genome.fa.s12.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  180  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50957598--50957712	29	4.0	28	75	8	115	28	28	15	26	1.96
50957935--50957977	8	5.4	8	88	0	68	9	23	27	39	1.85
50957923--50957981	24	2.5	24	91	0	91	8	20	22	49	1.75
50957931--50957982	16	3.3	15	86	2	68	7	19	25	48	1.75
50962175--50962289	29	4.0	28	75	8	115	28	28	15	26	1.96
50962348--50962381	17	1.9	18	88	5	52	20	44	23	11	1.84
50962512--50962554	8	5.4	8	88	0	68	9	23	27	39	1.85
50962500--50962558	24	2.5	24	91	0	91	8	20	22	49	1.75
50962508--50962559	16	3.3	15	86	2	68	7	19	25	48	1.75
50966749--50966863	29	4.0	28	75	8	115	28	28	15	26	1.96
50966922--50966955	17	1.9	18	88	5	52	20	44	23	11	1.84
50967086--50967128	8	5.4	8	82	0	59	9	20	27	41	1.83
50967074--50967132	24	2.5	24	88	0	82	8	18	22	50	1.73
50967074--50967132	16	3.7	16	75	8	66	8	18	22	50	1.73
50971335--50971419	29	3.0	28	86	8	109	27	29	16	27	1.97
50971304--50971412	58	1.9	58	86	1	157	28	30	15	25	1.96
50973114--50973264	40	3.8	40	77	13	134	27	23	26	22	2.00
50973150--50973280	40	3.3	40	79	2	156	25	23	27	23	2.00
50987163--50987278	41	2.7	43	75	10	139	24	17	31	27	1.97
50989192--50989306	29	4.0	29	84	6	137	26	14	29	28	1.95
50989205--50989315	57	1.9	58	87	1	161	27	15	29	27	1.96
50992777--50992876	27	3.5	28	84	5	121	34	28	13	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50993716--50993740	7	3.6	7	100	0	50	60	28	0	12	1.32
50996723--50996894	93	1.8	93	96	0	317	27	30	22	20	1.98
50996715--50996890	46	3.8	46	81	10	232	28	29	21	20	1.98
51002389--51002488	27	3.5	28	84	5	121	34	28	13	25	1.93
51003325--51003349	7	3.6	7	100	0	50	60	28	0	12	1.32
51006735--51006807	29	2.5	29	88	0	83	24	30	16	28	1.96
51007981--51008037	25	2.3	24	84	6	69	7	15	1	75	1.10
51008924--51009081	53	2.9	54	83	3	203	35	17	24	22	1.95
51009325--51009355	16	1.9	16	93	0	53	41	0	22	35	1.54
51011467--51011507	22	1.9	22	90	5	66	24	29	36	9	1.87
51012671--51012988	48	6.7	47	73	14	199	22	28	19	28	1.98
51012815--51012993	47	3.9	43	78	14	164	24	29	17	28	1.98
51012815--51012990	94	1.9	94	85	4	248	25	28	18	28	1.98
51013611--51013635	13	1.9	13	100	0	50	64	16	4	16	1.44
51014445--51014550	53	2.0	53	98	0	203	26	29	22	21	1.99
51018951--51019009	30	2.0	30	96	0	109	30	5	20	44	1.73
51030313--51030341	9	3.3	9	90	9	51	10	0	75	13	1.04
51033090--51033238	80	1.9	80	81	2	183	22	30	24	22	1.99
51033131--51033238	40	2.7	38	85	8	128	21	29	25	23	1.99
51041207--51041355	80	1.9	80	81	2	183	22	30	24	22	1.99
51041248--51041355	40	2.7	38	85	8	128	21	29	25	23	1.99
51043432--51043752	48	6.8	47	71	15	200	24	29	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51050800--51050965	40	4.2	40	81	3	176	24	27	21	25	1.99
51050816--51050927	39	2.8	38	85	4	134	25	29	22	23	1.99
51050816--51050965	79	1.9	78	83	6	196	24	28	22	26	1.99
51051787--51051832	17	2.5	19	74	22	53	34	23	17	23	1.96
51053030--51053094	29	2.2	29	100	0	130	27	27	15	29	1.96
51056634--51056841	40	5.2	39	82	3	202	25	25	23	25	2.00
51056634--51056840	80	2.6	80	82	3	238	25	26	23	25	2.00
51064179--51064243	29	2.2	29	100	0	130	27	27	15	29	1.96
51065654--51065699	10	4.5	10	81	5	56	13	23	21	41	1.88
51065651--51065699	21	2.4	20	82	3	62	12	22	22	42	1.86
51067425--51067489	29	2.2	29	97	0	121	26	27	16	29	1.97
51070286--51070458	46	3.7	46	77	10	199	22	19	27	30	1.98
51070683--51070720	19	2.0	20	85	15	53	36	0	23	39	1.55
51074577--51075014	47	9.3	47	92	0	678	26	29	10	33	1.89
51074627--51074705	25	3.3	25	67	16	76	30	29	6	34	1.82
51090386--51090607	47	4.7	46	75	10	207	27	20	30	22	1.98
51090386--51090600	94	2.3	93	86	3	297	27	20	30	22	1.98
51092459--51092513	23	2.4	24	84	6	69	21	29	12	36	1.91
51093310--51093428	27	4.4	27	90	2	168	32	9	23	34	1.87
51107034--51107312	137	2.0	137	86	2	382	36	11	21	30	1.89
51111911--51112114	40	5.1	40	79	2	194	24	21	29	24	1.99
51111913--51112114	80	2.5	80	80	4	228	24	20	29	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51114087--51114153	28	2.4	28	85	5	82	37	26	7	28	1.84
51120142--51120363	40	5.6	40	89	2	308	28	26	21	23	1.99
51128627--51128850	40	5.6	40	89	1	308	29	26	21	23	1.99
51133217--51133373	43	3.7	43	77	12	162	29	24	17	28	1.97
51136647--51136775	43	3.0	43	84	4	163	29	28	18	23	1.98
51140801--51140825	13	1.9	13	100	0	50	16	4	16	64	1.44
51141533--51141857	47	6.8	47	71	13	234	28	17	29	24	1.97
51141539--51141809	147	1.9	142	83	5	355	28	17	29	25	1.97
51141634--51141856	98	2.3	95	83	9	265	27	17	29	25	1.97
51143896--51144079	40	4.6	39	75	6	138	26	23	27	22	2.00
51143936--51144124	80	2.4	81	77	4	186	23	24	29	22	1.99
51152015--51152198	40	4.6	39	75	6	138	26	23	27	22	2.00
51152055--51152243	80	2.4	81	77	4	186	23	24	29	22	1.99
51155060--51155129	27	2.5	28	93	4	115	27	14	27	31	1.95
51155084--51155141	27	2.1	27	84	6	73	31	15	22	31	1.95
51163005--51163074	27	2.5	28	95	2	124	28	14	27	30	1.95
51163005--51163086	27	3.0	27	85	8	78	29	15	24	30	1.96
51165215--51165264	19	2.6	19	79	17	59	58	6	0	36	1.23
51165271--51165310	20	2.0	20	85	9	55	67	2	5	25	1.23
51169758--51169791	2	17.0	2	87	0	50	47	2	2	47	1.32
51174487--51174522	15	2.4	15	100	0	72	22	5	41	30	1.76
51176337--51176381	20	2.3	20	84	3	56	24	15	31	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51176372--51176510	60	2.3	59	81	8	156	28	20	25	26	1.99
51176410--51176513	28	3.6	28	72	21	88	26	20	26	25	1.99
51179480--51179504	2	12.5	2	100	0	50	52	0	0	48	1.00
51182510--51182560	23	2.2	23	100	0	102	50	7	15	25	1.71
51183681--51183709	3	9.7	3	100	0	58	68	0	0	31	0.89
51192355--51192444	18	5.7	16	72	16	64	58	1	1	38	1.12
51192747--51192785	20	2.0	20	94	0	69	46	10	10	33	1.72
51192742--51192815	30	2.4	31	81	2	87	48	9	8	33	1.65
51194866--51194939	28	2.6	28	91	4	114	28	14	25	31	1.95
51196664--51196700	20	1.9	18	89	10	56	43	0	21	35	1.53
51198493--51198597	50	2.1	50	98	1	203	30	7	21	40	1.81
51200224--51200265	21	2.0	21	85	0	57	42	7	11	38	1.69
51201784--51201859	23	3.4	22	82	7	82	47	27	10	14	1.77
51202676--51202705	12	2.5	12	94	0	51	6	20	40	33	1.78
51209336--51209585	40	6.2	40	90	1	385	25	24	28	22	1.99
51217438--51217687	40	6.2	40	90	1	385	25	24	28	22	1.99
51227662--51227792	57	2.3	56	84	5	183	28	16	29	25	1.97
51227665--51227792	28	4.5	28	77	5	116	26	17	29	26	1.97
51227752--51227819	28	2.4	28	82	4	75	25	19	29	26	1.98
51231906--51234406	835	3.0	830	86	2	3438	44	11	20	24	1.84
51234645--51234704	23	2.6	23	100	0	120	16	25	36	21	1.94
51235759--51236073	47	6.7	46	78	10	221	22	30	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51235752--51236073	141	2.3	139	79	8	355	23	29	19	27	1.98
51235752--51236077	94	3.5	93	75	10	322	23	29	19	27	1.98
51236796--51236820	12	2.1	12	100	0	50	60	16	8	16	1.58
51238706--51238803	27	3.6	27	92	0	160	29	17	9	43	1.80
51238687--51238815	54	2.4	54	78	2	143	33	19	8	38	1.82
51240132--51240208	9	7.9	9	72	16	64	35	9	20	35	1.85
51240141--51240212	11	7.1	11	70	17	66	36	12	19	31	1.89
51240130--51240212	20	4.2	20	96	0	157	36	12	19	32	1.88
51240267--51240433	24	7.0	23	87	6	228	29	21	21	27	1.99
51240267--51240433	47	3.5	47	88	4	230	29	21	21	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345