genome.fa.s12.2.7.7.80.10.50.1000.303.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  303  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91297551--91297636	40	2.2	39	89	2	127	30	27	17	24	1.97
91301138--91301266	67	1.9	66	86	9	181	20	26	26	27	1.99
91301283--91301436	72	2.1	73	90	1	238	26	24	27	22	1.99
91301912--91302074	42	3.9	42	81	1	130	42	16	23	16	1.88
91301951--91302056	21	5.0	22	72	11	80	40	17	23	17	1.91
91319294--91319333	20	2.0	21	85	5	55	20	22	17	40	1.92
91320411--91320642	115	2.0	116	92	1	385	39	23	5	31	1.77
91321164--91321207	17	2.6	17	85	0	61	29	0	0	70	0.88
91321161--91321206	8	5.6	9	80	17	55	26	0	0	73	0.83
91329901--91329938	20	1.9	20	88	0	58	39	10	5	44	1.61
91332280--91332404	44	2.8	44	87	0	178	47	11	16	24	1.80
91337781--91337821	2	20.5	2	94	0	73	48	2	0	48	1.14
91338819--91338896	39	2.0	39	100	0	156	33	23	25	17	1.96
91345214--91345363	80	1.9	80	95	2	275	29	16	3	50	1.61
91346506--91346552	19	2.3	21	79	13	55	44	4	12	38	1.62
91346862--91346917	5	10.6	5	81	11	67	39	0	3	57	1.16
91346865--91346918	12	4.3	12	80	17	65	40	0	3	55	1.17
91348015--91348071	15	3.9	15	88	2	89	35	0	12	52	1.39
91348444--91348530	21	4.0	23	80	10	92	14	21	25	37	1.92
91352770--91352816	19	2.3	21	79	13	55	44	4	12	38	1.62
91352992--91353032	21	1.9	22	85	5	57	41	0	4	53	1.22
91353125--91353180	5	10.6	5	81	11	67	39	0	3	57	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91353128--91353181	12	4.3	12	80	17	65	40	0	3	55	1.17
91354278--91354334	15	3.9	15	88	2	89	35	0	12	52	1.39
91354705--91354791	21	4.0	23	80	10	92	14	21	25	37	1.92
91358614--91358809	65	3.0	65	91	0	311	21	18	9	50	1.76
91359331--91359730	44	9.0	44	75	8	236	31	17	21	29	1.96
91359554--91359721	85	2.0	85	82	4	205	32	17	22	27	1.97
91364269--91364309	18	2.2	20	86	8	59	60	2	0	36	1.10
91370021--91370178	24	6.6	24	72	5	113	32	30	13	22	1.93
91372647--91372689	18	2.5	17	80	3	50	37	9	0	53	1.33
91380522--91380572	14	3.5	15	76	10	52	29	0	17	52	1.45
91380521--91380583	28	2.2	30	83	11	78	28	1	19	50	1.56
91380659--91380783	42	3.0	42	89	3	139	22	18	24	34	1.96
91380674--91380783	42	2.6	42	95	0	193	21	19	25	33	1.97
91385155--91385262	26	4.2	26	95	0	198	36	25	6	31	1.82
91389270--91389326	25	2.3	25	84	0	69	21	29	19	29	1.97
91389295--91389363	25	2.8	25	80	8	70	21	26	21	30	1.99
91391318--91391351	11	3.2	10	88	12	50	29	0	0	70	0.87
91394025--91394063	13	3.0	13	82	14	53	82	0	2	15	0.79
91394118--91394176	3	19.7	3	100	0	118	66	0	0	33	0.92
91394113--91394187	6	11.9	7	92	5	69	62	0	5	32	1.17
91394335--91394404	35	2.0	35	91	5	115	58	5	2	32	1.36
91395875--91396140	88	3.0	88	87	1	374	26	20	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91395905--91396175	88	3.1	87	79	10	291	27	20	24	27	1.99
91396192--91396396	86	2.4	87	88	1	295	24	21	20	33	1.97
91396385--91396490	45	2.4	45	91	0	176	27	22	21	28	1.99
91396582--91396783	44	4.6	43	74	8	181	18	26	19	35	1.95
91396592--91396840	133	1.9	135	90	3	405	20	24	21	33	1.97
91396727--91397455	88	8.3	88	89	0	1041	21	24	21	33	1.97
91398273--91398320	4	11.8	4	95	4	87	22	0	0	77	0.78
91409034--91409101	3	22.7	3	100	0	136	66	0	0	33	0.92
91409260--91409327	33	2.0	35	85	5	95	55	7	2	33	1.42
91410489--91410577	40	2.2	40	85	0	115	30	12	20	37	1.89
91410556--91410770	78	2.7	79	88	2	308	31	15	22	31	1.95
91412799--91412837	17	2.4	17	82	4	53	51	10	2	35	1.50
91415728--91415780	15	3.6	15	73	12	56	45	5	0	49	1.26
91422690--91422802	56	2.0	56	100	0	226	32	30	15	21	1.95
91436308--91436354	11	4.4	11	75	5	51	14	8	14	61	1.55
91437226--91437287	29	2.2	29	97	2	117	37	12	0	50	1.41
91438917--91438996	40	2.0	40	100	0	160	27	32	10	30	1.89
91444055--91444218	58	2.9	56	81	11	165	42	1	3	53	1.24
91444083--91444218	58	2.4	57	85	6	177	43	0	2	52	1.21
91444311--91444404	44	2.1	44	86	7	127	35	24	5	35	1.78
91444386--91444424	16	2.4	16	91	0	60	28	28	7	35	1.85
91455109--91455219	47	2.4	47	83	6	145	35	22	16	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91461803--91461838	12	3.0	12	87	0	54	25	22	5	47	1.73
91468704--91469124	70	6.2	69	75	12	401	24	14	22	38	1.91
91468537--91469127	262	2.3	255	94	3	1029	25	14	22	36	1.93
91468965--91469130	72	2.3	71	88	4	244	22	15	21	41	1.89
91469355--91469499	74	1.9	76	88	5	224	30	18	22	28	1.97
91469195--91469672	165	2.9	166	90	3	714	29	18	20	31	1.96
91469529--91470035	72	6.5	73	75	12	406	29	16	19	34	1.94
91469528--91470245	88	9.0	76	73	14	427	28	16	19	35	1.94
91469887--91469922	14	2.7	13	86	4	54	30	13	5	50	1.65
91470017--91470078	30	2.1	30	90	6	99	19	9	29	41	1.83
91469668--91470246	254	2.3	248	85	6	762	27	16	18	36	1.93
91470874--91470956	16	5.7	15	72	18	59	72	20	3	3	1.15
91471548--91471588	2	20.5	2	94	0	73	48	2	0	48	1.14
91488844--91488880	16	2.3	16	86	13	58	40	0	0	59	0.97
91488892--91488947	22	2.6	22	83	5	62	51	0	0	48	1.00
91489781--91489826	21	2.4	19	80	20	51	17	15	36	30	1.91
91493307--91493340	3	11.3	3	93	0	59	67	29	0	2	1.05
91493656--91493702	22	2.1	22	81	14	53	34	14	6	44	1.71
91494867--91494952	31	2.9	30	80	16	106	58	1	5	34	1.30
91496115--91496276	69	2.3	69	88	1	234	29	16	19	34	1.94
91496188--91496823	342	1.9	333	82	6	796	26	19	22	31	1.98
91500136--91500164	13	2.1	14	93	6	51	0	0	31	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91500500--91500531	4	8.0	4	92	0	55	25	3	25	46	1.67
91500381--91500735	151	2.3	150	86	3	471	32	5	28	33	1.80
91500651--91500685	4	8.8	4	100	0	70	25	0	25	48	1.51
91503041--91503103	28	2.3	26	82	15	81	49	9	11	30	1.70
91515551--91515627	24	3.4	24	77	19	78	35	0	2	62	1.09
91515550--91515627	11	7.0	11	77	9	61	35	0	2	61	1.10
91515564--91515605	13	3.3	13	80	16	52	38	0	4	57	1.20
91517452--91517536	43	2.0	43	88	2	127	34	18	9	37	1.83
91518256--91518297	22	1.9	22	85	9	59	76	2	2	19	1.01
91527583--91527613	4	8.0	4	92	7	55	0	0	22	77	0.77
91531807--91531886	41	1.9	42	87	7	119	20	31	27	21	1.98
91533145--91533204	30	2.0	30	83	6	77	36	8	26	28	1.85
91533626--91533802	47	3.8	46	81	12	218	22	20	27	29	1.98
91535448--91535473	6	4.3	6	100	0	52	53	15	15	15	1.73
91536428--91536466	20	2.1	18	85	9	51	35	2	0	61	1.10
91538211--91538247	5	7.4	5	100	0	74	62	0	0	37	0.96
91539249--91539300	26	1.9	28	88	7	81	21	9	13	55	1.66
91541639--91541695	29	2.0	29	82	0	69	49	1	8	40	1.44
91551335--91551389	27	2.0	27	92	0	92	30	12	18	38	1.88
91551424--91551725	156	1.9	157	83	8	389	26	15	15	41	1.88
91552108--91552167	30	2.0	30	93	0	102	28	21	6	43	1.78
91553978--91554082	18	5.8	18	89	0	147	30	23	14	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91553978--91554084	54	2.0	54	90	0	169	30	23	14	30	1.95
91561270--91561453	43	4.3	43	92	0	287	28	29	15	26	1.96
91564510--91564555	23	2.0	23	100	0	92	30	8	39	21	1.84
91565589--91565637	24	2.0	24	100	0	98	42	4	0	53	1.20
91565596--91565641	12	3.9	12	80	2	58	43	4	0	52	1.21
91566253--91566346	41	2.3	40	81	1	116	21	25	21	31	1.98
91568916--91569250	84	4.0	83	96	1	625	33	14	8	42	1.77
91570960--91571059	50	2.0	51	82	11	125	29	14	8	49	1.71
91574496--91574549	26	2.1	26	82	0	63	48	1	1	48	1.23
91588057--91588112	24	2.3	24	81	0	58	35	1	0	62	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345