genome.fa.s12.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  133  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35982209--35982335	50	2.5	51	89	1	193	25	22	15	35	1.94
35983894--35984023	40	3.2	40	82	4	165	23	28	24	23	2.00
35983894--35984057	40	4.1	40	78	4	145	21	28	25	25	1.99
35991947--35992076	40	3.2	40	82	4	165	23	28	24	23	2.00
35991947--35992114	40	4.2	40	79	4	153	22	27	24	25	2.00
35994633--35994800	40	4.2	40	79	3	160	23	26	23	27	2.00
35994649--35994798	80	1.9	80	83	8	198	22	26	24	27	1.99
35998788--35998926	42	3.1	42	83	7	170	28	26	14	30	1.95
35998833--35998969	49	2.9	48	85	4	170	29	26	14	29	1.95
35998849--35999020	47	3.7	46	85	3	164	30	25	15	29	1.96
35999038--35999186	31	4.8	31	89	1	219	26	27	18	27	1.98
35999163--35999288	50	2.5	51	86	2	173	26	21	15	36	1.93
36004887--36005047	42	3.7	42	81	5	169	29	26	14	30	1.95
36004955--36005060	49	2.2	48	86	3	140	31	26	13	29	1.94
36004975--36005080	49	2.2	49	85	5	137	30	27	15	27	1.96
36005160--36005308	31	4.8	31	90	0	226	26	27	19	26	1.99
36005284--36005410	50	2.5	51	88	1	184	26	22	15	35	1.94
36007134--36007197	31	2.1	31	90	0	101	25	23	15	35	1.94
36007391--36007556	24	7.0	24	88	4	239	26	21	22	28	1.99
36007390--36007556	47	3.5	48	89	4	241	26	21	22	29	1.99
36007391--36007556	71	2.3	71	91	3	262	26	21	22	28	1.99
36007615--36007691	9	7.9	9	72	16	64	35	20	9	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36007611--36007693	20	4.2	20	96	0	157	32	19	12	36	1.88
36007611--36007682	11	7.1	11	70	17	66	31	19	12	36	1.89
36007730--36007777	25	1.9	25	82	0	60	25	14	25	35	1.94
36008935--36008999	27	2.4	27	89	0	94	21	29	20	29	1.98
36009057--36009282	27	8.3	27	72	10	102	32	9	19	38	1.84
36009233--36009551	27	11.9	27	86	4	378	40	8	22	28	1.82
36009558--36009622	27	2.4	27	89	0	103	32	12	18	36	1.88
36009503--36009741	81	3.0	76	76	8	208	33	9	20	37	1.84
36009601--36009751	27	5.7	26	83	8	153	31	7	20	41	1.80
36009600--36009751	54	2.9	52	85	7	200	31	7	20	40	1.79
36009629--36009768	27	5.3	26	82	4	129	32	7	19	41	1.78
36011664--36011808	42	3.3	42	81	10	166	28	26	15	29	1.96
36011715--36011854	49	2.9	48	85	4	167	30	26	14	28	1.95
36011922--36012068	31	4.7	31	86	5	190	27	28	18	25	1.98
36012045--36012170	50	2.5	51	86	1	164	26	22	15	36	1.93
36014095--36014239	42	3.3	42	81	10	166	28	26	15	29	1.96
36014146--36014285	49	2.9	48	85	4	167	30	26	14	28	1.95
36014351--36014499	31	4.8	31	89	1	210	26	28	18	26	1.98
36014475--36014601	50	2.5	51	85	1	166	26	22	15	35	1.94
36016507--36016682	42	4.0	42	78	12	169	30	26	14	28	1.95
36016577--36016713	49	2.9	48	85	4	170	29	26	14	29	1.95
36016781--36016929	31	4.8	31	91	0	226	25	28	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36016906--36017030	50	2.5	50	89	2	180	26	23	14	36	1.93
36020091--36020121	14	2.2	14	94	0	53	16	3	3	77	1.03
36027180--36027282	43	2.4	43	86	0	134	33	28	16	22	1.95
36027206--36027289	43	2.0	43	97	0	159	32	23	15	28	1.95
36037259--36037476	101	2.1	101	83	2	267	33	22	13	29	1.93
36040188--36040425	50	4.8	50	83	4	275	30	26	18	25	1.98
36047618--36047843	50	4.5	50	82	6	253	30	27	17	24	1.97
36054754--36054813	27	2.2	28	80	14	72	31	25	15	28	1.95
36054763--36054815	27	2.0	27	88	7	81	32	18	18	30	1.96
36072240--36072321	20	4.1	20	72	9	78	62	2	2	32	1.22
36073948--36074708	206	3.7	206	93	0	1227	30	21	17	31	1.96
36075585--36075625	11	3.5	11	81	18	55	0	21	0	78	0.76
36075577--36075625	25	2.0	25	88	4	73	2	28	0	69	1.00
36086350--36086413	23	2.8	22	77	11	58	62	7	4	25	1.42
36086445--36086484	19	2.1	19	85	0	53	55	0	7	37	1.29
36086492--36086633	7	20.1	7	68	15	78	59	2	2	35	1.21
36086526--36086629	20	4.9	20	71	17	77	60	2	0	35	1.18
36086493--36086611	29	4.0	29	71	21	95	62	1	2	33	1.19
36090933--36091033	28	3.5	28	86	6	114	29	26	13	29	1.94
36098856--36098956	28	3.5	28	86	6	114	29	26	13	29	1.94
36101650--36101683	17	1.9	18	88	5	52	38	5	5	50	1.51
36101728--36101769	14	3.2	13	81	18	52	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36101940--36101997	30	2.0	30	86	3	82	44	12	8	34	1.72
36103622--36103861	50	4.8	50	78	7	270	30	25	17	26	1.97
36103623--36103861	101	2.4	100	83	4	293	30	25	16	26	1.97
36103588--36103862	151	1.8	151	93	0	478	30	25	17	26	1.97
36104205--36104250	19	2.3	20	82	14	60	47	15	0	36	1.45
36104471--36104528	30	1.9	30	82	0	71	24	27	6	41	1.80
36106908--36107071	40	4.1	40	82	4	179	25	28	21	25	1.99
36106894--36107071	80	2.2	80	82	3	207	24	27	21	25	2.00
36108866--36108894	12	2.4	12	100	0	58	65	6	0	27	1.18
36110459--36110511	19	2.8	18	80	11	52	54	5	1	37	1.35
36110465--36110511	19	2.4	19	85	3	58	55	4	2	38	1.31
36115054--36115128	29	2.5	29	80	4	78	49	16	10	24	1.76
36121166--36121209	20	2.2	20	95	0	79	22	29	31	15	1.95
36129747--36129834	43	2.0	43	91	0	140	22	39	17	20	1.92
36130852--36131019	46	3.6	45	77	8	167	22	29	21	26	1.99
36130808--36131018	93	2.3	93	81	4	239	21	30	21	26	1.98
36138249--36138400	40	3.8	40	84	3	180	27	23	26	23	2.00
36138249--36138402	80	1.9	80	86	0	218	27	22	26	22	1.99
36138249--36138455	40	5.2	40	80	2	166	28	23	26	21	1.99
36138253--36138420	80	2.1	80	82	0	201	27	23	26	22	1.99
36146298--36146448	40	3.8	40	83	4	171	27	23	25	23	2.00
36146298--36146450	80	1.9	79	85	1	207	28	22	26	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36151714--36151763	6	8.5	6	88	4	66	16	6	0	78	0.95
36151714--36151763	23	2.1	24	88	3	75	16	6	0	78	0.95
36151715--36151783	17	3.9	17	79	7	66	18	5	0	75	1.00
36151732--36151770	18	2.2	18	85	0	51	17	5	0	76	0.96
36155893--36156028	29	4.7	29	86	3	157	24	30	15	29	1.95
36155868--36156027	58	2.8	58	81	0	176	23	33	15	27	1.95
36162534--36162788	94	2.8	92	79	5	259	23	29	20	27	1.99
36162488--36162793	46	6.6	46	68	13	171	21	29	21	28	1.98
36163599--36163627	13	2.2	13	100	0	58	13	10	24	51	1.72
36166542--36166584	11	3.7	11	77	22	52	11	16	2	69	1.28
36166538--36166585	24	2.0	24	100	0	96	12	16	4	66	1.39
36189062--36189374	162	1.9	162	98	0	599	33	24	8	33	1.86
36197246--36197290	20	2.2	20	84	0	54	26	8	8	55	1.60
36201418--36201587	43	4.0	43	75	6	148	29	26	18	25	1.98
36204316--36204406	37	2.4	37	94	1	155	26	30	17	25	1.97
36204446--36204596	48	3.2	48	87	0	232	30	27	6	35	1.83
36204588--36204829	51	4.9	50	95	3	420	30	28	8	32	1.86
36217386--36217422	2	18.5	2	94	0	65	45	0	2	51	1.15
36223177--36223378	39	5.1	40	80	10	220	24	22	27	25	2.00
36223177--36223357	79	2.3	80	82	9	212	23	22	27	25	2.00
36223216--36223382	79	2.1	78	80	10	189	25	20	26	26	1.99
36228304--36228522	40	5.5	40	86	4	257	23	26	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36234549--36234731	79	2.3	81	84	7	232	23	21	28	25	1.99
36234549--36234733	40	4.7	39	84	7	223	23	21	29	25	1.99
36234588--36234766	79	2.3	79	81	7	204	25	20	28	25	1.99
36241057--36241106	21	2.4	21	83	6	66	40	2	16	42	1.59
36242263--36242299	18	2.1	18	100	0	74	43	5	32	18	1.73
36243292--36243465	29	6.0	29	74	3	145	36	22	13	26	1.92
36251999--36252059	27	2.3	27	88	2	88	32	13	13	40	1.82
36252038--36252260	53	4.2	54	82	4	247	29	10	21	38	1.87
36252015--36252269	27	9.5	27	82	2	255	29	10	20	38	1.87
36252599--36252677	28	2.8	28	92	3	124	27	35	13	22	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345