.9	25	82	0	60	33	22	16	27	1.96
45835269--45835327	20	3.0	20	92	0	100	38	10	18	32	1.84
45835378--45835496	24	5.0	24	88	5	170	28	21	22	26	1.99
45835378--45835496	47	2.5	48	89	5	170	28	21	22	26	1.99
45835688--45835751	31	2.1	31	96	0	119	39	15	21	23	1.92
45836576--45836735	29	5.5	30	88	8	222	27	25	13	33	1.94
45836576--45836735	59	2.8	57	89	4	223	27	25	13	33	1.94
45844479--45844638	29	5.5	30	88	8	222	27	25	13	33	1.94
45844479--45844638	59	2.8	57	89	4	223	27	25	13	33	1.94
45846970--45847029	30	2.0	30	100	0	120	43	13	16	26	1.85
45848922--45849035	43	2.7	42	81	1	120	36	24	14	23	1.93
45848970--45849074	44	2.4	44	84	3	133	34	27	17	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45851889--45851998	20	5.5	20	80	2	78	23	21	20	34	1.97
45851824--45851994	40	4.2	41	82	4	197	22	22	21	33	1.97
45856335--45856502	40	4.2	40	86	2	214	23	21	28	26	1.99
45859306--45859671	46	8.0	46	87	1	466	19	24	15	40	1.90
45861812--45861877	11	6.1	11	72	22	50	63	1	0	34	1.04
45870638--45870685	22	2.2	22	88	0	69	14	27	27	31	1.95
45876009--45876094	41	2.1	41	97	0	163	19	24	25	30	1.98
45885351--45885423	29	2.5	29	100	0	146	28	15	28	27	1.96
45886682--45886712	13	2.4	13	100	0	62	35	38	12	12	1.82
45892600--45892672	29	2.5	29	100	0	146	28	15	28	27	1.96
45892600--45892732	58	2.3	59	80	5	137	25	16	32	25	1.96
45893931--45893961	13	2.4	13	100	0	62	35	38	12	12	1.82
45899830--45899902	29	2.5	29	100	0	146	28	15	28	27	1.96
45899830--45899962	58	2.3	59	80	5	137	25	16	32	25	1.96
45905503--45905650	24	6.0	25	70	10	101	31	31	13	23	1.93
45910773--45910832	30	2.0	30	83	6	77	28	23	6	41	1.79
45912424--45912451	14	2.0	14	100	0	56	35	14	0	50	1.43
45924478--45924731	55	4.8	53	79	8	243	33	17	25	23	1.96
45924485--45924687	108	1.9	110	87	4	304	31	17	25	25	1.97
45927498--45927631	29	4.6	29	85	1	101	26	31	16	26	1.96
45927497--45927685	58	3.3	59	88	3	224	26	29	15	28	1.96
45927557--45927685	29	4.4	29	98	0	249	27	27	14	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45929088--45929258	93	1.8	93	94	0	306	28	29	21	20	1.98
45929080--45929260	46	3.9	46	80	9	224	28	29	20	20	1.98
45931627--45931715	30	3.0	30	80	8	101	57	15	16	10	1.65
45931627--45931706	15	5.4	15	80	7	92	58	13	17	10	1.62
45931638--45931715	15	5.2	15	78	9	79	56	15	16	11	1.67
45934628--45934799	93	1.8	93	96	0	317	27	30	22	20	1.98
45934620--45934795	46	3.8	46	81	10	232	28	29	21	20	1.98
45937149--45937237	30	3.0	30	80	8	101	57	15	16	10	1.65
45937149--45937228	15	5.4	15	80	7	92	58	13	17	10	1.62
45937160--45937237	15	5.2	15	78	9	79	56	15	16	11	1.67
45940142--45940313	93	1.8	93	96	0	317	27	30	22	20	1.98
45940134--45940309	46	3.8	46	81	10	232	28	29	21	20	1.98
45942093--45942310	40	5.5	40	92	2	316	24	28	24	22	1.99
45950156--45950373	40	5.5	40	92	2	316	24	28	24	22	1.99
45952835--45953007	46	3.7	46	79	10	199	22	21	27	28	1.99
45952832--45953002	93	1.8	93	92	0	288	22	21	28	28	1.99
45965125--45965223	50	2.0	50	88	7	148	50	12	11	26	1.73
45968363--45968429	26	2.6	26	87	0	98	25	23	23	26	2.00
45968613--45968644	2	16.0	2	100	0	64	50	0	0	50	1.00
45974333--45974369	10	3.7	10	92	0	65	18	8	40	32	1.80
45974634--45974738	40	2.6	41	82	5	126	21	18	25	34	1.96
45974723--45974794	28	2.6	28	88	0	108	25	13	31	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45984118--45984148	15	2.1	15	100	0	62	35	32	6	25	1.82
45986073--45986104	15	2.2	15	94	5	57	21	43	15	18	1.87
45991820--45991901	28	3.2	28	61	25	72	24	18	28	29	1.98
45991778--45991945	48	3.5	48	91	4	254	25	17	27	29	1.98
45995235--45995407	49	3.5	49	92	2	267	24	16	28	30	1.97
45995228--45995420	49	3.9	49	90	2	262	24	17	29	29	1.97
46000648--46000731	28	3.2	28	65	25	83	23	16	29	29	1.96
46000600--46000788	50	3.8	49	85	2	243	25	19	26	28	1.98
46000600--46000787	99	1.9	101	87	2	281	25	19	27	28	1.98
46001733--46001840	43	2.5	43	81	1	110	31	16	22	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345