genome.fa.s12.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  177  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49942732--49942772	12	3.4	12	79	0	55	9	21	36	31	1.86
49948345--49948496	39	3.9	39	90	0	232	23	22	31	22	1.98
49948351--49948526	39	4.5	40	86	0	169	23	23	31	21	1.98
49952617--49952648	16	2.0	16	93	0	55	34	18	0	46	1.49
49952859--49953133	50	5.6	50	75	9	228	29	26	17	25	1.98
49956048--49956109	15	4.2	14	82	10	70	53	12	19	14	1.73
49959176--49959207	16	2.0	16	93	0	55	34	18	0	46	1.49
49959410--49959748	50	6.8	50	77	3	295	31	25	16	26	1.96
49959410--49959694	151	1.9	151	86	0	408	32	24	16	25	1.96
49960098--49960144	19	2.3	20	82	10	60	48	14	0	36	1.44
49965995--49966167	46	3.7	46	76	13	183	21	20	27	30	1.98
49965992--49966162	93	1.8	93	91	0	279	21	20	28	29	1.98
49976937--49977109	45	3.9	45	90	1	278	23	19	28	27	1.98
49984917--49985137	45	5.0	45	90	1	338	23	20	28	27	1.99
49990806--49990984	40	4.4	40	78	3	171	25	23	26	24	2.00
49990927--49991010	40	2.1	40	82	4	98	26	27	26	20	1.99
49990840--49991010	80	2.1	80	79	2	182	27	24	25	22	2.00
49994924--49995128	41	5.0	41	90	1	207	36	22	23	17	1.95
49994948--49995128	41	4.4	41	94	0	301	35	23	23	17	1.95
49995290--49995323	14	2.4	15	85	14	54	32	0	23	44	1.54
49996215--49996246	15	2.1	15	94	0	55	59	0	9	31	1.29
49996573--49997183	199	3.1	199	96	0	1125	33	17	20	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49997598--49997632	18	1.9	18	88	0	52	20	5	28	45	1.73
49999423--49999672	134	1.9	133	95	0	455	20	10	18	50	1.75
50001736--50001775	21	1.9	21	94	0	71	30	10	12	47	1.74
50003520--50003717	9	22.6	9	78	7	147	48	12	1	37	1.51
50003527--50003657	26	5.0	26	84	5	149	47	13	1	37	1.53
50003520--50003717	35	5.6	35	83	4	186	48	12	1	37	1.51
50003520--50003717	78	2.5	78	84	3	245	48	12	1	37	1.51
50003539--50003717	26	6.8	27	78	7	136	49	11	1	37	1.50
50003669--50003767	43	2.3	45	81	10	125	47	13	1	38	1.49
50009345--50009395	21	2.4	21	80	0	66	29	19	49	1	1.60
50009646--50009712	31	2.2	31	83	0	80	17	4	17	59	1.53
50009786--50010035	43	5.8	42	72	12	177	25	26	22	25	2.00
50011475--50011580	27	3.9	27	80	7	117	16	24	21	37	1.93
50011475--50011583	54	2.0	54	83	3	139	15	24	21	38	1.92
50012636--50012669	10	3.3	10	84	8	50	29	8	8	52	1.62
50019287--50019399	27	4.2	27	84	7	140	15	23	23	38	1.92
50019287--50019399	54	2.1	54	88	3	165	15	23	23	38	1.92
50022468--50022882	215	1.9	215	100	0	830	30	25	20	23	1.99
50024117--50024339	39	5.7	39	95	0	338	21	32	21	23	1.98
50030202--50030626	215	2.0	215	97	0	796	32	26	18	23	1.97
50031856--50032048	39	4.9	39	91	3	305	22	30	22	24	1.99
50034219--50034275	30	1.9	30	85	7	80	42	14	10	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50040886--50040958	27	2.6	28	89	2	112	30	13	26	30	1.94
50046044--50046127	37	2.3	36	93	4	141	22	34	17	25	1.96
50046061--50046122	21	3.2	21	60	21	53	20	33	17	27	1.96
50046230--50046546	49	6.5	49	95	0	562	29	31	9	29	1.88
50060136--50060401	39	6.7	40	84	2	252	22	23	26	28	1.99
50060167--50060348	79	2.3	79	90	3	287	21	23	26	28	1.99
50072621--50072721	28	3.5	28	86	6	114	28	13	27	29	1.95
50072650--50072721	29	2.5	28	91	6	110	29	13	27	29	1.95
50085025--50085462	44	9.9	44	74	11	315	29	25	15	29	1.95
50085248--50085554	87	3.5	86	75	13	338	28	25	15	29	1.96
50085190--50085525	176	1.9	176	93	1	575	29	26	15	28	1.96
50085190--50085563	176	2.1	175	87	5	517	29	25	15	28	1.96
50099390--50099685	50	5.9	50	75	2	243	27	18	24	29	1.98
50099441--50099622	101	1.8	101	85	2	258	26	21	24	26	1.99
50099441--50099671	101	2.3	99	81	3	248	26	20	24	28	1.99
50099398--50099717	150	2.1	152	82	2	376	26	18	25	29	1.98
50114568--50114810	120	2.0	120	97	0	459	29	24	20	25	1.99
50114549--50114794	40	6.2	40	92	2	406	29	25	21	23	1.99
50116210--50116237	13	2.2	13	100	0	56	57	14	0	28	1.38
50116826--50116887	31	2.0	31	96	0	115	37	11	22	29	1.89
50117482--50117534	20	2.7	20	78	0	61	15	24	15	45	1.84
50122198--50122306	43	2.6	42	77	2	128	31	18	24	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50126343--50126861	49	10.7	49	93	1	834	29	29	8	32	1.86
50133110--50133216	43	2.5	42	82	5	135	32	16	20	29	1.95
50135440--50135500	31	2.0	31	93	0	104	32	34	24	8	1.85
50137877--50138048	93	1.8	93	96	0	317	27	30	22	20	1.98
50137869--50138044	46	3.8	46	81	10	232	28	29	21	20	1.98
50140396--50140420	12	2.1	12	100	0	50	28	0	16	56	1.41
50140581--50140695	45	2.5	44	80	5	131	33	19	25	22	1.97
50140718--50140839	47	2.6	47	90	0	181	36	14	23	25	1.93
50140831--50141065	54	4.5	54	71	14	204	36	14	25	24	1.93
50140779--50140995	101	2.1	101	93	0	371	36	12	24	26	1.91
50141886--50142037	44	3.5	44	88	6	227	23	30	22	23	1.99
50146397--50146495	33	3.0	33	98	0	189	15	16	12	56	1.67
50147180--50147281	43	2.4	43	85	3	125	26	15	24	33	1.95
50149937--50150096	29	5.5	30	86	8	204	33	14	25	26	1.94
50149937--50150096	59	2.8	57	88	2	212	33	14	25	26	1.94
50152640--50152665	2	13.0	2	100	0	52	50	0	0	50	1.00
50153119--50153192	29	2.6	29	89	4	105	25	16	32	25	1.96
50160896--50160969	29	2.6	29	89	4	105	25	16	32	25	1.96
50166507--50166607	28	3.5	30	82	6	118	29	14	26	28	1.95
50166536--50166611	29	2.7	28	76	13	75	30	14	26	28	1.95
50170580--50170716	27	5.2	26	86	6	159	36	21	24	18	1.95
50172106--50172206	24	4.2	24	93	0	166	20	39	3	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50180881--50181180	47	6.3	48	92	3	432	31	8	31	29	1.87
50180881--50181180	96	3.2	95	90	4	439	31	8	31	29	1.87
50185241--50185288	25	1.9	25	86	0	69	33	25	16	25	1.96
50185329--50185381	9	5.4	9	75	16	52	32	9	20	37	1.85
50185323--50185389	20	3.3	20	89	0	107	32	11	20	34	1.90
50185439--50185592	22	7.0	23	88	9	214	27	23	19	29	1.98
50185438--50185592	64	2.3	67	90	6	244	28	23	19	29	1.98
50185438--50185613	22	7.8	24	85	11	153	28	23	20	27	1.99
50185808--50185868	28	2.1	28	85	11	79	37	16	21	24	1.93
50193400--50193452	9	5.4	9	75	16	52	32	9	20	37	1.85
50193394--50193460	20	3.3	20	89	0	107	32	11	20	34	1.90
50193509--50193659	47	3.2	46	89	4	230	29	21	21	27	1.99
50193509--50193659	71	2.1	71	95	0	266	29	21	21	27	1.99
50193509--50193659	24	6.4	24	93	3	252	29	21	21	27	1.99
50193865--50193928	31	2.1	31	84	0	83	39	15	20	25	1.92
50196039--50196513	236	2.0	237	97	0	907	20	32	21	25	1.97
50198864--50199024	39	4.1	39	90	0	250	24	32	19	22	1.97
50209382--50209418	19	1.9	19	94	0	65	16	10	16	56	1.66
50215086--50215117	13	2.4	14	94	5	57	43	9	18	28	1.81
50219112--50219919	406	2.0	406	98	0	1544	30	17	16	35	1.92
50220214--50220254	15	2.8	15	96	3	75	14	24	7	53	1.66
50221847--50221871	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50225772--50225822	5	10.8	5	85	10	72	41	15	1	41	1.58
50229289--50229350	32	1.9	32	96	0	115	38	22	9	29	1.86
50231059--50231093	18	1.9	18	88	0	52	42	0	0	57	0.99
50231147--50231200	19	3.0	19	84	7	60	66	0	0	33	0.92
50240763--50240863	24	4.2	24	93	0	175	31	2	43	21	1.68
50241948--50242050	27	3.8	27	91	5	147	19	25	21	33	1.97
50244001--50244079	25	3.3	25	69	16	76	32	30	3	32	1.76
50243951--50244255	49	6.3	49	90	2	424	29	30	7	32	1.85
50249227--50249275	17	2.8	18	74	22	50	24	18	22	34	1.96
50250098--50250264	40	4.2	40	79	6	169	25	21	27	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345