genome.fa.s12.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  145  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39603921--39603949	7	4.3	7	91	8	51	72	0	0	27	0.85
39603921--39603949	13	2.1	14	93	6	51	72	0	0	27	0.85
39605786--39606008	49	4.5	49	86	2	293	28	27	18	25	1.98
39605773--39606017	99	2.5	100	83	2	305	28	27	18	25	1.98
39606960--39607074	27	4.3	26	87	5	149	36	23	23	16	1.94
39606960--39607074	54	2.1	54	88	3	169	36	23	23	16	1.94
39607484--39607513	16	1.9	15	93	6	51	3	20	23	53	1.60
39608685--39608820	26	5.2	26	98	0	236	36	25	5	33	1.78
39619039--39619130	48	1.9	48	90	0	148	28	23	20	27	1.99
39622604--39622658	21	2.8	19	84	13	60	67	0	9	23	1.19
39623585--39623741	40	3.9	40	84	0	215	15	16	24	43	1.87
39627791--39627971	49	3.8	49	80	11	205	26	18	30	24	1.98
39627791--39627971	99	1.9	94	85	7	247	26	18	30	24	1.98
39629979--39630030	26	2.0	26	85	7	70	44	3	0	51	1.19
39630054--39630096	21	2.0	22	86	4	61	53	0	0	46	1.00
39630705--39630741	14	2.6	14	91	0	56	32	18	10	37	1.86
39635267--39635309	8	5.4	8	80	0	50	46	18	23	11	1.82
39635266--39635309	16	2.7	16	85	3	61	47	18	22	11	1.80
39635427--39635462	17	2.1	18	89	5	56	25	22	33	19	1.97
39635525--39635599	29	2.6	29	89	2	107	26	17	29	26	1.97
39635533--39635605	29	2.5	29	90	0	110	24	19	30	26	1.98
39639904--39640059	43	3.6	43	76	7	156	32	26	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39647077--39648246	84	13.8	84	85	3	1314	32	12	10	44	1.77
39647239--39648229	419	2.4	420	86	2	1362	33	12	10	43	1.76
39651682--39651719	20	1.9	20	94	0	67	34	5	5	55	1.45
39664503--39665025	280	1.9	280	90	0	841	26	19	20	33	1.96
39668749--39668812	32	2.0	32	93	3	112	21	10	40	26	1.86
39668756--39668824	32	2.3	29	72	27	72	23	11	40	24	1.88
39676134--39676203	27	2.6	27	95	2	122	30	27	14	28	1.95
39685502--39685562	27	2.3	27	97	2	115	16	9	47	26	1.77
39689099--39689123	12	2.1	12	100	0	50	32	0	8	60	1.26
39690674--39690722	24	2.0	24	100	0	98	26	28	12	32	1.92
39697328--39697534	40	5.2	39	84	5	231	25	27	22	24	2.00
39697328--39697534	79	2.6	79	84	4	265	25	27	22	24	2.00
39705395--39705602	40	5.2	39	85	4	240	25	27	22	24	2.00
39713114--39713160	22	2.1	22	100	0	94	25	10	25	38	1.88
39714058--39714096	13	3.1	12	85	7	51	41	0	2	56	1.13
39714124--39714163	16	2.5	16	84	8	55	45	0	0	55	0.99
39714141--39714185	20	2.2	20	84	4	54	44	2	0	53	1.13
39714171--39714212	19	2.3	19	87	4	59	54	0	0	45	0.99
39717144--39717200	22	2.5	22	81	10	62	42	0	8	49	1.34
39717580--39717613	10	3.4	10	87	0	50	29	5	0	64	1.17
39720889--39721111	69	3.3	68	90	4	342	43	22	7	26	1.79
39721946--39721970	11	2.3	11	100	0	50	16	0	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39727589--39727874	47	6.0	47	94	2	473	32	8	29	29	1.87
39727866--39727969	48	2.2	48	98	0	199	34	6	26	31	1.83
39728009--39728136	37	3.4	37	95	1	220	24	19	32	24	1.98
39729984--39730283	40	7.6	40	84	5	279	26	20	26	26	1.99
39731027--39731132	41	2.6	41	76	10	101	28	23	23	24	2.00
39733467--39733499	12	2.8	12	90	4	50	81	0	6	12	0.85
39733592--39733621	14	2.1	15	93	6	53	0	53	0	46	1.00
39733579--39733631	22	2.4	22	81	12	72	0	52	0	47	1.00
39734098--39734145	20	2.4	19	80	19	53	33	0	2	64	1.05
39734181--39734211	13	2.3	14	94	5	55	41	0	6	51	1.27
39736495--39736584	31	3.2	31	61	36	76	32	8	28	30	1.88
39736489--39736729	47	5.0	47	91	4	365	33	8	28	29	1.86
39736721--39736824	48	2.2	48	96	0	190	34	7	26	30	1.85
39736864--39736991	37	3.4	37	95	1	220	23	18	32	25	1.97
39740423--39740500	38	2.1	38	95	0	138	30	3	25	39	1.74
39741229--39741286	6	9.5	6	76	10	55	46	15	17	20	1.84
39741199--39741296	31	3.2	31	88	0	106	46	14	19	19	1.83
39741235--39741306	31	2.6	26	75	21	74	50	13	16	19	1.79
39741449--39741522	27	2.8	26	85	4	85	35	20	21	22	1.96
39741476--39741547	27	2.7	27	82	6	76	37	20	22	19	1.94
39741706--39741770	22	3.0	22	80	8	78	33	21	23	21	1.97
39742197--39742365	27	6.3	27	88	0	239	24	20	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39742267--39742419	27	5.7	26	87	7	130	25	15	22	36	1.93
39742215--39742392	81	2.2	81	87	4	252	24	18	21	35	1.96
39742215--39742392	54	3.3	53	82	6	198	24	18	21	35	1.96
39742347--39742905	54	10.4	54	77	5	380	31	8	21	38	1.83
39742215--39742419	81	2.5	81	84	4	227	25	17	21	36	1.94
39742347--39742905	27	20.7	27	76	8	266	31	8	21	38	1.83
39742564--39742884	81	4.0	80	77	8	294	32	8	20	39	1.82
39742684--39742905	107	2.1	107	84	4	259	31	9	19	40	1.83
39753292--39753420	49	2.6	50	83	9	158	25	20	30	24	1.98
39757450--39757569	47	2.6	44	82	12	143	21	31	20	26	1.98
39764035--39764098	30	2.1	30	94	0	110	21	32	23	21	1.98
39765002--39765210	46	4.5	46	76	10	164	26	28	16	27	1.97
39765039--39765210	94	1.8	92	84	9	233	25	27	18	28	1.98
39768915--39769064	67	2.2	67	81	8	171	32	17	28	21	1.96
39768939--39769122	67	2.8	64	77	8	194	29	17	29	22	1.97
39770206--39770230	2	12.5	2	100	0	50	48	0	0	52	1.00
39772094--39772264	93	1.8	93	94	0	306	28	28	21	21	1.98
39772089--39772261	46	3.8	45	78	13	199	29	27	20	21	1.98
39774797--39774860	31	2.1	31	90	0	101	23	25	15	35	1.94
39775052--39775218	24	7.0	24	93	3	257	26	22	22	28	1.99
39775051--39775218	71	2.3	71	90	4	257	26	22	22	29	1.99
39775268--39775328	20	3.0	20	95	0	113	34	19	9	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39775268--39775323	11	5.5	11	71	16	57	32	19	10	37	1.86
39775371--39775418	25	1.9	25	86	0	69	25	16	25	33	1.96
39776656--39777238	27	21.6	27	89	3	568	40	9	22	26	1.85
39776656--39777239	54	10.8	54	86	4	768	40	9	22	26	1.85
39776657--39777239	81	7.2	81	85	5	757	40	9	22	26	1.85
39780260--39780362	29	3.6	27	81	5	98	29	33	16	21	1.95
39788011--39788113	29	3.6	27	81	5	98	29	33	16	21	1.95
39792952--39793082	30	4.5	30	86	8	171	32	13	25	28	1.94
39792952--39793082	58	2.2	58	86	4	174	32	13	25	28	1.94
39800738--39800868	30	4.5	30	86	8	171	32	13	25	28	1.94
39800738--39800868	58	2.2	58	86	4	174	32	13	25	28	1.94
39804363--39804535	46	3.7	46	76	4	186	28	28	20	22	1.98
39804368--39804538	93	1.8	93	93	0	297	28	29	20	22	1.98
39812923--39812974	26	2.0	25	85	14	70	30	26	5	36	1.80
39816453--39816594	48	3.0	49	87	4	193	29	23	18	28	1.98
39826346--39826535	40	4.8	39	76	7	161	25	23	27	23	2.00
39826346--39826528	79	2.3	81	82	7	214	25	23	27	24	2.00
39835122--39835371	49	5.2	49	93	1	398	30	8	32	29	1.87
39835122--39835371	97	2.6	97	92	2	405	30	8	32	29	1.87
39835338--39835398	25	2.3	26	94	5	106	32	0	31	36	1.58
39835289--39835438	74	2.0	74	97	0	282	29	6	32	32	1.83
39835240--39835487	123	2.0	123	94	0	433	29	7	32	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39835363--39835507	49	3.0	49	94	0	254	28	8	32	29	1.88
39835192--39835507	172	1.8	171	93	0	551	29	8	32	30	1.86
39835609--39835693	37	2.3	37	93	0	143	25	20	32	21	1.97
39838633--39838771	40	3.5	39	84	2	163	25	24	28	22	2.00
39838632--39838797	79	2.1	79	79	4	183	25	23	27	24	2.00
39842541--39842627	44	2.0	44	86	4	122	47	10	2	40	1.50
39843194--39843223	15	2.1	14	93	6	51	36	16	0	46	1.47
39850938--39850962	11	2.3	11	100	0	50	68	0	0	32	0.90
39855611--39855641	16	1.9	16	93	0	53	51	25	6	16	1.68
39856839--39856890	24	2.2	23	86	3	68	53	19	19	7	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345