genome.fa.s12.2.7.7.80.10.50.1000.235.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  235  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68998833--68998999	40	4.2	40	79	6	169	25	21	27	25	1.99
69003590--69003618	2	14.5	2	100	0	58	51	0	0	48	1.00
69009437--69009480	20	2.2	20	87	0	61	36	31	4	27	1.77
69009566--69009686	43	2.9	42	83	8	149	28	25	16	29	1.97
69012993--69013125	70	1.9	70	87	0	194	27	15	24	33	1.94
69023255--69023286	12	2.7	12	95	0	55	21	0	18	59	1.38
69023744--69023913	41	4.2	40	74	18	161	22	22	26	28	1.99
69027014--69027068	26	2.1	26	100	0	110	36	25	3	34	1.74
69028968--69029174	53	3.8	54	77	4	211	21	23	16	38	1.93
69033172--69033240	28	2.5	28	95	2	122	43	27	10	18	1.82
69037355--69037392	20	1.9	20	88	0	58	34	2	10	52	1.50
69039007--69039075	28	2.5	28	95	2	122	43	27	10	18	1.82
69043190--69043227	20	1.9	20	88	0	58	34	2	10	52	1.50
69044841--69044909	27	2.6	27	93	4	113	44	26	10	18	1.81
69047104--69047139	18	1.9	19	88	5	56	63	0	25	11	1.27
69048479--69048580	29	3.5	29	98	0	195	38	14	23	23	1.92
69052668--69052990	163	2.0	163	93	1	558	31	28	13	26	1.94
69057530--69057704	31	5.7	31	86	2	230	28	24	18	29	1.98
69057925--69057952	13	2.2	13	100	0	56	21	32	35	10	1.88
69057941--69058005	25	2.6	25	92	0	103	23	23	26	27	2.00
69058779--69058850	27	2.7	27	75	12	62	25	22	20	31	1.98
69058889--69059098	27	7.7	27	73	5	120	33	10	17	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69058897--69059090	54	3.6	54	76	8	194	34	10	15	39	1.82
69059005--69059164	27	6.0	27	71	8	85	31	12	19	36	1.89
69059118--69059204	26	3.3	26	87	4	113	41	12	19	26	1.87
69059130--69059220	27	3.4	27	83	4	114	41	10	21	25	1.86
69066549--69066641	40	2.3	40	88	3	134	29	27	19	23	1.98
69074521--69074706	40	4.7	40	88	5	236	25	26	22	25	2.00
69076095--69076266	45	3.8	44	78	12	179	20	20	29	29	1.98
69079175--69079254	15	5.4	15	77	7	83	10	18	13	57	1.64
69079166--69079253	30	3.0	30	80	11	92	10	18	15	55	1.68
69081617--69081792	46	3.8	45	79	10	194	20	20	30	28	1.98
69081614--69081783	93	1.8	93	94	0	304	21	21	30	27	1.98
69085489--69085587	28	3.4	29	83	6	112	31	27	12	29	1.92
69086059--69086084	2	13.0	2	100	0	52	50	0	0	50	1.00
69087787--69087817	16	1.9	16	93	0	53	35	22	0	41	1.54
69087784--69087823	20	2.0	20	85	0	53	37	22	0	40	1.54
69088061--69088257	55	3.6	53	77	6	164	21	23	17	37	1.94
69092107--69092166	30	2.0	30	90	0	93	40	6	25	28	1.80
69098219--69098403	40	4.6	40	94	1	309	22	23	28	25	1.99
69098215--69098431	80	2.7	80	87	3	296	24	22	26	26	2.00
69098662--69098705	22	2.0	21	83	16	54	31	18	13	36	1.90
69102939--69103055	43	2.7	43	78	3	121	29	25	15	29	1.96
69106850--69107034	40	4.7	40	85	6	200	25	21	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69119629--69119691	27	2.3	27	100	0	126	36	9	26	26	1.87
69124435--69124570	29	4.7	29	85	3	148	24	30	15	30	1.95
69124410--69124561	58	2.6	58	78	0	151	24	32	15	27	1.95
69133545--69133604	23	2.6	23	89	0	93	13	28	33	25	1.93
69140846--69140944	28	3.5	28	81	9	112	29	25	16	29	1.96
69152002--69152186	79	2.3	81	82	9	220	23	27	24	24	2.00
69151995--69152186	40	4.8	40	78	7	151	22	28	23	25	2.00
69157924--69157963	20	1.9	22	90	10	66	57	5	7	30	1.48
69160279--69160342	31	2.1	31	90	0	101	25	23	15	35	1.94
69160535--69160700	24	7.0	24	88	4	230	27	22	22	27	1.99
69160535--69160701	71	2.3	71	90	3	255	27	22	22	27	1.99
69160535--69160700	47	3.5	48	86	4	230	27	22	22	27	1.99
69160746--69160796	20	2.5	20	93	0	84	31	21	11	35	1.90
69160833--69160880	25	1.9	25	91	0	78	25	14	25	35	1.94
69169396--69169608	38	5.5	40	90	6	323	23	23	28	25	1.99
69169392--69169608	78	2.8	80	89	5	331	23	22	28	25	2.00
69177578--69177727	40	3.8	40	94	0	264	21	20	28	30	1.98
69182551--69182771	46	4.8	45	79	11	191	29	21	28	20	1.98
69182551--69182773	93	2.4	93	80	10	233	29	21	28	20	1.98
69184407--69184496	40	2.2	40	80	7	112	24	28	22	24	1.99
69186763--69186813	15	3.4	15	70	20	52	5	21	41	31	1.77
69186755--69186822	30	2.3	30	94	0	118	16	25	35	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69193503--69193725	46	4.8	46	77	10	179	28	19	30	21	1.98
69195080--69195131	27	2.0	26	84	3	68	34	21	26	17	1.95
69212257--69212460	46	4.5	45	81	11	188	23	30	20	25	1.98
69212300--69212516	92	2.4	91	82	4	249	22	31	19	26	1.98
69212300--69212508	46	4.6	44	79	11	181	22	31	19	27	1.97
69218351--69218554	46	4.5	45	81	11	188	23	30	20	25	1.98
69218394--69218610	92	2.4	91	82	4	249	22	31	19	26	1.98
69218394--69218602	46	4.6	44	79	11	181	22	31	19	27	1.97
69224894--69224942	17	2.8	18	74	22	50	24	18	22	34	1.96
69225761--69225927	40	4.2	40	79	6	169	25	21	27	25	1.99
69232885--69232933	17	2.8	18	74	22	50	24	18	22	34	1.96
69233752--69233917	40	4.2	39	77	9	158	25	21	27	24	1.99
69239142--69239259	38	3.1	38	91	2	182	23	18	22	34	1.96
69251759--69251797	19	2.1	19	100	0	78	38	15	20	25	1.92
69254449--69254622	49	3.5	49	87	1	258	30	26	16	26	1.97
69256472--69256521	26	1.9	26	95	0	91	18	18	24	40	1.91
69262295--69262352	28	2.1	28	100	0	116	27	6	20	44	1.77
69264819--69265026	43	4.9	43	86	4	242	33	30	15	20	1.94
69264832--69265026	85	2.3	86	83	4	225	33	30	15	19	1.93
69267855--69268081	48	4.7	48	83	0	283	25	21	24	28	1.99
69272306--69272530	27	8.4	27	89	1	310	42	21	14	21	1.89
69281893--69281999	42	2.5	42	96	0	196	28	14	33	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69282007--69282076	27	2.5	28	86	2	97	27	14	25	32	1.94
69292374--69292403	14	2.2	13	94	5	51	53	13	0	33	1.40
69297705--69297739	16	2.2	16	100	0	70	42	14	5	37	1.69
69304421--69304590	20	8.9	20	78	11	167	15	22	27	34	1.94
69309089--69309287	99	2.0	100	92	1	328	25	15	24	34	1.95
69314093--69314475	50	7.7	49	78	5	376	31	26	17	24	1.97
69314093--69314475	101	3.8	99	79	5	405	31	26	17	24	1.97
69314103--69314475	151	2.5	150	89	2	563	31	26	17	24	1.97
69316955--69317047	30	3.1	30	92	6	161	23	21	16	38	1.92
69317243--69317385	24	6.0	24	91	4	209	26	22	22	28	1.99
69317243--69317384	47	3.0	48	90	5	207	26	22	22	28	1.99
69317242--69317385	71	2.0	72	89	4	220	26	22	22	29	1.99
69317434--69317494	20	3.0	20	92	0	104	32	21	11	34	1.89
69317537--69317584	25	1.9	25	86	0	69	25	16	25	33	1.96
69324981--69325062	35	2.4	34	81	8	94	23	34	18	24	1.96
69325107--69325566	48	9.7	48	90	2	696	31	26	7	34	1.84
69325107--69325566	95	4.8	95	91	1	699	31	26	7	34	1.84
69329394--69329663	40	6.8	40	87	1	364	25	25	20	27	1.99
69329394--69329663	119	2.3	120	86	1	364	25	25	20	27	1.99
69329394--69329663	79	3.4	80	87	1	364	25	25	20	27	1.99
69331533--69331618	37	2.3	37	95	0	154	23	34	19	22	1.96
69331663--69332171	48	10.7	48	92	1	799	31	26	7	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69331925--69331955	13	2.4	13	94	0	53	41	25	0	32	1.56
69339290--69339547	40	6.5	40	90	5	375	25	29	21	24	1.99
69344572--69344668	41	2.4	41	91	0	149	20	16	28	34	1.95
69352369--69352510	41	3.5	41	92	0	221	21	19	28	30	1.98
69357965--69358231	46	5.8	46	88	1	392	28	27	20	22	1.99
69363179--69363211	16	2.1	16	94	0	57	51	27	6	15	1.66
69364684--69364794	29	3.9	29	82	6	129	29	16	29	24	1.96
69373702--69373841	39	3.6	39	91	0	208	26	20	28	25	1.99
69373702--69373870	39	4.3	39	90	2	205	25	20	28	25	1.99
69373731--69373880	79	1.9	78	82	8	187	24	21	28	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345