Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  118  of  345  ( 41379 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31346050--31346198
38
3.8
38
72
15
126
44
17
17
20
1.87
31349938--31350008
18
3.9
18
72
3
61
45
16
8
29
1.77
31350135--31350249
47
2.4
47
89
2
169
39
23
21
15
1.92
31350710--31350737
2
14.0
2
100
0
56
50
0
0
50
1.00
31351340--31351378
16
2.4
16
91
0
60
0
30
0
69
0.89
31351446--31351474
2
15.0
2
92
7
51
48
0
0
51
1.00
31353326--31353445
55
2.2
55
86
3
170
49
15
8
27
1.73
31355322--31355434
19
6.2
19
82
14
148
37
8
17
36
1.81
31355322--31355434
36
3.1
38
85
12
148
37
8
17
36
1.81
31355360--31355397
17
2.5
15
80
19
51
39
10
15
34
1.82
31355391--31355416
5
5.2
5
100
0
52
38
0
23
38
1.55
31358608--31358663
28
2.0
28
100
0
112
39
10
17
32
1.84
31361712--31361745
16
2.2
15
94
5
59
91
0
8
0
0.43
31362687--31363062
84
4.4
84
84
5
463
32
22
20
25
1.98
31363064--31363607
175
3.1
175
94
0
937
32
20
20
27
1.97
31363151--31363648
87
5.7
86
68
18
332
32
19
20
27
1.97
31364041--31364101
19
3.3
18
73
15
54
34
11
16
37
1.85
31364051--31364113
19
3.3
19
88
0
99
34
9
19
36
1.84
31369049--31369087
17
2.2
18
86
4
53
43
10
0
46
1.37
31371873--31371902
15
2.0
15
100
0
60
26
20
6
46
1.75
31372999--31373025
4
6.8
4
100
0
54
22
0
51
25
1.48
31379158--31379213
27
2.0
28
83
10
71
46
0
3
50
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31392830--31393148
46
6.8
49
71
14
174
23
27
18
29
1.98
31401765--31401820
29
2.0
28
86
10
78
35
3
7
53
1.46
31404533--31404561
12
2.5
12
94
5
51
48
0
0
51
1.00
31404671--31404757
17
5.5
17
70
18
55
45
0
1
52
1.08
31404674--31404773
21
4.6
21
69
16
53
43
0
2
55
1.11
31404653--31404730
27
3.0
27
76
18
83
43
0
1
55
1.08
31404688--31404732
13
3.4
13
81
6
63
40
0
0
60
0.97
31404669--31404732
27
2.2
30
91
8
107
42
0
0
57
0.98
31404687--31404738
12
3.5
15
77
17
56
42
0
0
57
0.98
31405313--31405391
40
2.0
39
82
7
97
34
1
3
60
1.23
31418932--31418992
29
2.1
29
100
0
122
39
19
16
24
1.92
31421077--31421252
46
3.8
46
79
12
207
20
20
29
29
1.98
31421074--31421245
93
1.8
93
94
0
308
20
20
29
28
1.98
31424779--31424804
2
13.0
2
100
0
52
50
0
0
50
1.00
31429643--31429709
29
2.3
28
82
7
80
53
2
8
34
1.47
31441386--31441489
37
2.7
38
78
11
104
26
15
22
35
1.94
31442404--31442433
15
2.0
15
100
0
60
6
60
6
26
1.47
31443711--31443762
16
3.5
16
70
20
58
30
5
1
61
1.30
31443713--31443774
28
2.2
28
100
0
124
32
3
3
61
1.28
31443713--31443788
28
2.8
27
90
5
84
30
5
2
61
1.31
31443770--31443798
13
2.2
13
100
0
58
24
13
0
62
1.32
31443917--31443967
23
2.3
22
83
12
61
35
3
9
50
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31444020--31444068
19
2.5
20
80
16
57
38
0
6
55
1.25
31456607--31457128
87
6.4
85
74
14
416
30
15
19
34
1.93
31456750--31456779
14
2.1
14
100
0
60
20
13
6
60
1.55
31456750--31456783
14
2.6
13
90
9
52
26
14
5
52
1.64
31456764--31457049
73
3.8
71
78
14
302
31
16
18
33
1.93
31456677--31457128
158
2.8
158
91
1
672
31
15
18
34
1.93
31457785--31457814
15
2.0
15
100
0
60
6
60
6
26
1.47
31458543--31458589
23
2.1
22
84
11
60
34
4
10
51
1.56
31462941--31463122
46
4.0
46
89
1
240
21
23
14
40
1.91
31463509--31463623
23
4.9
23
70
12
90
31
21
29
17
1.96
31465707--31465755
21
2.5
18
73
20
53
48
4
0
46
1.20
31465793--31465839
24
1.9
25
86
4
69
31
10
4
53
1.55
31467297--31467414
51
2.3
51
91
0
182
28
22
15
33
1.95
31481511--31481564
26
2.1
26
100
0
108
38
7
35
18
1.79
31481625--31481659
18
1.9
18
88
0
52
42
11
8
37
1.72
31486169--31486231
30
2.1
31
87
3
92
39
7
9
42
1.67
31489809--31489877
34
2.0
34
94
0
120
34
20
7
37
1.80
31492515--31492541
6
4.5
6
100
0
54
62
0
0
37
0.95
31495757--31495809
27
2.0
27
88
7
81
37
5
11
45
1.64
31499262--31499292
16
1.9
16
100
0
62
38
12
19
29
1.89
31500992--31501040
23
2.1
24
85
11
66
69
20
0
10
1.17
31502217--31502257
21
2.0
21
85
0
55
17
17
24
41
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31504256--31504340
32
2.6
33
77
1
100
38
1
9
50
1.42
31512072--31512110
6
6.5
6
100
0
78
17
33
0
48
1.48
31514163--31514192
14
2.1
15
93
6
53
3
0
6
90
0.56
31522883--31522909
8
3.4
8
100
0
54
25
0
0
74
0.83
31523845--31523895
25
2.0
25
100
0
102
35
3
25
35
1.75
31524092--31524193
23
4.2
24
76
6
75
22
23
20
33
1.97
31524117--31524193
23
3.3
23
76
5
84
20
25
20
32
1.97
31525686--31525751
25
2.7
24
79
4
69
18
24
15
42
1.88
31533490--31533709
46
4.8
46
90
1
309
39
15
23
22
1.91
31534268--31534319
11
4.7
11
76
9
52
63
3
0
32
1.12
31535851--31535902
11
4.7
11
76
9
52
63
3
0
32
1.12
31541935--31542033
42
2.4
42
91
0
153
23
24
27
25
2.00
31544398--31544448
14
3.9
14
75
15
63
9
5
5
78
1.08
31544393--31544443
25
2.2
22
78
21
68
11
5
3
78
1.06
31544769--31544843
25
3.0
25
86
5
89
12
6
5
76
1.15
31544010--31545074
395
2.7
391
85
7
1471
29
11
14
45
1.80
31548693--31548723
15
2.1
15
100
0
62
61
19
0
19
1.35
31553522--31553893
186
2.0
186
98
0
726
36
24
8
30
1.85
31554135--31554168
10
3.5
10
84
8
52
61
2
0
35
1.11
31554031--31554326
66
4.2
68
79
14
321
60
4
3
31
1.32
31554253--31554307
27
2.1
25
80
12
58
58
1
3
36
1.26
31554316--31554355
16
2.4
17
83
4
55
67
7
0
25
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31554173--31554427
81
3.0
84
87
5
356
60
5
2
31
1.32
31554370--31554403
10
3.5
10
84
8
52
61
2
0
35
1.11
31554363--31554441
33
2.4
33
75
16
83
67
5
0
27
1.12
31554398--31554447
22
2.2
23
85
7
66
74
4
2
20
1.08
31558655--31558763
53
2.1
53
94
0
191
38
12
21
27
1.90
31559217--31559241
11
2.3
11
100
0
50
36
0
0
64
0.94
31559463--31559521
25
2.4
24
81
10
66
27
0
5
67
1.11
31571476--31571508
12
2.8
12
95
4
59
93
0
6
0
0.33
31575980--31576005
6
4.3
6
100
0
52
15
0
0
84
0.62
31577339--31577363
2
12.5
2
100
0
50
48
0
0
52
1.00
31583550--31583650
27
3.8
27
92
1
141
38
6
19
34
1.79
31585558--31585675
27
4.3
28
76
7
91
35
11
26
26
1.91
31587283--31587331
17
2.8
18
74
22
50
24
18
22
34
1.96
31588148--31588314
40
4.2
40
78
6
160
26
22
26
23
2.00
31595288--31595336
17
2.8
18
74
22
50
24
18
22
34
1.96
31596152--31596302
40
3.8
40
79
6
155
26
23
27
23
2.00
31596188--31596318
40
3.3
40
79
4
149
24
22
26
25
2.00
31599918--31600038
43
2.9
42
81
7
154
30
17
24
27
1.97
31604217--31604264
20
2.4
21
79
6
55
35
6
12
45
1.67
31604630--31604669
21
1.9
21
85
10
55
50
5
5
40
1.46
31612532--31612615
41
2.1
41
95
2
152
23
16
11
47
1.80
31614255--31614294
20
2.1
19
86
13
55
0
0
70
30
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31614440--31614485
16
2.9
16
90
0
65
47
4
15
32
1.65
31614458--31614511
16
3.4
16
84
7
65
40
1
20
37
1.63
31614676--31614814
58
2.4
58
84
4
176
54
1
0
43
1.14
31614785--31614811
12
2.2
12
100
0
54
55
0
0
44
0.99
31614988--31615042
23
2.2
25
84
12
69
29
14
3
52
1.58
31616156--31616188
16
2.1
16
94
0
57
30
24
15
30
1.95
31618145--31618202
29
2.0
29
100
0
116
48
24
10
17
1.78
31619437--31619483
3
15.7
3
100
0
94
31
0
0
68
0.90
31621163--31621412
55
4.7
54
79
9
248
22
24
17
35
1.95
31621210--31621409
108
1.8
110
86
6
291
23
25
17
34
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345