genome.fa.s12.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  188  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53344850--53344911	26	2.3	27	86	2	81	30	14	17	37	1.90
53344871--53344962	26	3.5	26	77	11	89	28	9	19	42	1.83
53346920--53347051	6	21.8	6	76	13	128	47	12	18	21	1.81
53346899--53347051	30	5.3	29	79	10	161	47	13	18	20	1.81
53347169--53347234	27	2.5	26	85	7	87	37	22	22	16	1.93
53347169--53347242	27	2.8	27	78	13	82	36	21	24	17	1.95
53347193--53347250	27	2.1	27	84	6	73	36	27	20	15	1.93
53347407--53347465	22	2.7	22	81	0	64	32	22	25	20	1.98
53347553--53347634	27	3.1	26	87	5	110	37	20	21	19	1.94
53347671--53347839	27	6.3	27	85	0	203	26	19	19	34	1.96
53347687--53347839	81	1.9	81	87	2	227	26	18	20	35	1.95
53347849--53348178	27	12.2	27	80	3	351	40	11	21	26	1.87
53347848--53348222	81	4.6	81	81	3	371	40	11	20	28	1.87
53348157--53348218	26	2.3	27	88	2	90	30	12	17	38	1.88
53348155--53348269	26	4.4	25	80	8	88	27	10	21	40	1.86
53350218--53350372	6	25.8	6	78	14	169	49	14	16	18	1.79
53350218--53350372	24	6.2	24	81	12	188	49	14	16	18	1.79
53350492--53350561	27	2.6	26	84	6	86	37	20	24	18	1.94
53350512--53350569	27	2.1	27	84	6	73	36	27	20	15	1.93
53350725--53350783	22	2.7	22	81	0	64	32	22	25	20	1.98
53350869--53350945	26	3.0	26	90	3	111	36	22	22	19	1.95
53350869--53350949	27	3.1	26	91	3	119	37	22	22	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53351147--53351337	26	7.3	27	84	5	221	26	19	18	36	1.94
53351149--53351337	79	2.4	80	85	4	251	26	19	17	36	1.94
53351148--53351337	53	3.6	53	83	6	244	26	19	17	36	1.94
53351342--53351673	27	12.3	27	85	4	411	40	11	22	25	1.87
53351215--53351379	79	2.1	79	78	13	169	30	16	20	33	1.94
53351664--53351713	24	2.0	24	84	3	64	36	12	16	36	1.85
53351697--53351760	25	2.6	24	82	7	74	26	6	23	43	1.77
53353685--53353840	6	25.8	6	77	13	160	49	14	17	18	1.80
53353958--53354023	27	2.5	26	85	7	87	37	22	22	16	1.93
53353958--53354031	27	2.8	27	78	13	82	36	21	24	17	1.95
53353982--53354039	27	2.1	27	84	6	73	36	27	20	15	1.93
53354189--53354247	22	2.7	22	81	0	64	32	22	25	20	1.98
53354334--53354413	26	3.1	25	89	5	106	36	22	21	20	1.95
53354614--53354796	27	6.9	27	80	9	171	26	20	16	36	1.94
53354808--53355135	27	12.3	27	79	7	314	40	9	22	27	1.85
53354813--53355123	160	1.9	159	87	3	455	39	9	22	27	1.85
53354808--53355121	79	4.0	78	81	6	337	40	9	22	27	1.84
53354824--53355188	106	3.5	104	78	7	328	38	9	22	29	1.86
53355126--53355175	26	1.9	26	87	0	73	30	12	22	36	1.90
53355160--53355224	25	2.6	25	83	9	78	26	6	24	43	1.77
53357167--53357310	6	23.8	6	77	14	136	47	13	18	20	1.81
53357146--53357310	30	5.9	29	79	12	150	47	13	18	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53357167--53357310	24	5.7	24	82	12	164	47	13	18	20	1.81
53357196--53357289	49	1.9	49	95	0	170	46	13	19	20	1.83
53357428--53357500	27	2.8	25	84	12	92	36	20	24	17	1.94
53357451--53357507	27	2.1	27	83	6	71	36	26	21	15	1.93
53357664--53357722	22	2.7	22	81	0	64	32	22	25	20	1.98
53357809--53357890	27	3.1	26	87	6	112	36	21	21	19	1.95
53358088--53358283	27	7.3	27	82	3	225	27	19	17	35	1.95
53358088--53358276	54	3.5	54	86	1	254	26	20	17	34	1.95
53358288--53358607	27	11.9	27	83	3	367	40	10	21	27	1.85
53358621--53358691	27	2.7	26	79	12	74	29	11	19	39	1.87
53358598--53358712	26	4.3	27	76	6	92	27	10	22	39	1.87
53358884--53358919	18	2.0	18	100	0	72	16	38	27	16	1.90
53359649--53359688	19	2.2	18	86	4	53	2	25	0	72	0.97
53363359--53363393	2	17.5	2	100	0	70	51	0	48	0	1.00
53367660--53367991	96	3.5	96	99	0	646	33	8	28	29	1.86
53367650--53367991	47	7.1	47	91	3	549	33	8	28	28	1.86
53367983--53368182	48	4.2	48	95	0	355	32	6	29	32	1.83
53368222--53368312	37	2.4	37	96	1	164	23	18	32	25	1.97
53371568--53371596	10	3.0	10	95	5	51	0	37	0	62	0.96
53374084--53374184	29	3.5	29	90	2	123	26	32	14	25	1.95
53376751--53376923	93	1.9	93	96	0	319	27	30	21	20	1.98
53376744--53376919	46	3.8	46	79	12	216	28	29	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53378807--53378850	20	2.2	20	92	8	72	36	11	18	34	1.86
53378903--53378975	26	2.8	26	89	0	110	26	23	23	27	2.00
53380527--53380702	46	3.8	46	75	10	160	22	19	27	30	1.98
53380524--53380695	93	1.8	93	87	0	254	22	20	27	29	1.98
53383599--53383653	15	3.7	15	83	11	78	12	14	10	61	1.56
53384628--53384828	46	4.4	46	83	9	257	22	19	27	29	1.98
53387729--53387792	15	4.4	15	84	11	89	10	15	12	60	1.58
53390168--53390343	46	3.8	46	80	12	225	21	21	28	28	1.98
53390164--53390335	93	1.8	93	96	0	317	20	21	29	27	1.98
53393257--53393320	15	4.4	15	84	11	89	10	15	12	60	1.58
53395680--53395803	45	2.7	45	82	12	146	23	20	27	29	1.99
53395680--53395850	93	1.8	92	87	3	254	22	19	28	29	1.98
53403862--53403945	20	4.2	20	93	3	143	35	11	19	33	1.88
53403873--53403945	11	7.2	11	73	17	77	35	12	19	32	1.89
53403884--53403940	9	5.9	9	73	15	51	35	8	21	35	1.84
53403998--53404070	26	2.8	26	95	0	128	27	26	21	24	2.00
53407469--53408143	337	2.0	337	99	0	1323	36	21	16	25	1.94
53418781--53419003	47	4.7	48	89	3	308	33	7	30	29	1.84
53424543--53424790	40	6.2	40	91	1	374	26	29	21	22	1.99
53427883--53428012	40	3.2	40	80	2	154	23	23	27	24	2.00
53435822--53435972	40	3.8	40	77	13	134	27	23	26	22	2.00
53435859--53435988	40	3.2	40	77	4	138	24	23	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53438925--53439022	49	2.0	49	100	0	196	28	8	22	40	1.82
53439510--53439594	42	2.0	42	100	0	170	36	4	16	42	1.69
53439876--53440031	47	3.3	47	82	4	192	33	9	28	27	1.88
53440102--53440186	40	2.2	40	86	2	118	17	21	31	29	1.96
53440835--53440871	2	18.5	2	94	0	65	51	0	0	48	1.00
53442616--53442685	27	2.5	28	86	2	97	32	25	14	27	1.94
53448079--53448152	33	2.3	33	81	6	80	40	18	21	18	1.91
53453048--53453177	58	2.2	58	89	2	190	26	14	32	26	1.95
53453048--53453149	29	3.5	29	94	0	186	29	14	29	26	1.95
53459738--53459903	58	2.9	59	84	4	196	26	15	31	25	1.96
53459742--53459843	29	3.5	29	97	0	195	28	14	29	27	1.95
53461283--53461467	40	4.7	40	84	7	227	23	22	28	25	1.99
53461283--53461465	79	2.3	81	85	7	241	24	22	27	25	2.00
53461284--53461500	79	2.7	78	79	12	237	25	21	27	25	1.99
53469301--53469485	40	4.7	40	84	7	227	23	22	28	25	1.99
53469301--53469483	79	2.3	81	85	7	241	24	22	27	25	2.00
53469302--53469518	79	2.7	78	79	12	237	25	21	27	25	1.99
53471267--53471302	16	2.2	16	90	0	54	63	2	5	27	1.30
53476038--53476064	5	5.4	5	100	0	54	81	0	0	18	0.69
53478734--53478921	46	4.0	47	93	4	324	33	9	27	29	1.88
53478771--53479060	93	3.1	92	78	15	242	34	7	27	30	1.85
53478913--53479107	93	2.1	93	94	4	340	33	6	27	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53478913--53479107	48	4.2	48	92	5	337	33	6	27	32	1.83
53479147--53479237	37	2.4	37	96	1	164	23	18	32	25	1.97
53481119--53481320	40	5.1	40	77	10	155	27	19	26	26	1.99
53483873--53484110	49	4.9	49	95	2	408	33	9	27	29	1.89
53483873--53484110	96	2.5	97	94	1	415	33	9	27	29	1.89
53484102--53484300	48	4.2	48	96	1	364	33	6	28	31	1.83
53484102--53484300	95	2.1	96	97	0	373	33	6	28	31	1.83
53484340--53484430	37	2.4	37	96	1	164	23	18	32	25	1.97
53485924--53485962	14	2.8	14	100	0	78	28	25	30	15	1.96
53485985--53486228	129	1.9	129	87	0	362	31	24	18	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345