genome.fa.s12.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  167  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46776911--46776936	12	2.2	12	100	0	52	26	23	0	50	1.50
46779419--46779447	14	2.0	15	93	6	51	34	3	0	62	1.12
46779873--46779914	13	2.9	14	80	13	50	54	0	0	45	0.99
46779877--46779913	16	2.3	16	86	13	58	59	0	0	40	0.97
46780342--46780396	23	2.2	26	84	12	71	43	7	9	40	1.64
46781410--46781439	12	2.5	12	94	0	51	56	16	0	26	1.40
46782015--46782053	17	2.2	17	86	13	53	20	0	0	79	0.73
46782017--46782056	14	2.8	16	82	17	52	22	0	0	77	0.77
46782015--46782053	18	2.2	18	86	13	55	20	0	0	79	0.73
46783051--46783082	14	2.3	14	94	0	55	84	0	6	9	0.78
46784261--46784304	21	2.1	21	83	8	54	20	13	11	54	1.69
46786812--46786985	31	5.5	31	75	10	149	30	18	25	25	1.98
46786812--46786959	62	2.4	62	85	2	190	29	20	24	25	1.99
46787049--46787113	27	2.4	27	89	0	94	38	13	24	23	1.91
46787163--46787230	34	2.0	34	88	2	84	30	16	25	27	1.96
46791594--46791652	29	2.0	31	80	12	70	40	0	18	40	1.51
46801779--46801830	24	2.1	24	82	7	59	65	3	25	5	1.32
46811387--46811485	27	3.5	28	84	5	119	34	27	13	25	1.93
46812326--46812350	7	3.6	7	100	0	50	60	28	0	12	1.32
46820661--46820761	28	3.5	28	86	6	114	29	13	26	29	1.94
46822785--46822927	40	3.6	40	92	1	225	20	25	27	25	1.99
46822785--46822948	40	4.1	40	89	3	215	21	25	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46825052--46825115	23	3.0	22	78	15	62	25	7	1	65	1.28
46828491--46828781	47	6.1	47	92	3	494	34	8	28	28	1.86
46828501--46828780	143	2.0	143	95	1	508	34	8	28	28	1.87
46828773--46828972	48	4.2	48	94	0	346	32	6	28	32	1.83
46829012--46829102	37	2.4	37	94	1	155	24	18	31	25	1.97
46836918--46836980	31	2.1	31	87	3	92	25	23	14	36	1.93
46837173--46837337	23	7.0	24	86	6	230	26	21	23	28	1.99
46837194--46837336	47	3.1	47	92	1	234	26	20	23	28	1.99
46837387--46837453	20	3.3	20	82	0	80	32	20	13	32	1.92
46838687--46838764	27	2.9	27	79	11	88	21	20	21	35	1.96
46838895--46839082	79	2.4	79	86	7	251	29	9	21	39	1.84
46838782--46839068	27	10.8	27	73	8	151	31	10	19	39	1.85
46839060--46839172	27	4.3	27	88	3	149	43	9	18	28	1.82
46839188--46839280	26	3.6	26	91	7	145	36	5	27	30	1.79
46839286--46839374	27	3.3	26	84	4	115	32	10	16	40	1.82
46839260--46839371	53	2.1	53	80	6	120	30	10	19	39	1.86
46839286--46839389	27	3.9	26	83	5	109	34	9	16	39	1.81
46842331--46842498	24	7.0	24	83	5	198	27	21	20	30	1.98
46842352--46842497	71	2.1	71	93	0	247	28	21	20	30	1.98
46842352--46842497	47	3.1	48	87	3	206	28	21	20	30	1.98
46842547--46842613	20	3.3	20	85	0	89	32	22	13	31	1.92
46842650--46842697	25	1.9	25	86	0	69	25	16	25	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46843837--46843908	27	2.7	26	89	8	108	20	26	23	29	1.99
46843847--46843908	27	2.3	27	97	0	115	19	29	20	30	1.97
46843970--46844021	27	1.9	27	88	7	79	36	11	11	40	1.78
46844053--46844215	27	6.0	27	80	8	172	31	7	19	41	1.80
46844060--46844252	54	3.6	53	82	5	217	30	7	20	41	1.79
46844058--46844252	81	2.4	81	88	2	277	30	7	21	41	1.79
46844231--46844414	27	6.8	27	88	0	215	39	6	25	29	1.81
46844229--46844414	81	2.3	81	87	1	257	39	6	24	29	1.80
46844420--46844509	27	3.3	27	85	3	119	32	11	16	40	1.84
46844403--46844509	54	2.0	54	81	7	128	30	11	19	38	1.87
46844420--46844524	27	3.9	27	78	9	90	34	10	16	39	1.83
46853872--46854074	40	5.1	40	91	2	293	25	28	24	22	1.99
46863079--46863138	30	2.0	30	86	0	84	28	23	5	43	1.74
46865728--46865829	29	3.6	29	87	2	143	27	15	32	24	1.96
46873684--46873786	29	3.6	29	90	0	152	27	15	33	24	1.95
46879835--46879911	34	2.3	34	83	0	91	22	24	24	28	1.99
46879863--46879931	34	2.1	33	81	8	77	27	21	21	28	1.99
46891147--46891565	49	8.8	49	91	5	655	29	30	7	31	1.85
46891397--46891532	42	3.1	42	86	13	209	29	30	8	31	1.88
46891348--46891532	91	2.0	91	100	0	370	29	30	8	31	1.87
46891168--46891565	140	2.8	142	93	3	651	29	30	8	31	1.86
46893214--46893463	40	6.2	40	90	1	385	25	24	28	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46899792--46899824	15	2.2	15	100	0	66	87	0	12	0	0.53
46899790--46899825	19	1.9	18	94	5	63	86	0	13	0	0.58
46901039--46901288	40	6.2	40	90	1	385	25	24	28	22	1.99
46903150--46903355	40	5.2	40	84	4	249	24	21	28	25	1.99
46911277--46911493	80	2.7	78	80	4	238	25	22	26	25	2.00
46911277--46911493	40	5.4	40	80	3	208	25	22	26	25	2.00
46915046--46915365	48	6.7	48	72	7	231	27	18	27	27	1.98
46915046--46915366	96	3.4	94	82	3	399	27	18	27	27	1.98
46931676--46931843	40	4.2	40	82	3	178	25	26	22	26	2.00
46936619--46936725	29	3.7	29	81	5	108	23	30	15	29	1.96
46937885--46937941	19	3.2	17	79	13	60	5	14	1	78	0.99
46937886--46937939	18	2.9	18	80	19	67	5	14	1	77	1.03
46944517--46944623	29	3.7	29	81	5	108	23	30	15	29	1.96
46945717--46945770	20	3.0	19	80	17	62	5	16	0	77	0.94
46946659--46947122	48	9.7	47	82	3	410	25	18	30	26	1.98
46946659--46947120	239	1.9	240	87	1	676	25	18	30	26	1.98
46958432--46958615	78	2.3	82	81	10	231	25	21	26	26	2.00
46958432--46958615	40	4.7	40	86	8	227	25	21	26	26	2.00
46970937--46971443	42	12.1	42	87	1	714	31	25	19	23	1.98
46979022--46979053	16	2.0	16	93	0	55	15	25	15	43	1.86
46983353--46983446	28	3.3	28	77	5	109	28	31	13	25	1.94
46983935--46983973	20	1.9	21	84	5	53	30	23	10	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46985434--46985773	42	8.1	42	86	1	421	32	24	18	24	1.97
46995190--46995354	40	4.2	40	89	4	262	24	26	23	25	2.00
46995193--46995350	79	2.0	80	91	3	257	25	27	23	24	2.00
47004831--47004891	28	2.2	28	85	2	79	24	24	26	24	2.00
47005015--47005064	26	1.9	26	83	0	64	44	20	18	18	1.88
47005064--47005138	27	2.8	26	80	6	78	33	20	22	24	1.97
47005279--47005453	27	6.5	26	84	4	197	25	20	18	34	1.96
47005279--47005450	54	3.2	54	86	1	229	25	20	19	34	1.96
47005291--47005450	81	2.0	81	87	0	230	25	20	20	34	1.96
47006966--47007132	40	4.2	40	81	2	176	24	27	22	25	2.00
47006982--47007132	80	1.9	79	83	6	198	23	27	22	25	2.00
47007955--47008000	17	2.5	19	74	22	53	34	23	17	23	1.96
47014175--47014319	41	3.9	35	77	13	130	22	26	23	26	2.00
47019233--47019442	40	5.2	40	87	2	305	25	24	28	21	1.99
47027366--47027575	40	5.2	40	87	2	305	25	24	28	21	1.99
47029411--47029571	24	6.6	24	70	10	112	31	29	13	25	1.93
47035701--47035847	40	3.7	40	86	0	186	46	27	12	13	1.79
47046742--47046922	46	3.9	46	80	11	217	20	20	30	28	1.98
47046744--47046915	93	1.8	93	95	2	310	20	21	30	27	1.98
47051035--47051481	49	9.1	49	96	1	788	30	27	8	33	1.87
47056086--47056292	40	5.2	39	79	7	204	25	21	27	26	1.99
47056086--47056265	79	2.3	80	85	2	229	26	22	27	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47064210--47064415	40	5.2	39	79	8	204	24	21	28	25	1.99
47064213--47064360	78	1.9	79	87	4	219	24	20	29	25	1.99
47067960--47068279	48	6.7	48	72	7	231	27	18	27	27	1.98
47067960--47068280	96	3.4	94	82	3	399	27	18	27	27	1.98
47071074--47071143	29	2.4	29	80	4	79	22	17	31	28	1.96
47078838--47078940	29	3.6	28	81	5	116	21	16	33	29	1.95
47087990--47088121	29	4.6	29	83	1	149	25	32	16	25	1.96
47095774--47096086	164	1.9	164	95	0	563	20	25	21	31	1.98
47097824--47098048	49	4.5	49	86	2	288	26	16	28	28	1.97
47102967--47103002	18	2.0	18	100	0	72	38	0	22	38	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345