genome.fa.s12.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  179  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50604911--50605072	30	5.4	30	88	3	245	20	16	13	48	1.80
50612437--50612563	46	2.8	44	82	9	157	26	18	29	24	1.98
50617279--50617351	29	2.5	29	93	0	101	26	31	16	26	1.96
50625249--50625321	29	2.5	29	93	0	101	26	31	16	26	1.96
50633962--50634119	43	3.7	42	78	5	149	31	25	17	24	1.97
50637368--50637539	93	1.8	93	94	0	308	27	30	21	20	1.98
50637360--50637535	46	3.8	46	81	10	214	28	29	21	21	1.98
50639913--50639995	28	2.9	28	82	10	96	56	15	16	10	1.66
50639909--50639986	15	5.4	15	77	13	83	58	12	17	10	1.61
50639920--50639995	15	5.2	15	75	12	77	56	14	17	11	1.67
50649450--50649483	17	1.9	18	88	5	52	55	5	2	35	1.39
50651220--50651485	50	5.3	50	81	5	295	38	18	12	30	1.88
50658499--50658584	43	2.0	43	100	0	172	44	16	6	32	1.74
50660018--50660209	40	4.8	40	79	9	203	25	28	20	25	1.99
50660018--50660213	79	2.5	80	80	7	218	25	28	20	26	1.99
50664942--50665082	40	3.5	40	83	1	158	22	28	22	26	1.99
50671018--50671082	28	2.3	28	94	0	112	33	27	7	30	1.85
50671150--50671240	27	3.3	27	86	7	112	19	23	24	32	1.97
50672312--50672344	11	3.1	11	86	4	50	30	9	9	51	1.64
50677693--50677725	12	2.6	13	85	9	50	9	45	0	45	1.35
50678787--50678851	28	2.3	28	91	0	103	32	27	7	32	1.85
50678957--50679047	28	3.2	28	90	4	139	20	24	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50678957--50679072	56	2.1	55	82	9	137	19	24	21	34	1.96
50679508--50679546	19	2.1	19	85	0	51	15	5	7	71	1.26
50683211--50683360	67	2.2	67	81	8	171	32	17	28	21	1.96
50683235--50683418	67	2.8	64	77	8	194	29	17	29	22	1.97
50684495--50684521	2	13.5	2	100	0	54	48	0	0	51	1.00
50686768--50686870	29	3.6	28	80	5	109	27	26	16	30	1.97
50694691--50694792	29	3.6	28	77	7	100	27	26	15	30	1.96
50698028--50698158	43	3.0	43	75	7	149	29	13	23	32	1.93
50703031--50703055	2	12.5	2	100	0	50	48	0	0	52	1.00
50706416--50706452	19	1.9	19	88	0	56	51	21	0	27	1.48
50708320--50708389	27	2.5	28	88	2	106	31	25	14	28	1.95
50717717--50717741	12	2.1	12	100	0	50	76	0	8	16	1.02
50727475--50727646	46	3.7	45	72	13	143	27	21	27	23	1.99
50735073--50735379	47	6.6	46	71	11	198	26	20	29	23	1.99
50739314--50739506	40	4.8	40	90	3	275	24	29	23	23	1.99
50746127--50746278	39	3.9	39	95	0	259	23	21	31	23	1.98
50754936--50754974	19	2.1	19	85	0	51	71	7	5	15	1.26
50755437--50755530	28	3.3	28	88	4	127	34	24	22	19	1.97
50755633--50755697	28	2.3	28	91	0	103	32	7	27	32	1.85
50756752--50756784	12	2.6	13	85	9	50	45	0	45	9	1.35
50762761--50762799	19	2.1	19	85	0	51	71	7	5	15	1.26
50763260--50763351	28	3.2	28	90	4	141	32	22	23	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50763418--50763481	28	2.3	28	91	2	103	31	7	28	32	1.85
50770517--50770735	40	5.5	40	92	2	336	23	22	27	26	2.00
50772569--50772644	40	1.9	40	88	0	116	30	28	17	23	1.97
50775445--50775492	25	1.9	25	82	0	60	37	20	20	20	1.95
50776117--50776166	21	2.5	20	83	6	64	36	22	2	40	1.65
50780490--50780576	43	2.0	43	100	0	174	36	6	18	37	1.78
50797666--50797729	24	2.6	25	77	7	67	39	20	23	17	1.92
50798224--50798263	21	1.9	21	84	0	53	37	17	0	45	1.49
50808667--50808704	13	2.9	13	77	14	51	42	0	5	52	1.24
50810157--50810196	15	2.7	15	84	3	55	67	0	2	30	1.04
50810209--50810235	14	1.9	14	100	0	54	66	0	3	29	1.09
50810286--50810359	40	1.9	40	83	8	100	59	2	2	35	1.26
50810527--50810585	30	2.0	30	89	0	91	59	6	13	20	1.57
50811663--50811692	2	15.5	2	93	6	53	50	0	0	50	1.00
50815129--50815159	14	2.2	14	100	0	62	54	6	0	38	1.26
50823084--50823243	24	6.5	24	71	7	117	31	29	13	25	1.94
50824976--50825002	11	2.5	11	100	0	54	55	0	0	44	0.99
50828840--50828872	11	3.0	11	86	13	50	57	0	0	42	0.98
50831550--50831651	48	2.1	48	82	8	120	27	23	18	30	1.98
50831512--50831664	42	3.5	41	72	15	128	25	24	20	29	1.99
50831546--50831760	90	2.3	90	82	9	229	27	23	19	29	1.98
50831733--50831873	49	2.9	49	88	0	192	24	29	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50833343--50833445	50	2.1	50	94	0	179	33	28	10	27	1.90
50833735--50833762	14	2.0	14	100	0	56	42	0	0	57	0.99
50837756--50837856	40	2.5	39	78	10	105	36	18	20	23	1.95
50837947--50838052	38	2.7	38	77	2	113	31	19	21	27	1.98
50839812--50839916	40	2.6	40	90	3	158	27	20	25	25	1.99
50841342--50841415	21	3.5	21	72	5	60	18	1	29	50	1.56
50841347--50841455	14	7.8	14	72	10	71	15	0	33	50	1.51
50841360--50841420	21	2.9	21	78	4	70	18	1	29	50	1.56
50841417--50841482	21	3.2	20	76	4	60	12	0	39	48	1.40
50841432--50841491	21	2.9	21	76	0	66	11	0	41	46	1.40
50841783--50841827	14	3.2	14	78	12	56	20	0	33	46	1.51
50841846--50841936	7	12.7	7	71	17	53	19	0	37	42	1.52
50841846--50841898	22	2.4	23	82	17	69	18	0	33	47	1.49
50842334--50842972	114	5.6	113	83	6	673	25	13	22	38	1.91
50843060--50843181	59	2.1	59	84	3	156	21	38	3	36	1.70
50846020--50846061	10	4.6	9	80	14	50	40	9	0	50	1.35
50846357--50846428	25	3.0	25	67	19	64	40	15	5	38	1.70
50846526--50846556	9	3.4	9	90	0	53	51	19	0	29	1.47
50846559--50846602	13	3.4	13	93	0	79	52	9	0	38	1.33
50846511--50846639	64	2.0	65	88	7	192	50	13	0	34	1.48
50846590--50846682	43	2.2	43	92	1	152	50	17	1	31	1.53
50846532--50846738	56	3.8	53	77	15	192	49	16	0	33	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50846666--50846692	13	2.1	13	100	0	54	51	11	0	37	1.37
50846572--50846763	99	2.0	94	88	5	285	47	17	1	33	1.55
50846740--50846812	9	8.1	9	72	11	51	42	20	4	32	1.71
50846679--50846762	43	2.0	43	85	4	116	44	20	1	34	1.59
50846709--50846795	36	2.5	36	86	3	124	47	17	2	33	1.60
50851777--50851805	14	2.1	14	93	6	51	34	0	10	55	1.34
50852215--50852269	21	2.6	21	79	0	74	29	16	47	7	1.73
50852215--50852280	21	3.2	20	76	8	69	28	15	46	9	1.76
50852522--50852587	31	2.1	31	88	0	96	16	12	21	50	1.77
50854539--50854641	27	3.8	27	86	10	138	36	21	24	17	1.94
50854536--50854641	54	2.0	54	88	3	160	37	20	24	16	1.93
50863523--50863611	34	2.6	33	76	11	90	30	20	22	26	1.98
50875282--50875351	27	2.6	27	97	2	131	31	27	12	28	1.93
50889419--50889534	46	2.5	46	88	0	169	31	28	18	20	1.97
50891929--50892006	15	5.4	15	75	13	74	58	14	16	10	1.62
50891940--50892015	15	5.2	15	70	17	61	56	15	15	11	1.67
50894210--50894376	40	4.2	40	82	2	185	25	27	21	25	1.99
50894210--50894376	80	2.1	79	83	7	205	25	27	21	25	1.99
50901401--50901567	40	4.2	40	82	2	185	25	27	21	25	1.99
50901401--50901567	80	2.1	79	83	7	205	25	27	21	25	1.99
50908721--50908881	29	5.6	29	81	2	173	25	32	17	24	1.97
50915946--50916104	29	5.5	29	81	3	169	26	32	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50931603--50931917	27	11.7	27	84	1	382	27	19	17	35	1.94
50933875--50933955	27	2.9	27	78	12	83	35	20	22	20	1.96
50933932--50934105	67	2.6	67	96	0	312	32	22	27	17	1.96
50934702--50934987	27	10.6	26	82	8	254	26	18	18	36	1.94
50934720--50934987	54	4.9	54	91	1	394	26	18	19	36	1.94
50934731--50934982	81	3.1	81	88	1	371	26	18	18	36	1.93
50934731--50934989	27	9.6	27	85	3	335	26	18	18	36	1.94
50936142--50936254	54	2.1	53	86	3	156	23	26	23	25	2.00
50937105--50937207	40	2.6	40	84	0	134	33	13	27	25	1.93
50951980--50952077	41	2.4	41	89	3	144	20	22	27	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345