genome.fa.s12.2.7.7.80.10.50.1000.213.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  213  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61549708--61549825	43	2.7	43	89	1	182	24	25	18	31	1.98
61551908--61552059	43	3.4	44	83	11	177	28	23	16	30	1.96
61562274--61562779	48	10.6	48	88	0	663	27	29	16	26	1.97
61565455--61565626	24	7.1	24	69	12	136	30	11	29	28	1.92
61565406--61565553	73	2.0	73	100	0	296	30	10	29	29	1.91
61565479--61565900	49	8.2	49	76	15	329	31	8	31	28	1.87
61565403--61565722	122	2.6	122	98	1	617	30	10	30	29	1.90
61565528--61565675	73	2.0	73	100	0	296	30	10	29	29	1.91
61565601--61565900	96	3.1	96	88	3	444	32	8	31	28	1.86
61565601--61565900	145	2.1	144	89	2	451	32	8	31	28	1.86
61571632--61571743	27	4.2	26	85	7	143	37	23	23	16	1.93
61571632--61571743	54	2.1	54	88	3	163	37	23	23	16	1.93
61573173--61573231	24	2.5	24	97	0	109	27	37	1	33	1.67
61573511--61573607	30	3.2	31	73	5	101	27	28	15	27	1.96
61575857--61575955	29	3.4	28	74	13	85	27	33	17	22	1.96
61582032--61582194	39	4.2	39	92	0	254	22	20	32	24	1.98
61585301--61585432	29	4.6	29	82	1	140	25	15	32	25	1.96
61589347--61589513	40	4.2	40	82	2	185	25	27	21	25	1.99
61589347--61589513	80	2.1	79	83	7	205	25	27	21	25	1.99
61590338--61590383	17	2.5	19	74	22	53	34	23	17	23	1.96
61595712--61595829	41	3.1	41	60	28	98	32	17	28	21	1.96
61595680--61595843	71	2.3	71	100	0	328	35	17	28	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61602769--61602924	67	2.3	68	94	5	278	35	16	28	18	1.93
61604477--61604862	50	7.7	50	75	7	343	25	17	25	31	1.97
61604476--61604861	101	3.8	101	74	10	261	25	17	26	31	1.97
61604470--61604861	151	2.6	151	93	0	651	25	17	26	31	1.97
61605064--61605095	16	2.0	16	93	0	55	46	0	18	34	1.49
61608971--61609154	27	6.8	27	88	0	242	29	20	8	42	1.80
61608971--61609153	54	3.4	54	88	0	285	29	19	8	42	1.80
61608971--61609153	81	2.3	81	91	0	294	29	19	8	42	1.80
61609133--61609247	27	4.2	27	80	4	106	38	22	7	31	1.83
61608971--61609181	81	2.6	80	84	3	287	30	19	8	41	1.82
61608971--61609210	81	3.0	80	81	4	275	31	20	8	39	1.82
61609149--61609325	81	2.2	79	80	7	196	38	20	10	29	1.87
61609149--61609298	27	5.6	26	79	7	142	40	21	8	30	1.83
61609174--61609298	54	2.3	54	84	8	157	41	21	8	28	1.81
61609291--61609424	27	5.0	27	89	0	196	34	20	21	23	1.97
61609627--61609697	25	2.8	25	87	4	99	30	23	19	25	1.98
61609627--61609724	25	4.0	24	82	7	67	31	22	20	25	1.98
61612085--61612322	27	8.8	27	87	0	314	31	21	8	39	1.83
61612074--61612365	27	10.8	26	82	6	181	33	20	8	37	1.83
61612074--61612365	81	3.6	81	80	1	289	33	20	8	37	1.83
61612067--61612365	54	5.5	53	81	3	220	33	21	8	37	1.82
61612283--61612467	54	3.4	54	84	3	185	38	21	9	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61612274--61612482	81	2.6	80	81	6	224	38	21	9	31	1.85
61612325--61612469	27	5.4	27	83	3	184	40	23	8	27	1.84
61612342--61612548	81	2.6	80	79	7	190	40	21	9	28	1.85
61612510--61612671	27	6.0	27	83	1	200	37	20	18	23	1.94
61612512--61612672	54	3.0	54	87	0	225	37	20	18	23	1.94
61612873--61612942	25	2.8	25	84	0	95	27	24	22	25	2.00
61612873--61612955	25	3.4	25	77	11	66	30	21	22	25	1.99
61615341--61615551	27	7.8	27	91	2	316	30	23	6	39	1.80
61615328--61615593	27	9.9	27	87	1	246	33	22	7	36	1.82
61615328--61615615	54	5.3	54	85	2	292	35	22	6	35	1.81
61615328--61615593	81	3.3	81	82	2	300	33	22	7	36	1.82
61615530--61615669	27	5.2	27	78	9	117	40	21	8	30	1.83
61615296--61615607	81	3.8	79	77	6	203	34	22	7	35	1.82
61615544--61615668	54	2.3	54	82	4	137	42	20	8	28	1.82
61615661--61615821	27	6.0	27	85	0	196	34	18	21	26	1.96
61615650--61615822	81	2.1	81	86	3	242	35	17	20	26	1.95
61616024--61616118	25	3.8	25	86	6	113	28	23	23	25	1.99
61621510--61621605	45	2.1	45	86	0	129	25	12	26	36	1.91
61621523--61621632	45	2.4	45	81	0	121	24	14	29	31	1.95
61621723--61621763	17	2.4	17	100	0	82	29	7	14	48	1.71
61632592--61632630	10	3.8	10	93	6	69	30	17	17	33	1.94
61632592--61632631	21	1.9	21	100	0	80	30	17	17	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61634395--61634437	22	2.0	22	90	0	68	41	13	18	25	1.88
61640463--61640501	10	3.8	10	93	6	69	30	17	17	33	1.94
61640463--61640502	21	1.9	21	100	0	80	30	17	17	35	1.93
61647893--61648050	47	3.3	47	88	1	217	31	7	32	28	1.85
61665483--61665605	45	2.8	44	85	4	160	31	24	15	28	1.95
61666077--61666145	29	2.3	29	73	14	70	27	24	1	46	1.61
61672534--61672696	70	2.3	71	97	1	310	19	28	18	34	1.95
61672534--61672730	70	2.8	70	90	4	249	20	28	17	32	1.96
61680065--61680227	70	2.3	71	97	1	310	19	28	18	34	1.95
61680065--61680261	70	2.8	70	90	4	249	20	28	17	32	1.96
61685140--61685197	29	1.9	31	83	13	77	46	1	18	32	1.60
61688564--61688769	40	5.2	40	94	1	335	22	22	28	27	1.99
61690953--61691137	40	4.7	40	84	7	227	23	22	28	25	1.99
61690953--61691135	79	2.3	81	85	7	241	24	22	27	25	2.00
61690954--61691170	79	2.7	78	79	12	237	25	21	27	25	1.99
61698997--61699181	40	4.7	40	84	7	227	23	22	28	25	1.99
61698997--61699179	79	2.3	81	85	7	241	24	22	27	25	2.00
61698998--61699214	79	2.7	78	79	12	237	25	21	27	25	1.99
61705088--61705129	21	2.0	21	85	0	57	69	2	14	14	1.30
61706700--61706804	40	2.6	40	98	0	201	23	22	28	24	1.99
61706703--61706827	40	3.2	39	88	5	180	25	21	27	25	1.99
61711039--61711244	40	5.2	39	89	5	297	22	22	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61713538--61713621	26	3.4	25	88	8	118	27	22	22	27	1.99
61715147--61715339	80	2.4	80	85	2	253	25	27	22	24	2.00
61715147--61715340	40	4.8	40	82	4	205	25	27	22	24	2.00
61717980--61718204	124	1.8	124	85	1	317	31	11	23	34	1.89
61718199--61718328	40	3.2	40	82	4	165	23	24	28	23	2.00
61718161--61718328	80	2.1	80	81	6	198	25	23	27	23	2.00
61726134--61726324	40	4.8	39	75	11	156	26	27	21	24	1.99
61726178--61726325	38	3.7	39	82	7	174	27	26	21	25	1.99
61726141--61726323	78	2.3	80	84	2	235	27	26	21	24	1.99
61728097--61728182	38	2.6	31	73	23	84	32	17	24	25	1.97
61735778--61735860	25	3.4	24	88	8	114	27	22	22	26	1.99
61736069--61736131	31	2.0	31	87	0	90	34	14	25	25	1.94
61739102--61739126	12	2.1	12	100	0	50	48	16	0	36	1.46
61741207--61741249	23	1.9	23	85	4	61	44	25	4	25	1.73
61741238--61741299	23	2.7	23	94	0	106	46	22	6	24	1.75
61742060--61742142	43	2.0	43	88	7	125	36	25	14	24	1.93
61744541--61744579	19	2.1	19	85	0	51	71	5	7	15	1.26
61745020--61745134	55	2.1	56	82	8	137	35	21	23	19	1.96
61745045--61745134	28	3.2	27	84	7	110	33	23	23	20	1.97
61745045--61745134	27	3.2	27	82	7	101	33	23	23	20	1.97
61751209--61751450	40	6.1	40	80	3	263	25	22	27	24	2.00
61751209--61751436	120	1.9	120	85	1	314	25	23	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61751209--61751429	80	2.8	80	92	0	352	26	23	27	22	2.00
61765335--61765452	41	3.1	41	60	28	98	32	17	28	21	1.96
61765303--61765466	71	2.3	71	100	0	328	35	17	28	18	1.94
61768656--61768871	46	4.6	46	79	8	179	28	16	30	25	1.96
61771967--61772408	27	16.6	27	83	6	517	28	21	9	41	1.84
61773648--61773695	25	1.9	25	86	0	69	33	25	16	25	1.96
61773743--61773798	11	5.5	11	71	16	57	35	12	19	32	1.89
61773732--61773798	20	3.3	20	93	0	116	34	11	20	32	1.90
61773849--61773968	23	5.1	23	87	4	177	29	22	20	28	1.98
61773848--61773990	24	6.0	23	83	7	180	29	22	20	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345